Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3692.1 and Xcc-8004.3693.1 overlap by 4 nucleotides
Xcc-8004.3692.1: Xcc-8004.3692.1 - Beta-galactosidase (EC 3.2.1.23), at 3,574,081 to 3,575,289
Xcc-8004.3692.1
Xcc-8004.3693.1: Xcc-8004.3693.1 - Beta-galactosidase (EC 3.2.1.23), at 3,575,286 to 3,577,853
Xcc-8004.3693.1
Position (kb) 3575
3576
3577
3578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 3574.328 kb on - strand, within Xcc-8004.3692.1 at 3574.328 kb on - strand, within Xcc-8004.3692.1 at 3574.389 kb on - strand, within Xcc-8004.3692.1 at 3574.405 kb on + strand, within Xcc-8004.3692.1 at 3574.507 kb on + strand, within Xcc-8004.3692.1 at 3574.508 kb on - strand, within Xcc-8004.3692.1 at 3574.508 kb on - strand, within Xcc-8004.3692.1 at 3574.804 kb on + strand, within Xcc-8004.3692.1 at 3574.804 kb on + strand, within Xcc-8004.3692.1 at 3574.804 kb on + strand, within Xcc-8004.3692.1 at 3574.804 kb on + strand, within Xcc-8004.3692.1 at 3574.805 kb on - strand, within Xcc-8004.3692.1 at 3574.807 kb on + strand, within Xcc-8004.3692.1 at 3574.808 kb on - strand, within Xcc-8004.3692.1 at 3575.005 kb on + strand, within Xcc-8004.3692.1 at 3575.006 kb on - strand, within Xcc-8004.3692.1 at 3575.006 kb on - strand, within Xcc-8004.3692.1 at 3575.194 kb on + strand at 3575.194 kb on + strand at 3575.194 kb on + strand at 3575.195 kb on - strand at 3575.767 kb on - strand, within Xcc-8004.3693.1 at 3575.932 kb on - strand, within Xcc-8004.3693.1 at 3575.932 kb on - strand, within Xcc-8004.3693.1 at 3575.991 kb on + strand, within Xcc-8004.3693.1 at 3575.991 kb on + strand, within Xcc-8004.3693.1 at 3575.992 kb on - strand, within Xcc-8004.3693.1 at 3575.992 kb on - strand, within Xcc-8004.3693.1 at 3576.010 kb on - strand, within Xcc-8004.3693.1 at 3576.010 kb on - strand, within Xcc-8004.3693.1 at 3576.181 kb on - strand, within Xcc-8004.3693.1 at 3576.307 kb on - strand, within Xcc-8004.3693.1 at 3576.307 kb on - strand, within Xcc-8004.3693.1 at 3576.409 kb on + strand, within Xcc-8004.3693.1 at 3576.410 kb on - strand, within Xcc-8004.3693.1 at 3576.446 kb on + strand, within Xcc-8004.3693.1 at 3576.446 kb on + strand, within Xcc-8004.3693.1 at 3576.447 kb on - strand, within Xcc-8004.3693.1 at 3576.809 kb on + strand, within Xcc-8004.3693.1 at 3576.810 kb on - strand, within Xcc-8004.3693.1 at 3576.876 kb on + strand, within Xcc-8004.3693.1 at 3576.877 kb on - strand, within Xcc-8004.3693.1 at 3576.877 kb on - strand, within Xcc-8004.3693.1 at 3576.912 kb on + strand, within Xcc-8004.3693.1 at 3576.930 kb on + strand, within Xcc-8004.3693.1 at 3576.930 kb on + strand, within Xcc-8004.3693.1 at 3576.931 kb on - strand, within Xcc-8004.3693.1 at 3576.931 kb on - strand, within Xcc-8004.3693.1 at 3576.973 kb on - strand, within Xcc-8004.3693.1 at 3576.973 kb on - strand, within Xcc-8004.3693.1 at 3577.059 kb on + strand, within Xcc-8004.3693.1 at 3577.060 kb on - strand, within Xcc-8004.3693.1 at 3577.060 kb on - strand, within Xcc-8004.3693.1 at 3577.077 kb on + strand, within Xcc-8004.3693.1 at 3577.134 kb on + strand, within Xcc-8004.3693.1 at 3577.135 kb on - strand, within Xcc-8004.3693.1 at 3577.135 kb on - strand, within Xcc-8004.3693.1 at 3577.135 kb on - strand, within Xcc-8004.3693.1 at 3577.178 kb on + strand, within Xcc-8004.3693.1 at 3577.178 kb on + strand, within Xcc-8004.3693.1 at 3577.179 kb on - strand, within Xcc-8004.3693.1 at 3577.203 kb on + strand, within Xcc-8004.3693.1 at 3577.203 kb on + strand, within Xcc-8004.3693.1 at 3577.204 kb on - strand, within Xcc-8004.3693.1 at 3577.342 kb on + strand, within Xcc-8004.3693.1 at 3577.343 kb on - strand, within Xcc-8004.3693.1 at 3577.343 kb on - strand, within Xcc-8004.3693.1 at 3577.343 kb on - strand, within Xcc-8004.3693.1 at 3577.597 kb on + strand at 3577.598 kb on - strand at 3577.727 kb on + strand at 3577.728 kb on - strand at 3577.728 kb on - strand at 3577.948 kb on - strand at 3577.948 kb on - strand at 3577.987 kb on - strand at 3578.034 kb on + strand at 3578.035 kb on - strand at 3578.035 kb on - strand at 3578.035 kb on - strand at 3578.229 kb on + strand at 3578.230 kb on - strand at 3578.230 kb on - strand at 3578.368 kb on + strand at 3578.431 kb on - strand at 3578.431 kb on - strand at 3578.466 kb on - strand at 3578.591 kb on + strand at 3578.606 kb on + strand at 3578.662 kb on + strand at 3578.768 kb on - strand at 3578.787 kb on + strand at 3578.803 kb on - strand at 3578.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 3,574,328 - Xcc-8004.3692.1 0.20 +0.9 3,574,328 - Xcc-8004.3692.1 0.20 +6.1 3,574,389 - Xcc-8004.3692.1 0.25 +0.9 3,574,405 + Xcc-8004.3692.1 0.27 -0.8 3,574,507 + Xcc-8004.3692.1 0.35 +1.5 3,574,508 - Xcc-8004.3692.1 0.35 +1.3 3,574,508 - Xcc-8004.3692.1 0.35 +0.9 3,574,804 + Xcc-8004.3692.1 0.60 +0.0 3,574,804 + Xcc-8004.3692.1 0.60 -1.4 3,574,804 + Xcc-8004.3692.1 0.60 -0.6 3,574,804 + Xcc-8004.3692.1 0.60 -0.4 3,574,805 - Xcc-8004.3692.1 0.60 +1.1 3,574,807 + Xcc-8004.3692.1 0.60 -0.3 3,574,808 - Xcc-8004.3692.1 0.60 -0.8 3,575,005 + Xcc-8004.3692.1 0.76 +0.2 3,575,006 - Xcc-8004.3692.1 0.77 +0.5 3,575,006 - Xcc-8004.3692.1 0.77 -0.4 3,575,194 + +0.9 3,575,194 + +0.3 3,575,194 + +1.6 3,575,195 - +0.2 3,575,767 - Xcc-8004.3693.1 0.19 -1.6 3,575,932 - Xcc-8004.3693.1 0.25 +0.8 3,575,932 - Xcc-8004.3693.1 0.25 -0.7 3,575,991 + Xcc-8004.3693.1 0.27 -0.6 3,575,991 + Xcc-8004.3693.1 0.27 -0.3 3,575,992 - Xcc-8004.3693.1 0.27 -0.3 3,575,992 - Xcc-8004.3693.1 0.27 -1.1 3,576,010 - Xcc-8004.3693.1 0.28 -0.1 3,576,010 - Xcc-8004.3693.1 0.28 +1.0 3,576,181 - Xcc-8004.3693.1 0.35 -0.4 3,576,307 - Xcc-8004.3693.1 0.40 -0.3 3,576,307 - Xcc-8004.3693.1 0.40 -0.1 3,576,409 + Xcc-8004.3693.1 0.44 +0.2 3,576,410 - Xcc-8004.3693.1 0.44 +0.0 3,576,446 + Xcc-8004.3693.1 0.45 -2.7 3,576,446 + Xcc-8004.3693.1 0.45 +0.2 3,576,447 - Xcc-8004.3693.1 0.45 -1.3 3,576,809 + Xcc-8004.3693.1 0.59 -1.1 3,576,810 - Xcc-8004.3693.1 0.59 -1.5 3,576,876 + Xcc-8004.3693.1 0.62 -0.5 3,576,877 - Xcc-8004.3693.1 0.62 -1.2 3,576,877 - Xcc-8004.3693.1 0.62 -0.4 3,576,912 + Xcc-8004.3693.1 0.63 +0.6 3,576,930 + Xcc-8004.3693.1 0.64 -0.5 3,576,930 + Xcc-8004.3693.1 0.64 -1.9 3,576,931 - Xcc-8004.3693.1 0.64 -1.4 3,576,931 - Xcc-8004.3693.1 0.64 +0.0 3,576,973 - Xcc-8004.3693.1 0.66 -3.3 3,576,973 - Xcc-8004.3693.1 0.66 -0.3 3,577,059 + Xcc-8004.3693.1 0.69 +0.7 3,577,060 - Xcc-8004.3693.1 0.69 +0.0 3,577,060 - Xcc-8004.3693.1 0.69 +1.4 3,577,077 + Xcc-8004.3693.1 0.70 -0.7 3,577,134 + Xcc-8004.3693.1 0.72 -1.8 3,577,135 - Xcc-8004.3693.1 0.72 -1.8 3,577,135 - Xcc-8004.3693.1 0.72 -0.5 3,577,135 - Xcc-8004.3693.1 0.72 -1.0 3,577,178 + Xcc-8004.3693.1 0.74 +1.6 3,577,178 + Xcc-8004.3693.1 0.74 -0.5 3,577,179 - Xcc-8004.3693.1 0.74 +0.2 3,577,203 + Xcc-8004.3693.1 0.75 -1.6 3,577,203 + Xcc-8004.3693.1 0.75 +0.5 3,577,204 - Xcc-8004.3693.1 0.75 +1.4 3,577,342 + Xcc-8004.3693.1 0.80 +0.8 3,577,343 - Xcc-8004.3693.1 0.80 +0.9 3,577,343 - Xcc-8004.3693.1 0.80 +0.2 3,577,343 - Xcc-8004.3693.1 0.80 +2.9 3,577,597 + +0.5 3,577,598 - +0.3 3,577,727 + -0.7 3,577,728 - -0.5 3,577,728 - -1.7 3,577,948 - -0.6 3,577,948 - -0.8 3,577,987 - -2.2 3,578,034 + -1.3 3,578,035 - -1.4 3,578,035 - +0.5 3,578,035 - +0.9 3,578,229 + +0.7 3,578,230 - -1.0 3,578,230 - -1.0 3,578,368 + -0.5 3,578,431 - -0.4 3,578,431 - -1.4 3,578,466 - +0.6 3,578,591 + +1.5 3,578,606 + -0.1 3,578,662 + +0.0 3,578,768 - -0.1 3,578,787 + +1.2 3,578,803 - -1.4 3,578,803 - -0.4
Or see this region's nucleotide sequence