Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1170.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1169.1 and Xcc-8004.1170.1 are separated by 3 nucleotidesXcc-8004.1170.1 and Xcc-8004.1171.1 are separated by 322 nucleotides Xcc-8004.1169.1: Xcc-8004.1169.1 - ErfK/YbiS/YcfS/YnhG family protein, at 1,104,012 to 1,104,986 Xcc-8004.1169.1 Xcc-8004.1170.1: Xcc-8004.1170.1 - Membrane proteins related to metalloendopeptidases, at 1,104,990 to 1,105,721 Xcc-8004.1170.1 Xcc-8004.1171.1: Xcc-8004.1171.1 - Reductase, at 1,106,044 to 1,106,874 Xcc-8004.1171.1 Position (kb) 1104 1105 1106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1104.345 kb on + strand, within Xcc-8004.1169.1at 1104.432 kb on + strand, within Xcc-8004.1169.1at 1104.433 kb on - strand, within Xcc-8004.1169.1at 1104.433 kb on - strand, within Xcc-8004.1169.1at 1104.433 kb on - strand, within Xcc-8004.1169.1at 1104.433 kb on - strand, within Xcc-8004.1169.1at 1104.643 kb on - strand, within Xcc-8004.1169.1at 1104.738 kb on + strand, within Xcc-8004.1169.1at 1104.738 kb on + strand, within Xcc-8004.1169.1at 1104.738 kb on + strand, within Xcc-8004.1169.1at 1104.850 kb on - strand, within Xcc-8004.1169.1at 1104.949 kb on + strandat 1104.950 kb on - strandat 1104.950 kb on - strandat 1105.470 kb on + strand, within Xcc-8004.1170.1at 1105.494 kb on + strand, within Xcc-8004.1170.1at 1105.494 kb on + strand, within Xcc-8004.1170.1at 1105.494 kb on + strand, within Xcc-8004.1170.1at 1105.495 kb on - strand, within Xcc-8004.1170.1at 1105.495 kb on - strand, within Xcc-8004.1170.1at 1105.501 kb on - strand, within Xcc-8004.1170.1at 1105.501 kb on - strand, within Xcc-8004.1170.1at 1105.503 kb on + strand, within Xcc-8004.1170.1at 1105.503 kb on + strand, within Xcc-8004.1170.1at 1105.503 kb on + strand, within Xcc-8004.1170.1at 1105.503 kb on + strand, within Xcc-8004.1170.1at 1105.504 kb on - strand, within Xcc-8004.1170.1at 1105.504 kb on - strand, within Xcc-8004.1170.1at 1105.504 kb on - strand, within Xcc-8004.1170.1at 1105.506 kb on + strand, within Xcc-8004.1170.1at 1105.507 kb on - strand, within Xcc-8004.1170.1at 1105.883 kb on + strandat 1105.968 kb on - strandat 1106.111 kb on - strandat 1106.265 kb on + strand, within Xcc-8004.1171.1at 1106.265 kb on + strand, within Xcc-8004.1171.1at 1106.295 kb on - strand, within Xcc-8004.1171.1at 1106.334 kb on - strand, within Xcc-8004.1171.1at 1106.436 kb on - strand, within Xcc-8004.1171.1at 1106.436 kb on - strand, within Xcc-8004.1171.1at 1106.699 kb on + strand, within Xcc-8004.1171.1at 1106.699 kb on + strand, within Xcc-8004.1171.1at 1106.700 kb on - strand, within Xcc-8004.1171.1at 1106.700 kb on - strand, within Xcc-8004.1171.1at 1106.700 kb on - strand, within Xcc-8004.1171.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,104,345 + Xcc-8004.1169.1 0.34 -0.3
1,104,432 + Xcc-8004.1169.1 0.43 -2.4
1,104,433 - Xcc-8004.1169.1 0.43 -0.0
1,104,433 - Xcc-8004.1169.1 0.43 -0.5
1,104,433 - Xcc-8004.1169.1 0.43 +0.0
1,104,433 - Xcc-8004.1169.1 0.43 -0.3
1,104,643 - Xcc-8004.1169.1 0.65 -1.7
1,104,738 + Xcc-8004.1169.1 0.74 +0.3
1,104,738 + Xcc-8004.1169.1 0.74 +0.0
1,104,738 + Xcc-8004.1169.1 0.74 +0.4
1,104,850 - Xcc-8004.1169.1 0.86 -0.1
1,104,949 + -1.3
1,104,950 - -0.8
1,104,950 - -0.3
1,105,470 + Xcc-8004.1170.1 0.66 -0.6
1,105,494 + Xcc-8004.1170.1 0.69 -0.5
1,105,494 + Xcc-8004.1170.1 0.69 +1.6
1,105,494 + Xcc-8004.1170.1 0.69 -2.3
1,105,495 - Xcc-8004.1170.1 0.69 -3.2
1,105,495 - Xcc-8004.1170.1 0.69 +0.5
1,105,501 - Xcc-8004.1170.1 0.70 -0.1
1,105,501 - Xcc-8004.1170.1 0.70 -1.5
1,105,503 + Xcc-8004.1170.1 0.70 -1.1
1,105,503 + Xcc-8004.1170.1 0.70 +0.5
1,105,503 + Xcc-8004.1170.1 0.70 -1.1
1,105,503 + Xcc-8004.1170.1 0.70 -0.4
1,105,504 - Xcc-8004.1170.1 0.70 -0.1
1,105,504 - Xcc-8004.1170.1 0.70 -0.8
1,105,504 - Xcc-8004.1170.1 0.70 +0.3
1,105,506 + Xcc-8004.1170.1 0.70 -0.7
1,105,507 - Xcc-8004.1170.1 0.71 -0.8
1,105,883 + +1.1
1,105,968 - +2.0
1,106,111 - -1.4
1,106,265 + Xcc-8004.1171.1 0.27 +0.3
1,106,265 + Xcc-8004.1171.1 0.27 +1.5
1,106,295 - Xcc-8004.1171.1 0.30 -0.9
1,106,334 - Xcc-8004.1171.1 0.35 +0.6
1,106,436 - Xcc-8004.1171.1 0.47 +1.3
1,106,436 - Xcc-8004.1171.1 0.47 +0.3
1,106,699 + Xcc-8004.1171.1 0.79 +0.6
1,106,699 + Xcc-8004.1171.1 0.79 -1.0
1,106,700 - Xcc-8004.1171.1 0.79 +1.7
1,106,700 - Xcc-8004.1171.1 0.79 -0.5
1,106,700 - Xcc-8004.1171.1 0.79 -0.6

Or see this region's nucleotide sequence