Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1332.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1331.1 and Xcc-8004.1332.1 are separated by 264 nucleotidesXcc-8004.1332.1 and Xcc-8004.1334.1 are separated by 455 nucleotidesXcc-8004.1334.1 and Xcc-8004.1335.1 overlap by 13 nucleotides Xcc-8004.1331.1: Xcc-8004.1331.1 - Glycogen debranching enzyme (EC 3.2.1.-), at 1,261,365 to 1,263,692 Xcc-8004.1331.1 Xcc-8004.1332.1: Xcc-8004.1332.1 - Ribosomal protein S6 glutaminyl transferase, at 1,263,957 to 1,264,862 Xcc-8004.1332.1 Xcc-8004.1334.1: Xcc-8004.1334.1 - hypothetical protein, at 1,265,318 to 1,265,524 Xcc-8004.1334.1 Xcc-8004.1335.1: Xcc-8004.1335.1 - Two-component system regulatory protein, at 1,265,512 to 1,266,189 Xcc-8004.1335.1 Position (kb) 1263 1264 1265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1262.959 kb on + strand, within Xcc-8004.1331.1at 1262.960 kb on - strand, within Xcc-8004.1331.1at 1262.967 kb on + strand, within Xcc-8004.1331.1at 1262.967 kb on + strand, within Xcc-8004.1331.1at 1262.968 kb on - strand, within Xcc-8004.1331.1at 1262.968 kb on - strand, within Xcc-8004.1331.1at 1262.981 kb on - strand, within Xcc-8004.1331.1at 1262.981 kb on - strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.124 kb on + strand, within Xcc-8004.1331.1at 1263.124 kb on + strand, within Xcc-8004.1331.1at 1263.125 kb on - strand, within Xcc-8004.1331.1at 1263.125 kb on - strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.175 kb on + strand, within Xcc-8004.1331.1at 1263.229 kb on + strand, within Xcc-8004.1331.1at 1263.229 kb on + strand, within Xcc-8004.1331.1at 1263.230 kb on - strand, within Xcc-8004.1331.1at 1263.230 kb on - strand, within Xcc-8004.1331.1at 1263.271 kb on - strand, within Xcc-8004.1331.1at 1263.283 kb on + strand, within Xcc-8004.1331.1at 1263.283 kb on + strand, within Xcc-8004.1331.1at 1263.284 kb on - strand, within Xcc-8004.1331.1at 1263.284 kb on - strand, within Xcc-8004.1331.1at 1263.307 kb on + strand, within Xcc-8004.1331.1at 1263.308 kb on - strand, within Xcc-8004.1331.1at 1263.308 kb on - strand, within Xcc-8004.1331.1at 1263.469 kb on + strandat 1263.767 kb on - strandat 1263.767 kb on - strandat 1264.023 kb on + strandat 1264.024 kb on - strandat 1264.098 kb on + strand, within Xcc-8004.1332.1at 1264.099 kb on - strand, within Xcc-8004.1332.1at 1264.099 kb on - strand, within Xcc-8004.1332.1at 1264.099 kb on - strand, within Xcc-8004.1332.1at 1264.134 kb on + strand, within Xcc-8004.1332.1at 1264.134 kb on + strand, within Xcc-8004.1332.1at 1264.134 kb on + strand, within Xcc-8004.1332.1at 1264.135 kb on - strand, within Xcc-8004.1332.1at 1264.206 kb on - strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.244 kb on + strand, within Xcc-8004.1332.1at 1264.245 kb on - strand, within Xcc-8004.1332.1at 1264.320 kb on - strand, within Xcc-8004.1332.1at 1264.326 kb on - strand, within Xcc-8004.1332.1at 1264.882 kb on - strandat 1264.903 kb on + strandat 1264.934 kb on + strandat 1264.934 kb on + strandat 1264.935 kb on - strandat 1265.041 kb on - strandat 1265.041 kb on - strandat 1265.223 kb on + strandat 1265.223 kb on + strandat 1265.223 kb on + strandat 1265.224 kb on - strandat 1265.224 kb on - strandat 1265.224 kb on - strandat 1265.325 kb on - strandat 1265.447 kb on - strand, within Xcc-8004.1334.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,262,959 + Xcc-8004.1331.1 0.68 -0.3
1,262,960 - Xcc-8004.1331.1 0.69 -0.0
1,262,967 + Xcc-8004.1331.1 0.69 +1.2
1,262,967 + Xcc-8004.1331.1 0.69 +1.0
1,262,968 - Xcc-8004.1331.1 0.69 +0.0
1,262,968 - Xcc-8004.1331.1 0.69 +2.4
1,262,981 - Xcc-8004.1331.1 0.69 -1.2
1,262,981 - Xcc-8004.1331.1 0.69 -1.0
1,263,034 + Xcc-8004.1331.1 0.72 -1.3
1,263,034 + Xcc-8004.1331.1 0.72 +0.8
1,263,034 + Xcc-8004.1331.1 0.72 +0.1
1,263,034 + Xcc-8004.1331.1 0.72 -0.6
1,263,034 + Xcc-8004.1331.1 0.72 +0.3
1,263,034 + Xcc-8004.1331.1 0.72 -0.5
1,263,034 + Xcc-8004.1331.1 0.72 +1.9
1,263,034 + Xcc-8004.1331.1 0.72 +0.9
1,263,035 - Xcc-8004.1331.1 0.72 -1.3
1,263,035 - Xcc-8004.1331.1 0.72 +0.6
1,263,035 - Xcc-8004.1331.1 0.72 -1.2
1,263,035 - Xcc-8004.1331.1 0.72 -0.3
1,263,035 - Xcc-8004.1331.1 0.72 +0.1
1,263,124 + Xcc-8004.1331.1 0.76 -1.1
1,263,124 + Xcc-8004.1331.1 0.76 -0.2
1,263,125 - Xcc-8004.1331.1 0.76 +1.0
1,263,125 - Xcc-8004.1331.1 0.76 -1.6
1,263,130 + Xcc-8004.1331.1 0.76 -0.2
1,263,130 + Xcc-8004.1331.1 0.76 +0.0
1,263,130 + Xcc-8004.1331.1 0.76 -0.0
1,263,130 + Xcc-8004.1331.1 0.76 +1.8
1,263,131 - Xcc-8004.1331.1 0.76 +0.5
1,263,131 - Xcc-8004.1331.1 0.76 -1.3
1,263,131 - Xcc-8004.1331.1 0.76 +0.5
1,263,131 - Xcc-8004.1331.1 0.76 +0.2
1,263,175 + Xcc-8004.1331.1 0.78 -0.2
1,263,229 + Xcc-8004.1331.1 0.80 +1.2
1,263,229 + Xcc-8004.1331.1 0.80 -1.5
1,263,230 - Xcc-8004.1331.1 0.80 -0.8
1,263,230 - Xcc-8004.1331.1 0.80 +0.9
1,263,271 - Xcc-8004.1331.1 0.82 -1.5
1,263,283 + Xcc-8004.1331.1 0.82 +0.3
1,263,283 + Xcc-8004.1331.1 0.82 +0.8
1,263,284 - Xcc-8004.1331.1 0.82 -0.8
1,263,284 - Xcc-8004.1331.1 0.82 -2.5
1,263,307 + Xcc-8004.1331.1 0.83 -1.5
1,263,308 - Xcc-8004.1331.1 0.83 +0.4
1,263,308 - Xcc-8004.1331.1 0.83 -0.0
1,263,469 + +0.1
1,263,767 - +1.4
1,263,767 - -1.5
1,264,023 + +0.9
1,264,024 - +0.1
1,264,098 + Xcc-8004.1332.1 0.16 -0.2
1,264,099 - Xcc-8004.1332.1 0.16 +1.0
1,264,099 - Xcc-8004.1332.1 0.16 -1.9
1,264,099 - Xcc-8004.1332.1 0.16 +0.6
1,264,134 + Xcc-8004.1332.1 0.20 -0.8
1,264,134 + Xcc-8004.1332.1 0.20 -1.4
1,264,134 + Xcc-8004.1332.1 0.20 -0.8
1,264,135 - Xcc-8004.1332.1 0.20 +0.2
1,264,206 - Xcc-8004.1332.1 0.27 +1.0
1,264,242 + Xcc-8004.1332.1 0.31 -0.3
1,264,242 + Xcc-8004.1332.1 0.31 +1.4
1,264,242 + Xcc-8004.1332.1 0.31 -0.9
1,264,242 + Xcc-8004.1332.1 0.31 +2.5
1,264,242 + Xcc-8004.1332.1 0.31 -0.2
1,264,242 + Xcc-8004.1332.1 0.31 +0.1
1,264,242 + Xcc-8004.1332.1 0.31 +3.0
1,264,242 + Xcc-8004.1332.1 0.31 +1.0
1,264,243 - Xcc-8004.1332.1 0.32 +0.9
1,264,243 - Xcc-8004.1332.1 0.32 -1.5
1,264,243 - Xcc-8004.1332.1 0.32 -2.1
1,264,243 - Xcc-8004.1332.1 0.32 +0.3
1,264,243 - Xcc-8004.1332.1 0.32 +2.0
1,264,243 - Xcc-8004.1332.1 0.32 +2.1
1,264,243 - Xcc-8004.1332.1 0.32 +0.4
1,264,244 + Xcc-8004.1332.1 0.32 -0.3
1,264,245 - Xcc-8004.1332.1 0.32 -0.1
1,264,320 - Xcc-8004.1332.1 0.40 +1.5
1,264,326 - Xcc-8004.1332.1 0.41 +1.0
1,264,882 - +0.9
1,264,903 + +0.7
1,264,934 + -0.5
1,264,934 + -0.2
1,264,935 - +0.3
1,265,041 - +2.9
1,265,041 - -0.7
1,265,223 + -2.4
1,265,223 + +0.2
1,265,223 + +2.6
1,265,224 - +0.9
1,265,224 - -0.1
1,265,224 - -1.0
1,265,325 - -0.8
1,265,447 - Xcc-8004.1334.1 0.62 +0.1

Or see this region's nucleotide sequence