Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.563.1 and Xcc-8004.564.1 are separated by 167 nucleotides Xcc-8004.564.1 and Xcc-8004.566.1 overlap by 4 nucleotides Xcc-8004.566.1 and Xcc-8004.567.1 overlap by 134 nucleotides Xcc-8004.567.1 and Xcc-8004.568.1 overlap by 4 nucleotides Xcc-8004.568.1 and Xcc-8004.565.1 overlap by 76 nucleotides Xcc-8004.565.1 and Xcc-8004.569.1 overlap by 4 nucleotides Xcc-8004.569.1 and Xcc-8004.570.1 are separated by 1 nucleotides
Xcc-8004.563.1: Xcc-8004.563.1 - hypothetical protein, at 522,275 to 522,673
Xcc-8004.563.1
Xcc-8004.564.1: Xcc-8004.564.1 - Mobile element protein, at 522,841 to 523,053
Xcc-8004.564.1
Xcc-8004.566.1: Xcc-8004.566.1 - Mobile element protein, at 523,050 to 523,313
Xcc-8004.566.1
Xcc-8004.567.1: Xcc-8004.567.1 - hypothetical protein, at 523,180 to 523,356
Xcc-8004.567.1
Xcc-8004.568.1: Xcc-8004.568.1 - hypothetical protein, at 523,353 to 523,550
Xcc-8004.568.1
Xcc-8004.565.1: Xcc-8004.565.1 - Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168), at 523,475 to 524,983
Xcc-8004.565.1
Xcc-8004.569.1: Xcc-8004.569.1 - FIG01209918: hypothetical protein, at 524,980 to 525,363
Xcc-8004.569.1
Xcc-8004.570.1: Xcc-8004.570.1 - Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4), at 525,365 to 526,435
Xcc-8004.570.1
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 522.512 kb on - strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.560 kb on + strand, within Xcc-8004.563.1 at 522.561 kb on - strand, within Xcc-8004.563.1 at 522.561 kb on - strand, within Xcc-8004.563.1 at 522.561 kb on - strand, within Xcc-8004.563.1 at 522.565 kb on + strand, within Xcc-8004.563.1 at 522.565 kb on + strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.569 kb on + strand, within Xcc-8004.563.1 at 522.605 kb on - strand, within Xcc-8004.563.1 at 522.605 kb on - strand, within Xcc-8004.563.1 at 522.605 kb on - strand, within Xcc-8004.563.1 at 522.608 kb on - strand, within Xcc-8004.563.1 at 522.624 kb on + strand, within Xcc-8004.563.1 at 522.626 kb on + strand, within Xcc-8004.563.1 at 522.627 kb on - strand, within Xcc-8004.563.1 at 522.627 kb on - strand, within Xcc-8004.563.1 at 522.635 kb on + strand at 522.635 kb on + strand at 522.646 kb on - strand at 522.740 kb on + strand at 522.740 kb on + strand at 522.760 kb on + strand at 522.760 kb on + strand at 522.760 kb on + strand at 522.761 kb on - strand at 522.762 kb on + strand at 522.762 kb on + strand at 522.763 kb on - strand at 522.804 kb on + strand at 522.804 kb on + strand at 522.805 kb on - strand at 522.967 kb on + strand, within Xcc-8004.564.1 at 523.001 kb on - strand, within Xcc-8004.564.1 at 523.017 kb on - strand, within Xcc-8004.564.1 at 523.017 kb on - strand, within Xcc-8004.564.1 at 523.044 kb on + strand at 523.232 kb on + strand at 523.232 kb on + strand at 523.233 kb on - strand at 523.233 kb on - strand at 523.344 kb on + strand at 523.344 kb on + strand at 523.344 kb on + strand at 523.345 kb on - strand at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.678 kb on - strand, within Xcc-8004.565.1 at 523.719 kb on + strand, within Xcc-8004.565.1 at 523.720 kb on - strand, within Xcc-8004.565.1 at 523.836 kb on - strand, within Xcc-8004.565.1 at 523.836 kb on - strand, within Xcc-8004.565.1 at 523.857 kb on - strand, within Xcc-8004.565.1 at 524.356 kb on + strand, within Xcc-8004.565.1 at 524.378 kb on + strand, within Xcc-8004.565.1 at 524.378 kb on + strand, within Xcc-8004.565.1 at 524.378 kb on + strand, within Xcc-8004.565.1 at 524.378 kb on + strand, within Xcc-8004.565.1 at 524.379 kb on - strand, within Xcc-8004.565.1 at 524.379 kb on - strand, within Xcc-8004.565.1 at 524.379 kb on - strand, within Xcc-8004.565.1 at 524.379 kb on - strand, within Xcc-8004.565.1 at 524.379 kb on - strand, within Xcc-8004.565.1 at 524.379 kb on - strand, within Xcc-8004.565.1 at 524.379 kb on - strand, within Xcc-8004.565.1 at 524.495 kb on - strand, within Xcc-8004.565.1 at 524.867 kb on + strand at 524.867 kb on + strand at 524.870 kb on + strand at 524.870 kb on + strand at 524.870 kb on + strand at 524.870 kb on + strand at 524.870 kb on + strand at 525.107 kb on + strand, within Xcc-8004.569.1 at 525.108 kb on - strand, within Xcc-8004.569.1 at 525.108 kb on - strand, within Xcc-8004.569.1 at 525.108 kb on - strand, within Xcc-8004.569.1 at 525.158 kb on + strand, within Xcc-8004.569.1 at 525.158 kb on + strand, within Xcc-8004.569.1 at 525.159 kb on - strand, within Xcc-8004.569.1 at 525.159 kb on - strand, within Xcc-8004.569.1 at 525.327 kb on - strand at 525.327 kb on - strand at 525.451 kb on + strand at 525.451 kb on + strand at 525.451 kb on + strand at 525.451 kb on + strand at 525.451 kb on + strand at 525.462 kb on + strand at 525.462 kb on + strand at 525.462 kb on + strand at 525.463 kb on - strand at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.817 kb on - strand, within Xcc-8004.570.1 at 525.817 kb on - strand, within Xcc-8004.570.1 at 525.817 kb on - strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.882 kb on + strand, within Xcc-8004.570.1 at 525.882 kb on + strand, within Xcc-8004.570.1 at 525.882 kb on + strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 522,512 - Xcc-8004.563.1 0.59 -0.2 522,538 + Xcc-8004.563.1 0.66 -2.4 522,538 + Xcc-8004.563.1 0.66 -0.3 522,538 + Xcc-8004.563.1 0.66 -2.4 522,538 + Xcc-8004.563.1 0.66 +0.6 522,539 - Xcc-8004.563.1 0.66 -0.9 522,539 - Xcc-8004.563.1 0.66 -0.6 522,539 - Xcc-8004.563.1 0.66 -1.1 522,539 - Xcc-8004.563.1 0.66 -0.9 522,539 - Xcc-8004.563.1 0.66 -3.0 522,543 - Xcc-8004.563.1 0.67 +0.5 522,543 - Xcc-8004.563.1 0.67 +1.9 522,543 - Xcc-8004.563.1 0.67 +0.8 522,543 - Xcc-8004.563.1 0.67 -0.6 522,543 - Xcc-8004.563.1 0.67 -1.7 522,560 + Xcc-8004.563.1 0.71 -0.3 522,561 - Xcc-8004.563.1 0.72 -0.8 522,561 - Xcc-8004.563.1 0.72 +0.9 522,561 - Xcc-8004.563.1 0.72 -2.2 522,565 + Xcc-8004.563.1 0.73 +0.8 522,565 + Xcc-8004.563.1 0.73 +1.1 522,566 - Xcc-8004.563.1 0.73 +0.7 522,566 - Xcc-8004.563.1 0.73 -0.0 522,566 - Xcc-8004.563.1 0.73 +0.9 522,566 - Xcc-8004.563.1 0.73 +0.5 522,569 + Xcc-8004.563.1 0.74 -0.1 522,605 - Xcc-8004.563.1 0.83 -0.1 522,605 - Xcc-8004.563.1 0.83 +1.6 522,605 - Xcc-8004.563.1 0.83 +0.1 522,608 - Xcc-8004.563.1 0.83 -0.8 522,624 + Xcc-8004.563.1 0.87 -0.5 522,626 + Xcc-8004.563.1 0.88 +0.1 522,627 - Xcc-8004.563.1 0.88 -0.2 522,627 - Xcc-8004.563.1 0.88 +0.5 522,635 + -0.9 522,635 + +0.1 522,646 - -1.4 522,740 + +0.3 522,740 + +1.1 522,760 + -0.8 522,760 + -0.0 522,760 + -0.4 522,761 - -1.8 522,762 + -0.3 522,762 + -1.0 522,763 - +0.3 522,804 + -1.8 522,804 + +0.1 522,805 - +1.2 522,967 + Xcc-8004.564.1 0.59 +0.8 523,001 - Xcc-8004.564.1 0.75 -1.1 523,017 - Xcc-8004.564.1 0.83 +1.8 523,017 - Xcc-8004.564.1 0.83 +0.1 523,044 + +2.5 523,232 + -0.3 523,232 + +0.3 523,233 - +1.5 523,233 - -1.9 523,344 + -1.8 523,344 + -0.4 523,344 + -0.5 523,345 - +1.9 523,453 + Xcc-8004.568.1 0.51 +0.4 523,453 + Xcc-8004.568.1 0.51 -0.0 523,453 + Xcc-8004.568.1 0.51 -0.5 523,453 + Xcc-8004.568.1 0.51 +0.8 523,453 + Xcc-8004.568.1 0.51 -0.6 523,453 + Xcc-8004.568.1 0.51 -0.2 523,453 + Xcc-8004.568.1 0.51 +2.6 523,453 + Xcc-8004.568.1 0.51 +0.3 523,453 + Xcc-8004.568.1 0.51 +0.4 523,453 + Xcc-8004.568.1 0.51 +0.4 523,454 - Xcc-8004.568.1 0.51 -0.2 523,454 - Xcc-8004.568.1 0.51 -0.6 523,454 - Xcc-8004.568.1 0.51 +0.7 523,454 - Xcc-8004.568.1 0.51 +1.2 523,454 - Xcc-8004.568.1 0.51 -0.6 523,454 - Xcc-8004.568.1 0.51 -1.3 523,454 - Xcc-8004.568.1 0.51 +0.5 523,454 - Xcc-8004.568.1 0.51 +2.6 523,454 - Xcc-8004.568.1 0.51 -0.0 523,678 - Xcc-8004.565.1 0.13 -1.2 523,719 + Xcc-8004.565.1 0.16 -0.9 523,720 - Xcc-8004.565.1 0.16 -3.3 523,836 - Xcc-8004.565.1 0.24 -1.5 523,836 - Xcc-8004.565.1 0.24 -0.5 523,857 - Xcc-8004.565.1 0.25 -0.3 524,356 + Xcc-8004.565.1 0.58 -1.4 524,378 + Xcc-8004.565.1 0.60 -2.5 524,378 + Xcc-8004.565.1 0.60 +1.4 524,378 + Xcc-8004.565.1 0.60 -1.7 524,378 + Xcc-8004.565.1 0.60 -1.3 524,379 - Xcc-8004.565.1 0.60 -1.4 524,379 - Xcc-8004.565.1 0.60 -1.1 524,379 - Xcc-8004.565.1 0.60 -2.4 524,379 - Xcc-8004.565.1 0.60 -0.3 524,379 - Xcc-8004.565.1 0.60 -0.7 524,379 - Xcc-8004.565.1 0.60 +2.1 524,379 - Xcc-8004.565.1 0.60 -1.2 524,495 - Xcc-8004.565.1 0.68 -0.5 524,867 + -1.1 524,867 + -0.4 524,870 + +0.9 524,870 + -2.0 524,870 + +0.5 524,870 + -0.3 524,870 + +0.5 525,107 + Xcc-8004.569.1 0.33 -0.4 525,108 - Xcc-8004.569.1 0.33 -1.6 525,108 - Xcc-8004.569.1 0.33 +0.4 525,108 - Xcc-8004.569.1 0.33 -0.6 525,158 + Xcc-8004.569.1 0.46 +0.7 525,158 + Xcc-8004.569.1 0.46 -0.5 525,159 - Xcc-8004.569.1 0.47 -2.3 525,159 - Xcc-8004.569.1 0.47 -0.1 525,327 - +0.2 525,327 - +0.8 525,451 + -2.5 525,451 + -0.3 525,451 + -0.8 525,451 + -1.1 525,451 + +0.0 525,462 + -2.6 525,462 + -0.4 525,462 + +1.1 525,463 - +0.1 525,498 + Xcc-8004.570.1 0.12 -1.2 525,498 + Xcc-8004.570.1 0.12 -1.1 525,498 + Xcc-8004.570.1 0.12 -0.7 525,498 + Xcc-8004.570.1 0.12 -1.9 525,499 - Xcc-8004.570.1 0.13 -1.3 525,499 - Xcc-8004.570.1 0.13 -2.8 525,499 - Xcc-8004.570.1 0.13 -0.4 525,499 - Xcc-8004.570.1 0.13 +0.1 525,499 - Xcc-8004.570.1 0.13 -0.0 525,499 - Xcc-8004.570.1 0.13 +0.6 525,807 + Xcc-8004.570.1 0.41 +0.5 525,807 + Xcc-8004.570.1 0.41 -1.0 525,807 + Xcc-8004.570.1 0.41 -3.5 525,807 + Xcc-8004.570.1 0.41 -2.7 525,807 + Xcc-8004.570.1 0.41 -0.5 525,808 - Xcc-8004.570.1 0.41 -1.7 525,808 - Xcc-8004.570.1 0.41 +0.3 525,808 - Xcc-8004.570.1 0.41 -0.8 525,808 - Xcc-8004.570.1 0.41 +0.0 525,808 - Xcc-8004.570.1 0.41 -1.7 525,808 - Xcc-8004.570.1 0.41 -0.7 525,816 + Xcc-8004.570.1 0.42 -1.4 525,816 + Xcc-8004.570.1 0.42 -1.4 525,816 + Xcc-8004.570.1 0.42 -1.6 525,816 + Xcc-8004.570.1 0.42 -1.4 525,816 + Xcc-8004.570.1 0.42 -2.5 525,816 + Xcc-8004.570.1 0.42 -0.9 525,816 + Xcc-8004.570.1 0.42 +0.5 525,816 + Xcc-8004.570.1 0.42 +1.2 525,816 + Xcc-8004.570.1 0.42 -1.3 525,816 + Xcc-8004.570.1 0.42 -2.3 525,817 - Xcc-8004.570.1 0.42 +2.6 525,817 - Xcc-8004.570.1 0.42 -0.2 525,817 - Xcc-8004.570.1 0.42 -0.9 525,837 + Xcc-8004.570.1 0.44 -2.3 525,837 + Xcc-8004.570.1 0.44 -0.7 525,837 + Xcc-8004.570.1 0.44 -1.4 525,837 + Xcc-8004.570.1 0.44 -0.4 525,837 + Xcc-8004.570.1 0.44 -1.0 525,837 + Xcc-8004.570.1 0.44 -2.2 525,837 + Xcc-8004.570.1 0.44 +0.5 525,837 + Xcc-8004.570.1 0.44 -0.4 525,837 + Xcc-8004.570.1 0.44 +0.5 525,837 + Xcc-8004.570.1 0.44 +0.4 525,838 - Xcc-8004.570.1 0.44 +0.7 525,838 - Xcc-8004.570.1 0.44 -1.7 525,838 - Xcc-8004.570.1 0.44 -1.4 525,838 - Xcc-8004.570.1 0.44 -0.2 525,838 - Xcc-8004.570.1 0.44 -2.5 525,838 - Xcc-8004.570.1 0.44 -0.7 525,838 - Xcc-8004.570.1 0.44 -1.9 525,838 - Xcc-8004.570.1 0.44 -1.7 525,838 - Xcc-8004.570.1 0.44 +0.1 525,838 - Xcc-8004.570.1 0.44 -0.4 525,838 - Xcc-8004.570.1 0.44 -1.5 525,838 - Xcc-8004.570.1 0.44 +0.1 525,838 - Xcc-8004.570.1 0.44 -0.6 525,838 - Xcc-8004.570.1 0.44 -0.5 525,882 + Xcc-8004.570.1 0.48 -0.7 525,882 + Xcc-8004.570.1 0.48 -1.4 525,882 + Xcc-8004.570.1 0.48 -1.6 525,883 - Xcc-8004.570.1 0.48 +1.1 525,883 - Xcc-8004.570.1 0.48 -0.7 525,883 - Xcc-8004.570.1 0.48 -2.0 525,883 - Xcc-8004.570.1 0.48 -2.4
Or see this region's nucleotide sequence