Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0105 and Rru_A0106 are separated by 94 nucleotides Rru_A0106 and Rru_A0107 overlap by 4 nucleotides Rru_A0107 and Rru_A0108 are separated by 14 nucleotides
Rru_A0105: Rru_A0105 - Penicillin-binding protein 1C (NCBI), at 123,031 to 125,151
_A0105
Rru_A0106: Rru_A0106 - TPR repeat, Tetratricopeptide TPR_4 (NCBI), at 125,246 to 126,043
_A0106
Rru_A0107: Rru_A0107 - MSHA biogenesis protein MshM (NCBI), at 126,040 to 126,951
_A0107
Rru_A0108: Rru_A0108 - Peptidase A24A, prepilin type IV (NCBI), at 126,966 to 127,592
_A0108
Position (kb) 125
126
127 Strain fitness (log2 ratio) -1
0
1 at 124.600 kb on + strand, within Rru_A0105 at 124.601 kb on - strand, within Rru_A0105 at 125.161 kb on - strand at 125.177 kb on - strand at 125.625 kb on - strand, within Rru_A0106 at 125.788 kb on - strand, within Rru_A0106 at 125.788 kb on - strand, within Rru_A0106 at 125.788 kb on - strand, within Rru_A0106 at 126.219 kb on + strand, within Rru_A0107 at 126.220 kb on - strand, within Rru_A0107 at 126.226 kb on + strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.640 kb on + strand, within Rru_A0107 at 126.640 kb on + strand, within Rru_A0107 at 126.641 kb on - strand, within Rru_A0107 at 126.641 kb on - strand, within Rru_A0107 at 126.641 kb on - strand, within Rru_A0107 at 126.778 kb on + strand, within Rru_A0107
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 124,600 + Rru_A0105 0.74 -0.6 124,601 - Rru_A0105 0.74 +0.7 125,161 - -0.4 125,177 - -0.3 125,625 - Rru_A0106 0.47 -0.5 125,788 - Rru_A0106 0.68 -0.7 125,788 - Rru_A0106 0.68 +0.2 125,788 - Rru_A0106 0.68 -1.1 126,219 + Rru_A0107 0.20 -0.1 126,220 - Rru_A0107 0.20 -0.2 126,226 + Rru_A0107 0.20 -0.1 126,227 - Rru_A0107 0.21 +0.5 126,227 - Rru_A0107 0.21 +0.5 126,227 - Rru_A0107 0.21 +0.9 126,227 - Rru_A0107 0.21 -0.1 126,227 - Rru_A0107 0.21 -0.1 126,640 + Rru_A0107 0.66 +0.3 126,640 + Rru_A0107 0.66 +0.9 126,641 - Rru_A0107 0.66 +0.3 126,641 - Rru_A0107 0.66 +0.0 126,641 - Rru_A0107 0.66 +0.1 126,778 + Rru_A0107 0.81 +0.9
Or see this region's nucleotide sequence