Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.665.1 and Xcc-8004.666.1 overlap by 1 nucleotides Xcc-8004.666.1 and Xcc-8004.667.1 overlap by 4 nucleotides Xcc-8004.667.1 and Xcc-8004.668.1 overlap by 4 nucleotides
Xcc-8004.665.1: Xcc-8004.665.1 - FIG01211711: hypothetical protein, at 607,759 to 609,267
Xcc-8004.665.1
Xcc-8004.666.1: Xcc-8004.666.1 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein, at 609,267 to 609,914
Xcc-8004.666.1
Xcc-8004.667.1: Xcc-8004.667.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 609,911 to 610,543
Xcc-8004.667.1
Xcc-8004.668.1: Xcc-8004.668.1 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 610,540 to 611,514
Xcc-8004.668.1
Position (kb) 609
610 Strain fitness (log2 ratio) -1
0
1 at 608.268 kb on - strand, within Xcc-8004.665.1 at 608.268 kb on - strand, within Xcc-8004.665.1 at 608.540 kb on - strand, within Xcc-8004.665.1 at 608.608 kb on + strand, within Xcc-8004.665.1 at 608.914 kb on + strand, within Xcc-8004.665.1 at 608.914 kb on + strand, within Xcc-8004.665.1 at 609.079 kb on + strand, within Xcc-8004.665.1 at 609.118 kb on + strand at 609.399 kb on + strand, within Xcc-8004.666.1 at 609.399 kb on + strand, within Xcc-8004.666.1 at 609.399 kb on + strand, within Xcc-8004.666.1 at 609.400 kb on - strand, within Xcc-8004.666.1 at 609.400 kb on - strand, within Xcc-8004.666.1 at 609.400 kb on - strand, within Xcc-8004.666.1 at 609.672 kb on + strand, within Xcc-8004.666.1 at 609.672 kb on + strand, within Xcc-8004.666.1 at 609.673 kb on - strand, within Xcc-8004.666.1 at 609.673 kb on - strand, within Xcc-8004.666.1 at 610.016 kb on + strand, within Xcc-8004.667.1 at 610.017 kb on - strand, within Xcc-8004.667.1 at 610.019 kb on + strand, within Xcc-8004.667.1 at 610.020 kb on - strand, within Xcc-8004.667.1 at 610.316 kb on + strand, within Xcc-8004.667.1 at 610.317 kb on - strand, within Xcc-8004.667.1 at 610.598 kb on + strand at 610.858 kb on + strand, within Xcc-8004.668.1 at 610.879 kb on + strand, within Xcc-8004.668.1 at 610.879 kb on + strand, within Xcc-8004.668.1 at 610.880 kb on - strand, within Xcc-8004.668.1 at 610.880 kb on - strand, within Xcc-8004.668.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 608,268 - Xcc-8004.665.1 0.34 +0.3 608,268 - Xcc-8004.665.1 0.34 -0.1 608,540 - Xcc-8004.665.1 0.52 +0.1 608,608 + Xcc-8004.665.1 0.56 -0.0 608,914 + Xcc-8004.665.1 0.77 +0.2 608,914 + Xcc-8004.665.1 0.77 -1.3 609,079 + Xcc-8004.665.1 0.87 +1.1 609,118 + +0.3 609,399 + Xcc-8004.666.1 0.20 -1.1 609,399 + Xcc-8004.666.1 0.20 -1.0 609,399 + Xcc-8004.666.1 0.20 +0.8 609,400 - Xcc-8004.666.1 0.21 +0.1 609,400 - Xcc-8004.666.1 0.21 -1.1 609,400 - Xcc-8004.666.1 0.21 -0.7 609,672 + Xcc-8004.666.1 0.62 -0.2 609,672 + Xcc-8004.666.1 0.62 -1.6 609,673 - Xcc-8004.666.1 0.63 -1.4 609,673 - Xcc-8004.666.1 0.63 +0.1 610,016 + Xcc-8004.667.1 0.17 -1.5 610,017 - Xcc-8004.667.1 0.17 -0.4 610,019 + Xcc-8004.667.1 0.17 +0.0 610,020 - Xcc-8004.667.1 0.17 +1.1 610,316 + Xcc-8004.667.1 0.64 +0.1 610,317 - Xcc-8004.667.1 0.64 -1.7 610,598 + -0.1 610,858 + Xcc-8004.668.1 0.33 +0.1 610,879 + Xcc-8004.668.1 0.35 +0.4 610,879 + Xcc-8004.668.1 0.35 -0.9 610,880 - Xcc-8004.668.1 0.35 -1.2 610,880 - Xcc-8004.668.1 0.35 +1.2
Or see this region's nucleotide sequence