Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3948.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3947.1 and Xcc-8004.3948.1 are separated by 187 nucleotidesXcc-8004.3948.1 and Xcc-8004.3949.1 are separated by 80 nucleotides Xcc-8004.3947.1: Xcc-8004.3947.1 - FIG01210742: hypothetical protein, at 3,822,041 to 3,823,114 Xcc-8004.3947.1 Xcc-8004.3948.1: Xcc-8004.3948.1 - FIG01211207: hypothetical protein, at 3,823,302 to 3,824,162 Xcc-8004.3948.1 Xcc-8004.3949.1: Xcc-8004.3949.1 - Aminopeptidase N, at 3,824,243 to 3,826,915 Xcc-8004.3949.1 Position (kb) 3823 3824 3825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3822.591 kb on + strand, within Xcc-8004.3947.1at 3822.674 kb on + strand, within Xcc-8004.3947.1at 3822.675 kb on - strand, within Xcc-8004.3947.1at 3822.713 kb on + strand, within Xcc-8004.3947.1at 3822.714 kb on - strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.854 kb on - strand, within Xcc-8004.3947.1at 3822.854 kb on - strand, within Xcc-8004.3947.1at 3822.854 kb on - strand, within Xcc-8004.3947.1at 3823.109 kb on - strandat 3823.142 kb on + strandat 3823.143 kb on - strandat 3823.246 kb on + strandat 3823.246 kb on + strandat 3823.453 kb on + strand, within Xcc-8004.3948.1at 3823.453 kb on + strand, within Xcc-8004.3948.1at 3823.454 kb on - strand, within Xcc-8004.3948.1at 3823.494 kb on + strand, within Xcc-8004.3948.1at 3823.859 kb on + strand, within Xcc-8004.3948.1at 3823.859 kb on + strand, within Xcc-8004.3948.1at 3823.859 kb on + strand, within Xcc-8004.3948.1at 3823.860 kb on - strand, within Xcc-8004.3948.1at 3823.860 kb on - strand, within Xcc-8004.3948.1at 3823.982 kb on - strand, within Xcc-8004.3948.1at 3823.983 kb on - strand, within Xcc-8004.3948.1at 3824.109 kb on - strandat 3824.199 kb on + strandat 3824.199 kb on + strandat 3824.364 kb on + strandat 3824.365 kb on - strandat 3824.459 kb on + strandat 3824.460 kb on - strandat 3824.471 kb on + strandat 3824.637 kb on + strand, within Xcc-8004.3949.1at 3824.640 kb on + strand, within Xcc-8004.3949.1at 3824.640 kb on + strand, within Xcc-8004.3949.1at 3824.641 kb on - strand, within Xcc-8004.3949.1at 3824.687 kb on + strand, within Xcc-8004.3949.1at 3824.688 kb on - strand, within Xcc-8004.3949.1at 3825.050 kb on + strand, within Xcc-8004.3949.1at 3825.089 kb on + strand, within Xcc-8004.3949.1at 3825.090 kb on - strand, within Xcc-8004.3949.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,822,591 + Xcc-8004.3947.1 0.51 +0.5
3,822,674 + Xcc-8004.3947.1 0.59 -0.6
3,822,675 - Xcc-8004.3947.1 0.59 +0.5
3,822,713 + Xcc-8004.3947.1 0.63 +0.2
3,822,714 - Xcc-8004.3947.1 0.63 +0.2
3,822,853 + Xcc-8004.3947.1 0.76 +1.0
3,822,853 + Xcc-8004.3947.1 0.76 -0.7
3,822,853 + Xcc-8004.3947.1 0.76 +0.4
3,822,853 + Xcc-8004.3947.1 0.76 +2.2
3,822,853 + Xcc-8004.3947.1 0.76 -0.2
3,822,854 - Xcc-8004.3947.1 0.76 -2.8
3,822,854 - Xcc-8004.3947.1 0.76 -0.6
3,822,854 - Xcc-8004.3947.1 0.76 -0.4
3,823,109 - -0.6
3,823,142 + +1.5
3,823,143 - -0.2
3,823,246 + -0.3
3,823,246 + -1.2
3,823,453 + Xcc-8004.3948.1 0.18 -0.9
3,823,453 + Xcc-8004.3948.1 0.18 -0.9
3,823,454 - Xcc-8004.3948.1 0.18 +0.1
3,823,494 + Xcc-8004.3948.1 0.22 -0.5
3,823,859 + Xcc-8004.3948.1 0.65 -2.2
3,823,859 + Xcc-8004.3948.1 0.65 +0.2
3,823,859 + Xcc-8004.3948.1 0.65 +0.1
3,823,860 - Xcc-8004.3948.1 0.65 +0.3
3,823,860 - Xcc-8004.3948.1 0.65 -0.9
3,823,982 - Xcc-8004.3948.1 0.79 -1.7
3,823,983 - Xcc-8004.3948.1 0.79 -0.9
3,824,109 - -0.5
3,824,199 + +1.3
3,824,199 + -0.3
3,824,364 + +0.0
3,824,365 - +1.6
3,824,459 + +0.6
3,824,460 - -0.4
3,824,471 + -1.7
3,824,637 + Xcc-8004.3949.1 0.15 -2.5
3,824,640 + Xcc-8004.3949.1 0.15 +0.2
3,824,640 + Xcc-8004.3949.1 0.15 +1.2
3,824,641 - Xcc-8004.3949.1 0.15 -0.1
3,824,687 + Xcc-8004.3949.1 0.17 +0.7
3,824,688 - Xcc-8004.3949.1 0.17 -0.2
3,825,050 + Xcc-8004.3949.1 0.30 +0.8
3,825,089 + Xcc-8004.3949.1 0.32 -0.2
3,825,090 - Xcc-8004.3949.1 0.32 -0.2

Or see this region's nucleotide sequence