Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2146.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2145.1 and Xcc-8004.2146.1 overlap by 4 nucleotidesXcc-8004.2146.1 and Xcc-8004.2147.1 are separated by 195 nucleotides Xcc-8004.2145.1: Xcc-8004.2145.1 - Xylosidase/arabinosidase ass w/ COG3533, at 2,067,223 to 2,068,821 Xcc-8004.2145.1 Xcc-8004.2146.1: Xcc-8004.2146.1 - dipeptidyl peptidase IV, at 2,068,818 to 2,071,238 Xcc-8004.2146.1 Xcc-8004.2147.1: Xcc-8004.2147.1 - avirulence protein, at 2,071,434 to 2,073,200 Xcc-8004.2147.1 Position (kb) 2068 2069 2070 2071 2072Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2067.818 kb on - strand, within Xcc-8004.2145.1at 2067.818 kb on - strand, within Xcc-8004.2145.1at 2067.818 kb on - strand, within Xcc-8004.2145.1at 2067.824 kb on - strand, within Xcc-8004.2145.1at 2067.848 kb on - strand, within Xcc-8004.2145.1at 2067.848 kb on - strand, within Xcc-8004.2145.1at 2067.959 kb on - strand, within Xcc-8004.2145.1at 2067.959 kb on - strand, within Xcc-8004.2145.1at 2067.961 kb on + strand, within Xcc-8004.2145.1at 2067.962 kb on - strand, within Xcc-8004.2145.1at 2067.970 kb on + strand, within Xcc-8004.2145.1at 2067.971 kb on - strand, within Xcc-8004.2145.1at 2067.971 kb on - strand, within Xcc-8004.2145.1at 2068.036 kb on + strand, within Xcc-8004.2145.1at 2068.037 kb on - strand, within Xcc-8004.2145.1at 2068.147 kb on + strand, within Xcc-8004.2145.1at 2068.147 kb on + strand, within Xcc-8004.2145.1at 2068.148 kb on - strand, within Xcc-8004.2145.1at 2068.156 kb on + strand, within Xcc-8004.2145.1at 2068.157 kb on - strand, within Xcc-8004.2145.1at 2068.157 kb on - strand, within Xcc-8004.2145.1at 2068.465 kb on + strand, within Xcc-8004.2145.1at 2068.465 kb on + strand, within Xcc-8004.2145.1at 2068.466 kb on - strand, within Xcc-8004.2145.1at 2068.621 kb on + strand, within Xcc-8004.2145.1at 2068.751 kb on + strandat 2068.751 kb on + strandat 2068.752 kb on - strandat 2069.028 kb on + strandat 2069.028 kb on + strandat 2069.353 kb on + strand, within Xcc-8004.2146.1at 2069.353 kb on + strand, within Xcc-8004.2146.1at 2069.353 kb on + strand, within Xcc-8004.2146.1at 2069.354 kb on - strand, within Xcc-8004.2146.1at 2069.354 kb on - strand, within Xcc-8004.2146.1at 2069.354 kb on - strand, within Xcc-8004.2146.1at 2069.562 kb on + strand, within Xcc-8004.2146.1at 2069.563 kb on - strand, within Xcc-8004.2146.1at 2069.563 kb on - strand, within Xcc-8004.2146.1at 2069.647 kb on - strand, within Xcc-8004.2146.1at 2069.649 kb on + strand, within Xcc-8004.2146.1at 2069.649 kb on + strand, within Xcc-8004.2146.1at 2069.650 kb on - strand, within Xcc-8004.2146.1at 2069.703 kb on + strand, within Xcc-8004.2146.1at 2069.860 kb on - strand, within Xcc-8004.2146.1at 2069.961 kb on + strand, within Xcc-8004.2146.1at 2069.962 kb on - strand, within Xcc-8004.2146.1at 2070.072 kb on + strand, within Xcc-8004.2146.1at 2070.073 kb on - strand, within Xcc-8004.2146.1at 2070.073 kb on - strand, within Xcc-8004.2146.1at 2070.078 kb on + strand, within Xcc-8004.2146.1at 2070.078 kb on + strand, within Xcc-8004.2146.1at 2070.174 kb on + strand, within Xcc-8004.2146.1at 2070.174 kb on + strand, within Xcc-8004.2146.1at 2070.174 kb on + strand, within Xcc-8004.2146.1at 2070.174 kb on + strand, within Xcc-8004.2146.1at 2070.174 kb on + strand, within Xcc-8004.2146.1at 2070.175 kb on - strand, within Xcc-8004.2146.1at 2070.214 kb on - strand, within Xcc-8004.2146.1at 2070.214 kb on - strand, within Xcc-8004.2146.1at 2070.216 kb on + strand, within Xcc-8004.2146.1at 2070.391 kb on + strand, within Xcc-8004.2146.1at 2070.415 kb on + strand, within Xcc-8004.2146.1at 2070.415 kb on + strand, within Xcc-8004.2146.1at 2070.415 kb on + strand, within Xcc-8004.2146.1at 2070.416 kb on - strand, within Xcc-8004.2146.1at 2070.552 kb on + strand, within Xcc-8004.2146.1at 2070.552 kb on + strand, within Xcc-8004.2146.1at 2070.552 kb on + strand, within Xcc-8004.2146.1at 2070.553 kb on - strand, within Xcc-8004.2146.1at 2070.558 kb on + strand, within Xcc-8004.2146.1at 2070.708 kb on - strand, within Xcc-8004.2146.1at 2070.771 kb on + strand, within Xcc-8004.2146.1at 2070.772 kb on - strand, within Xcc-8004.2146.1at 2071.336 kb on + strandat 2071.468 kb on + strandat 2071.469 kb on - strandat 2071.783 kb on - strand, within Xcc-8004.2147.1at 2071.833 kb on + strand, within Xcc-8004.2147.1at 2072.067 kb on + strand, within Xcc-8004.2147.1at 2072.096 kb on + strand, within Xcc-8004.2147.1at 2072.103 kb on + strand, within Xcc-8004.2147.1at 2072.103 kb on + strand, within Xcc-8004.2147.1at 2072.104 kb on - strand, within Xcc-8004.2147.1at 2072.104 kb on - strand, within Xcc-8004.2147.1at 2072.127 kb on + strand, within Xcc-8004.2147.1at 2072.127 kb on + strand, within Xcc-8004.2147.1at 2072.127 kb on + strand, within Xcc-8004.2147.1at 2072.127 kb on + strand, within Xcc-8004.2147.1at 2072.128 kb on - strand, within Xcc-8004.2147.1at 2072.128 kb on - strand, within Xcc-8004.2147.1at 2072.128 kb on - strand, within Xcc-8004.2147.1at 2072.128 kb on - strand, within Xcc-8004.2147.1at 2072.128 kb on - strand, within Xcc-8004.2147.1at 2072.128 kb on - strand, within Xcc-8004.2147.1at 2072.234 kb on + strand, within Xcc-8004.2147.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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2,067,818 - Xcc-8004.2145.1 0.37 +0.1
2,067,818 - Xcc-8004.2145.1 0.37 +2.0
2,067,818 - Xcc-8004.2145.1 0.37 +1.8
2,067,824 - Xcc-8004.2145.1 0.38 +1.8
2,067,848 - Xcc-8004.2145.1 0.39 +2.2
2,067,848 - Xcc-8004.2145.1 0.39 -0.9
2,067,959 - Xcc-8004.2145.1 0.46 -0.5
2,067,959 - Xcc-8004.2145.1 0.46 -0.1
2,067,961 + Xcc-8004.2145.1 0.46 +0.1
2,067,962 - Xcc-8004.2145.1 0.46 -0.1
2,067,970 + Xcc-8004.2145.1 0.47 +1.5
2,067,971 - Xcc-8004.2145.1 0.47 -1.9
2,067,971 - Xcc-8004.2145.1 0.47 -1.0
2,068,036 + Xcc-8004.2145.1 0.51 +0.1
2,068,037 - Xcc-8004.2145.1 0.51 -0.0
2,068,147 + Xcc-8004.2145.1 0.58 -1.3
2,068,147 + Xcc-8004.2145.1 0.58 -0.3
2,068,148 - Xcc-8004.2145.1 0.58 -0.5
2,068,156 + Xcc-8004.2145.1 0.58 -0.2
2,068,157 - Xcc-8004.2145.1 0.58 +1.2
2,068,157 - Xcc-8004.2145.1 0.58 +0.7
2,068,465 + Xcc-8004.2145.1 0.78 -0.3
2,068,465 + Xcc-8004.2145.1 0.78 +0.5
2,068,466 - Xcc-8004.2145.1 0.78 -2.0
2,068,621 + Xcc-8004.2145.1 0.87 -0.1
2,068,751 + +0.5
2,068,751 + +0.1
2,068,752 - +0.7
2,069,028 + -0.2
2,069,028 + -2.0
2,069,353 + Xcc-8004.2146.1 0.22 +2.6
2,069,353 + Xcc-8004.2146.1 0.22 +1.7
2,069,353 + Xcc-8004.2146.1 0.22 +0.8
2,069,354 - Xcc-8004.2146.1 0.22 -0.5
2,069,354 - Xcc-8004.2146.1 0.22 +1.3
2,069,354 - Xcc-8004.2146.1 0.22 +0.9
2,069,562 + Xcc-8004.2146.1 0.31 -0.5
2,069,563 - Xcc-8004.2146.1 0.31 -0.6
2,069,563 - Xcc-8004.2146.1 0.31 -1.0
2,069,647 - Xcc-8004.2146.1 0.34 +0.2
2,069,649 + Xcc-8004.2146.1 0.34 -0.3
2,069,649 + Xcc-8004.2146.1 0.34 +0.1
2,069,650 - Xcc-8004.2146.1 0.34 -0.9
2,069,703 + Xcc-8004.2146.1 0.37 +1.6
2,069,860 - Xcc-8004.2146.1 0.43 +1.6
2,069,961 + Xcc-8004.2146.1 0.47 +0.9
2,069,962 - Xcc-8004.2146.1 0.47 +0.4
2,070,072 + Xcc-8004.2146.1 0.52 -1.4
2,070,073 - Xcc-8004.2146.1 0.52 +0.6
2,070,073 - Xcc-8004.2146.1 0.52 -0.8
2,070,078 + Xcc-8004.2146.1 0.52 +0.8
2,070,078 + Xcc-8004.2146.1 0.52 -1.6
2,070,174 + Xcc-8004.2146.1 0.56 +0.4
2,070,174 + Xcc-8004.2146.1 0.56 -1.5
2,070,174 + Xcc-8004.2146.1 0.56 -1.2
2,070,174 + Xcc-8004.2146.1 0.56 -2.5
2,070,174 + Xcc-8004.2146.1 0.56 -0.5
2,070,175 - Xcc-8004.2146.1 0.56 +0.2
2,070,214 - Xcc-8004.2146.1 0.58 +0.7
2,070,214 - Xcc-8004.2146.1 0.58 -0.4
2,070,216 + Xcc-8004.2146.1 0.58 +0.6
2,070,391 + Xcc-8004.2146.1 0.65 +1.1
2,070,415 + Xcc-8004.2146.1 0.66 -0.1
2,070,415 + Xcc-8004.2146.1 0.66 -0.5
2,070,415 + Xcc-8004.2146.1 0.66 -0.2
2,070,416 - Xcc-8004.2146.1 0.66 +0.6
2,070,552 + Xcc-8004.2146.1 0.72 -0.3
2,070,552 + Xcc-8004.2146.1 0.72 +1.4
2,070,552 + Xcc-8004.2146.1 0.72 -2.2
2,070,553 - Xcc-8004.2146.1 0.72 -1.0
2,070,558 + Xcc-8004.2146.1 0.72 +0.1
2,070,708 - Xcc-8004.2146.1 0.78 -0.4
2,070,771 + Xcc-8004.2146.1 0.81 -1.0
2,070,772 - Xcc-8004.2146.1 0.81 +0.8
2,071,336 + +0.8
2,071,468 + -0.5
2,071,469 - +0.9
2,071,783 - Xcc-8004.2147.1 0.20 -2.1
2,071,833 + Xcc-8004.2147.1 0.23 -0.2
2,072,067 + Xcc-8004.2147.1 0.36 +0.1
2,072,096 + Xcc-8004.2147.1 0.37 +0.5
2,072,103 + Xcc-8004.2147.1 0.38 +1.7
2,072,103 + Xcc-8004.2147.1 0.38 -0.1
2,072,104 - Xcc-8004.2147.1 0.38 -0.8
2,072,104 - Xcc-8004.2147.1 0.38 -1.1
2,072,127 + Xcc-8004.2147.1 0.39 +0.7
2,072,127 + Xcc-8004.2147.1 0.39 -1.2
2,072,127 + Xcc-8004.2147.1 0.39 +4.9
2,072,127 + Xcc-8004.2147.1 0.39 -0.1
2,072,128 - Xcc-8004.2147.1 0.39 -0.5
2,072,128 - Xcc-8004.2147.1 0.39 +1.3
2,072,128 - Xcc-8004.2147.1 0.39 -1.3
2,072,128 - Xcc-8004.2147.1 0.39 -1.2
2,072,128 - Xcc-8004.2147.1 0.39 -0.1
2,072,128 - Xcc-8004.2147.1 0.39 +0.5
2,072,234 + Xcc-8004.2147.1 0.45 +0.3

Or see this region's nucleotide sequence