Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1745.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1743.1 and Xcc-8004.1744.1 overlap by 4 nucleotidesXcc-8004.1744.1 and Xcc-8004.1745.1 are separated by 1 nucleotidesXcc-8004.1745.1 and Xcc-8004.1746.1 overlap by 4 nucleotides Xcc-8004.1743.1: Xcc-8004.1743.1 - hypothetical protein, at 1,673,506 to 1,674,156 Xcc-8004.1743.1 Xcc-8004.1744.1: Xcc-8004.1744.1 - hypothetical protein, at 1,674,153 to 1,675,103 Xcc-8004.1744.1 Xcc-8004.1745.1: Xcc-8004.1745.1 - Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR @ 4-hydroxybenzoyl-CoA reductase, alpha subunit (EC 1.3.99.20), at 1,675,105 to 1,677,312 Xcc-8004.1745.1 Xcc-8004.1746.1: Xcc-8004.1746.1 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 1,677,309 to 1,678,316 Xcc-8004.1746.1 Position (kb) 1675 1676 1677 1678Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1674.107 kb on - strandat 1674.324 kb on - strand, within Xcc-8004.1744.1at 1674.370 kb on + strand, within Xcc-8004.1744.1at 1674.377 kb on + strand, within Xcc-8004.1744.1at 1674.513 kb on + strand, within Xcc-8004.1744.1at 1674.519 kb on + strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.732 kb on + strand, within Xcc-8004.1744.1at 1674.732 kb on + strand, within Xcc-8004.1744.1at 1674.733 kb on - strand, within Xcc-8004.1744.1at 1674.758 kb on + strand, within Xcc-8004.1744.1at 1674.834 kb on + strand, within Xcc-8004.1744.1at 1674.861 kb on + strand, within Xcc-8004.1744.1at 1675.213 kb on + strandat 1675.219 kb on + strandat 1675.220 kb on - strandat 1675.220 kb on - strandat 1675.220 kb on - strandat 1675.252 kb on + strandat 1675.252 kb on + strandat 1675.253 kb on - strandat 1675.253 kb on - strandat 1675.427 kb on - strand, within Xcc-8004.1745.1at 1675.427 kb on - strand, within Xcc-8004.1745.1at 1675.504 kb on + strand, within Xcc-8004.1745.1at 1675.505 kb on - strand, within Xcc-8004.1745.1at 1675.525 kb on + strand, within Xcc-8004.1745.1at 1675.525 kb on + strand, within Xcc-8004.1745.1at 1675.525 kb on + strand, within Xcc-8004.1745.1at 1675.525 kb on + strand, within Xcc-8004.1745.1at 1675.645 kb on + strand, within Xcc-8004.1745.1at 1675.645 kb on + strand, within Xcc-8004.1745.1at 1675.646 kb on - strand, within Xcc-8004.1745.1at 1675.646 kb on - strand, within Xcc-8004.1745.1at 1675.817 kb on - strand, within Xcc-8004.1745.1at 1675.818 kb on + strand, within Xcc-8004.1745.1at 1676.086 kb on + strand, within Xcc-8004.1745.1at 1676.086 kb on + strand, within Xcc-8004.1745.1at 1676.086 kb on + strand, within Xcc-8004.1745.1at 1676.086 kb on + strand, within Xcc-8004.1745.1at 1676.087 kb on - strand, within Xcc-8004.1745.1at 1676.087 kb on - strand, within Xcc-8004.1745.1at 1676.525 kb on - strand, within Xcc-8004.1745.1at 1676.525 kb on - strand, within Xcc-8004.1745.1at 1676.525 kb on - strand, within Xcc-8004.1745.1at 1676.665 kb on + strand, within Xcc-8004.1745.1at 1676.665 kb on + strand, within Xcc-8004.1745.1at 1676.665 kb on + strand, within Xcc-8004.1745.1at 1676.665 kb on + strand, within Xcc-8004.1745.1at 1676.666 kb on - strand, within Xcc-8004.1745.1at 1676.666 kb on - strand, within Xcc-8004.1745.1at 1677.226 kb on + strandat 1677.531 kb on + strand, within Xcc-8004.1746.1at 1677.531 kb on + strand, within Xcc-8004.1746.1at 1677.532 kb on - strand, within Xcc-8004.1746.1at 1677.786 kb on + strand, within Xcc-8004.1746.1at 1677.787 kb on - strand, within Xcc-8004.1746.1at 1677.795 kb on - strand, within Xcc-8004.1746.1at 1677.795 kb on - strand, within Xcc-8004.1746.1at 1677.795 kb on - strand, within Xcc-8004.1746.1at 1677.929 kb on - strand, within Xcc-8004.1746.1at 1678.044 kb on + strand, within Xcc-8004.1746.1at 1678.045 kb on - strand, within Xcc-8004.1746.1at 1678.045 kb on - strand, within Xcc-8004.1746.1at 1678.045 kb on - strand, within Xcc-8004.1746.1at 1678.045 kb on - strand, within Xcc-8004.1746.1at 1678.139 kb on + strand, within Xcc-8004.1746.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,674,107 - -1.1
1,674,324 - Xcc-8004.1744.1 0.18 +1.0
1,674,370 + Xcc-8004.1744.1 0.23 +1.1
1,674,377 + Xcc-8004.1744.1 0.24 +1.3
1,674,513 + Xcc-8004.1744.1 0.38 -1.8
1,674,519 + Xcc-8004.1744.1 0.38 -1.1
1,674,520 - Xcc-8004.1744.1 0.39 +1.3
1,674,520 - Xcc-8004.1744.1 0.39 -2.1
1,674,520 - Xcc-8004.1744.1 0.39 -0.4
1,674,520 - Xcc-8004.1744.1 0.39 +0.5
1,674,732 + Xcc-8004.1744.1 0.61 -0.4
1,674,732 + Xcc-8004.1744.1 0.61 +0.2
1,674,733 - Xcc-8004.1744.1 0.61 +0.8
1,674,758 + Xcc-8004.1744.1 0.64 +0.2
1,674,834 + Xcc-8004.1744.1 0.72 -0.0
1,674,861 + Xcc-8004.1744.1 0.74 -0.3
1,675,213 + +0.5
1,675,219 + -0.6
1,675,220 - +0.6
1,675,220 - -1.1
1,675,220 - -2.9
1,675,252 + +0.5
1,675,252 + +0.2
1,675,253 - -0.4
1,675,253 - -1.5
1,675,427 - Xcc-8004.1745.1 0.15 -0.5
1,675,427 - Xcc-8004.1745.1 0.15 -0.6
1,675,504 + Xcc-8004.1745.1 0.18 -0.1
1,675,505 - Xcc-8004.1745.1 0.18 -1.5
1,675,525 + Xcc-8004.1745.1 0.19 -1.7
1,675,525 + Xcc-8004.1745.1 0.19 -0.4
1,675,525 + Xcc-8004.1745.1 0.19 -0.9
1,675,525 + Xcc-8004.1745.1 0.19 -0.0
1,675,645 + Xcc-8004.1745.1 0.24 +0.5
1,675,645 + Xcc-8004.1745.1 0.24 -0.3
1,675,646 - Xcc-8004.1745.1 0.25 +0.9
1,675,646 - Xcc-8004.1745.1 0.25 -1.0
1,675,817 - Xcc-8004.1745.1 0.32 -0.2
1,675,818 + Xcc-8004.1745.1 0.32 -0.4
1,676,086 + Xcc-8004.1745.1 0.44 +0.3
1,676,086 + Xcc-8004.1745.1 0.44 -0.0
1,676,086 + Xcc-8004.1745.1 0.44 +0.3
1,676,086 + Xcc-8004.1745.1 0.44 -0.1
1,676,087 - Xcc-8004.1745.1 0.44 -0.9
1,676,087 - Xcc-8004.1745.1 0.44 +0.4
1,676,525 - Xcc-8004.1745.1 0.64 +0.7
1,676,525 - Xcc-8004.1745.1 0.64 -0.7
1,676,525 - Xcc-8004.1745.1 0.64 +1.1
1,676,665 + Xcc-8004.1745.1 0.71 -0.1
1,676,665 + Xcc-8004.1745.1 0.71 +0.0
1,676,665 + Xcc-8004.1745.1 0.71 -1.2
1,676,665 + Xcc-8004.1745.1 0.71 -0.1
1,676,666 - Xcc-8004.1745.1 0.71 -0.5
1,676,666 - Xcc-8004.1745.1 0.71 +2.2
1,677,226 + -0.3
1,677,531 + Xcc-8004.1746.1 0.22 +0.1
1,677,531 + Xcc-8004.1746.1 0.22 +0.2
1,677,532 - Xcc-8004.1746.1 0.22 -0.5
1,677,786 + Xcc-8004.1746.1 0.47 -0.1
1,677,787 - Xcc-8004.1746.1 0.47 -1.6
1,677,795 - Xcc-8004.1746.1 0.48 -0.1
1,677,795 - Xcc-8004.1746.1 0.48 -0.9
1,677,795 - Xcc-8004.1746.1 0.48 +0.1
1,677,929 - Xcc-8004.1746.1 0.62 -1.2
1,678,044 + Xcc-8004.1746.1 0.73 -0.0
1,678,045 - Xcc-8004.1746.1 0.73 -1.9
1,678,045 - Xcc-8004.1746.1 0.73 +0.9
1,678,045 - Xcc-8004.1746.1 0.73 -1.4
1,678,045 - Xcc-8004.1746.1 0.73 -0.0
1,678,139 + Xcc-8004.1746.1 0.82 +0.5

Or see this region's nucleotide sequence