Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5353.1 and Xcc-8004.5354.1 overlap by 4 nucleotides Xcc-8004.5354.1 and Xcc-8004.5356.1 are separated by 295 nucleotides
Xcc-8004.5353.1: Xcc-8004.5353.1 - Exodeoxyribonuclease V beta chain (EC 3.1.11.5), at 5,081,732 to 5,085,850
Xcc-8004.5353.1
Xcc-8004.5354.1: Xcc-8004.5354.1 - Exodeoxyribonuclease V gamma chain (EC 3.1.11.5), at 5,085,847 to 5,089,251
Xcc-8004.5354.1
Xcc-8004.5356.1: Xcc-8004.5356.1 - Fibronectin type III domain protein, at 5,089,547 to 5,094,775
Xcc-8004.5356.1
Position (kb) 5085
5086
5087
5088
5089
5090 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 5085.806 kb on + strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5086.808 kb on - strand, within Xcc-8004.5354.1 at 5087.474 kb on - strand, within Xcc-8004.5354.1 at 5088.695 kb on + strand, within Xcc-8004.5354.1 at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.302 kb on + strand at 5089.303 kb on - strand at 5089.303 kb on - strand at 5089.303 kb on - strand at 5089.303 kb on - strand at 5089.303 kb on - strand at 5089.303 kb on - strand at 5089.303 kb on - strand at 5089.362 kb on + strand at 5089.362 kb on + strand at 5089.362 kb on + strand at 5089.362 kb on + strand at 5089.362 kb on + strand at 5089.362 kb on + strand at 5089.362 kb on + strand at 5089.363 kb on - strand at 5089.363 kb on - strand at 5089.399 kb on + strand at 5089.399 kb on + strand at 5089.399 kb on + strand at 5089.399 kb on + strand at 5089.399 kb on + strand at 5089.400 kb on - strand at 5089.400 kb on - strand at 5089.400 kb on - strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.407 kb on + strand at 5089.408 kb on - strand at 5089.408 kb on - strand at 5089.408 kb on - strand at 5089.408 kb on - strand at 5089.408 kb on - strand at 5089.408 kb on - strand at 5089.408 kb on - strand at 5089.408 kb on - strand at 5089.423 kb on + strand at 5089.423 kb on + strand at 5089.423 kb on + strand at 5089.424 kb on - strand at 5089.424 kb on - strand at 5089.424 kb on - strand at 5089.424 kb on - strand at 5089.424 kb on - strand at 5089.424 kb on - strand at 5089.441 kb on + strand at 5089.442 kb on - strand at 5089.442 kb on - strand at 5089.466 kb on + strand at 5089.466 kb on + strand at 5089.466 kb on + strand at 5089.467 kb on - strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.498 kb on + strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.499 kb on - strand at 5089.551 kb on + strand at 5089.551 kb on + strand at 5089.551 kb on + strand at 5089.551 kb on + strand at 5089.551 kb on + strand at 5089.552 kb on - strand at 5089.552 kb on - strand at 5089.552 kb on - strand at 5089.552 kb on - strand at 5089.617 kb on + strand at 5089.618 kb on - strand at 5089.667 kb on - strand at 5089.713 kb on + strand at 5089.713 kb on + strand at 5089.714 kb on - strand at 5089.714 kb on - strand at 5089.714 kb on - strand at 5089.714 kb on - strand at 5089.740 kb on + strand at 5089.741 kb on - strand at 5089.741 kb on - strand at 5089.741 kb on - strand at 5089.782 kb on + strand at 5089.782 kb on + strand at 5089.783 kb on - strand at 5089.887 kb on + strand at 5089.887 kb on + strand at 5089.888 kb on - strand at 5089.888 kb on - strand at 5089.888 kb on - strand at 5089.923 kb on + strand at 5089.923 kb on + strand at 5089.923 kb on + strand at 5089.923 kb on + strand at 5089.923 kb on + strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.924 kb on - strand at 5089.963 kb on - strand at 5090.088 kb on + strand, within Xcc-8004.5356.1 at 5090.088 kb on + strand, within Xcc-8004.5356.1 at 5090.088 kb on + strand, within Xcc-8004.5356.1 at 5090.088 kb on + strand, within Xcc-8004.5356.1 at 5090.088 kb on + strand, within Xcc-8004.5356.1 at 5090.088 kb on + strand, within Xcc-8004.5356.1 at 5090.089 kb on - strand, within Xcc-8004.5356.1 at 5090.089 kb on - strand, within Xcc-8004.5356.1 at 5090.104 kb on - strand, within Xcc-8004.5356.1 at 5090.104 kb on - strand, within Xcc-8004.5356.1 at 5090.154 kb on + strand, within Xcc-8004.5356.1 at 5090.154 kb on + strand, within Xcc-8004.5356.1 at 5090.154 kb on + strand, within Xcc-8004.5356.1 at 5090.154 kb on + strand, within Xcc-8004.5356.1 at 5090.155 kb on - strand, within Xcc-8004.5356.1 at 5090.155 kb on - strand, within Xcc-8004.5356.1 at 5090.155 kb on - strand, within Xcc-8004.5356.1 at 5090.155 kb on - strand, within Xcc-8004.5356.1 at 5090.155 kb on - strand, within Xcc-8004.5356.1 at 5090.169 kb on + strand, within Xcc-8004.5356.1 at 5090.169 kb on + strand, within Xcc-8004.5356.1 at 5090.169 kb on + strand, within Xcc-8004.5356.1 at 5090.170 kb on - strand, within Xcc-8004.5356.1 at 5090.170 kb on - strand, within Xcc-8004.5356.1 at 5090.204 kb on + strand, within Xcc-8004.5356.1 at 5090.204 kb on + strand, within Xcc-8004.5356.1 at 5090.204 kb on + strand, within Xcc-8004.5356.1 at 5090.204 kb on + strand, within Xcc-8004.5356.1 at 5090.204 kb on + strand, within Xcc-8004.5356.1 at 5090.204 kb on + strand, within Xcc-8004.5356.1 at 5090.204 kb on + strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1 at 5090.205 kb on - strand, within Xcc-8004.5356.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 5,085,806 + -0.4 5,085,823 - -0.6 5,085,823 - -0.6 5,085,823 - +3.7 5,085,823 - +1.8 5,085,823 - +1.2 5,085,823 - -0.2 5,085,823 - +1.0 5,086,808 - Xcc-8004.5354.1 0.28 +0.0 5,087,474 - Xcc-8004.5354.1 0.48 -1.4 5,088,695 + Xcc-8004.5354.1 0.84 +1.0 5,089,302 + +1.6 5,089,302 + -0.4 5,089,302 + +0.4 5,089,302 + +0.5 5,089,302 + -2.1 5,089,302 + -0.9 5,089,302 + -0.2 5,089,302 + -0.7 5,089,302 + -0.4 5,089,303 - -0.5 5,089,303 - -0.0 5,089,303 - -0.2 5,089,303 - +0.3 5,089,303 - -0.7 5,089,303 - -1.2 5,089,303 - +1.1 5,089,362 + +2.4 5,089,362 + +0.9 5,089,362 + -2.3 5,089,362 + -1.1 5,089,362 + -0.9 5,089,362 + -0.7 5,089,362 + -0.5 5,089,363 - +0.6 5,089,363 - -0.4 5,089,399 + +2.7 5,089,399 + +0.8 5,089,399 + -0.3 5,089,399 + -1.6 5,089,399 + -0.6 5,089,400 - +0.0 5,089,400 - -2.3 5,089,400 - +1.0 5,089,407 + +0.6 5,089,407 + +1.2 5,089,407 + -0.8 5,089,407 + -0.2 5,089,407 + -2.5 5,089,407 + -2.3 5,089,407 + +0.2 5,089,407 + -1.0 5,089,407 + -1.4 5,089,407 + -0.9 5,089,407 + -0.2 5,089,407 + +2.6 5,089,407 + +0.1 5,089,407 + -0.4 5,089,407 + -0.2 5,089,408 - -1.6 5,089,408 - -0.6 5,089,408 - -2.4 5,089,408 - +0.8 5,089,408 - +0.9 5,089,408 - +1.1 5,089,408 - +0.5 5,089,408 - +0.3 5,089,423 + +0.0 5,089,423 + +0.2 5,089,423 + -0.8 5,089,424 - -0.0 5,089,424 - -0.8 5,089,424 - +1.0 5,089,424 - -0.3 5,089,424 - +0.0 5,089,424 - -0.5 5,089,441 + -0.0 5,089,442 - +1.8 5,089,442 - +1.2 5,089,466 + -0.6 5,089,466 + +0.9 5,089,466 + +0.2 5,089,467 - -0.7 5,089,498 + +0.3 5,089,498 + +1.8 5,089,498 + -0.3 5,089,498 + +0.2 5,089,498 + -0.0 5,089,498 + +0.7 5,089,498 + +1.1 5,089,498 + +0.8 5,089,498 + +2.1 5,089,498 + +0.9 5,089,498 + +8.5 5,089,498 + -0.3 5,089,498 + +0.2 5,089,498 + -2.7 5,089,498 + -0.1 5,089,499 - -3.0 5,089,499 - +1.0 5,089,499 - +4.0 5,089,499 - -0.1 5,089,499 - -0.6 5,089,499 - -0.6 5,089,499 - -1.2 5,089,499 - -0.2 5,089,499 - -0.5 5,089,499 - +1.3 5,089,499 - +1.5 5,089,499 - -2.1 5,089,499 - +0.2 5,089,551 + +0.2 5,089,551 + -0.4 5,089,551 + +0.9 5,089,551 + +0.3 5,089,551 + -0.4 5,089,552 - -0.8 5,089,552 - +0.2 5,089,552 - -0.6 5,089,552 - -0.3 5,089,617 + -0.2 5,089,618 - -0.1 5,089,667 - -1.4 5,089,713 + -0.1 5,089,713 + +0.3 5,089,714 - -0.9 5,089,714 - +0.8 5,089,714 - +3.6 5,089,714 - +0.4 5,089,740 + +0.7 5,089,741 - -0.4 5,089,741 - -0.6 5,089,741 - +2.0 5,089,782 + -0.4 5,089,782 + -0.9 5,089,783 - -2.1 5,089,887 + +1.0 5,089,887 + +1.6 5,089,888 - +0.4 5,089,888 - +0.1 5,089,888 - +0.0 5,089,923 + +0.6 5,089,923 + +1.2 5,089,923 + +0.3 5,089,923 + -0.3 5,089,923 + +0.4 5,089,924 - +1.3 5,089,924 - -0.2 5,089,924 - +0.7 5,089,924 - +2.3 5,089,924 - +0.2 5,089,924 - +0.8 5,089,924 - -0.5 5,089,924 - +0.3 5,089,924 - -0.2 5,089,963 - -0.8 5,090,088 + Xcc-8004.5356.1 0.10 -2.8 5,090,088 + Xcc-8004.5356.1 0.10 +0.1 5,090,088 + Xcc-8004.5356.1 0.10 +1.0 5,090,088 + Xcc-8004.5356.1 0.10 +2.6 5,090,088 + Xcc-8004.5356.1 0.10 -0.7 5,090,088 + Xcc-8004.5356.1 0.10 -0.0 5,090,089 - Xcc-8004.5356.1 0.10 -0.1 5,090,089 - Xcc-8004.5356.1 0.10 -0.7 5,090,104 - Xcc-8004.5356.1 0.11 -0.2 5,090,104 - Xcc-8004.5356.1 0.11 +0.5 5,090,154 + Xcc-8004.5356.1 0.12 -1.6 5,090,154 + Xcc-8004.5356.1 0.12 -0.7 5,090,154 + Xcc-8004.5356.1 0.12 -1.2 5,090,154 + Xcc-8004.5356.1 0.12 -1.5 5,090,155 - Xcc-8004.5356.1 0.12 +0.8 5,090,155 - Xcc-8004.5356.1 0.12 -0.7 5,090,155 - Xcc-8004.5356.1 0.12 -1.3 5,090,155 - Xcc-8004.5356.1 0.12 -0.7 5,090,155 - Xcc-8004.5356.1 0.12 -0.1 5,090,169 + Xcc-8004.5356.1 0.12 +1.4 5,090,169 + Xcc-8004.5356.1 0.12 -0.3 5,090,169 + Xcc-8004.5356.1 0.12 -2.3 5,090,170 - Xcc-8004.5356.1 0.12 -0.0 5,090,170 - Xcc-8004.5356.1 0.12 -0.6 5,090,204 + Xcc-8004.5356.1 0.13 -0.2 5,090,204 + Xcc-8004.5356.1 0.13 -0.8 5,090,204 + Xcc-8004.5356.1 0.13 +1.6 5,090,204 + Xcc-8004.5356.1 0.13 +0.2 5,090,204 + Xcc-8004.5356.1 0.13 -0.8 5,090,204 + Xcc-8004.5356.1 0.13 +0.0 5,090,204 + Xcc-8004.5356.1 0.13 -0.4 5,090,205 - Xcc-8004.5356.1 0.13 +0.6 5,090,205 - Xcc-8004.5356.1 0.13 -1.1 5,090,205 - Xcc-8004.5356.1 0.13 +0.2 5,090,205 - Xcc-8004.5356.1 0.13 +0.3 5,090,205 - Xcc-8004.5356.1 0.13 -1.9 5,090,205 - Xcc-8004.5356.1 0.13 +0.7 5,090,205 - Xcc-8004.5356.1 0.13 -0.5 5,090,205 - Xcc-8004.5356.1 0.13 -3.1 5,090,205 - Xcc-8004.5356.1 0.13 -0.2 5,090,205 - Xcc-8004.5356.1 0.13 +1.1
Or see this region's nucleotide sequence