Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1166.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1165.1 and Xcc-8004.1166.1 are separated by 133 nucleotidesXcc-8004.1166.1 and Xcc-8004.1167.1 are separated by 67 nucleotides Xcc-8004.1165.1: Xcc-8004.1165.1 - Acetyl-CoA hydrolase, at 1,097,601 to 1,099,550 Xcc-8004.1165.1 Xcc-8004.1166.1: Xcc-8004.1166.1 - FIG01210744: hypothetical protein, at 1,099,684 to 1,100,862 Xcc-8004.1166.1 Xcc-8004.1167.1: Xcc-8004.1167.1 - hypothetical protein, at 1,100,930 to 1,103,710 Xcc-8004.1167.1 Position (kb) 1099 1100 1101Strain fitness (log2 ratio) -2 -1 0 1 2at 1098.690 kb on + strand, within Xcc-8004.1165.1at 1098.690 kb on + strand, within Xcc-8004.1165.1at 1098.691 kb on - strand, within Xcc-8004.1165.1at 1098.691 kb on - strand, within Xcc-8004.1165.1at 1098.930 kb on + strand, within Xcc-8004.1165.1at 1099.402 kb on + strandat 1099.403 kb on - strandat 1099.522 kb on - strandat 1099.522 kb on - strandat 1099.849 kb on + strand, within Xcc-8004.1166.1at 1099.850 kb on - strand, within Xcc-8004.1166.1at 1100.368 kb on + strand, within Xcc-8004.1166.1at 1100.369 kb on - strand, within Xcc-8004.1166.1at 1100.369 kb on - strand, within Xcc-8004.1166.1at 1100.369 kb on - strand, within Xcc-8004.1166.1at 1100.383 kb on - strand, within Xcc-8004.1166.1at 1100.504 kb on - strand, within Xcc-8004.1166.1at 1100.504 kb on - strand, within Xcc-8004.1166.1at 1100.504 kb on - strand, within Xcc-8004.1166.1at 1100.884 kb on + strandat 1100.884 kb on + strandat 1101.078 kb on + strandat 1101.078 kb on + strandat 1101.306 kb on - strand, within Xcc-8004.1167.1at 1101.344 kb on + strand, within Xcc-8004.1167.1at 1101.537 kb on - strand, within Xcc-8004.1167.1at 1101.674 kb on + strand, within Xcc-8004.1167.1at 1101.677 kb on + strand, within Xcc-8004.1167.1at 1101.813 kb on - strand, within Xcc-8004.1167.1at 1101.813 kb on - strand, within Xcc-8004.1167.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,098,690 + Xcc-8004.1165.1 0.56 -0.0
1,098,690 + Xcc-8004.1165.1 0.56 -2.5
1,098,691 - Xcc-8004.1165.1 0.56 +0.6
1,098,691 - Xcc-8004.1165.1 0.56 -1.0
1,098,930 + Xcc-8004.1165.1 0.68 +2.4
1,099,402 + -0.6
1,099,403 - -1.5
1,099,522 - -0.5
1,099,522 - +0.0
1,099,849 + Xcc-8004.1166.1 0.14 -1.7
1,099,850 - Xcc-8004.1166.1 0.14 -1.0
1,100,368 + Xcc-8004.1166.1 0.58 -0.6
1,100,369 - Xcc-8004.1166.1 0.58 -0.9
1,100,369 - Xcc-8004.1166.1 0.58 -1.1
1,100,369 - Xcc-8004.1166.1 0.58 -0.6
1,100,383 - Xcc-8004.1166.1 0.59 -1.1
1,100,504 - Xcc-8004.1166.1 0.70 +0.1
1,100,504 - Xcc-8004.1166.1 0.70 -0.9
1,100,504 - Xcc-8004.1166.1 0.70 +0.2
1,100,884 + +2.5
1,100,884 + +0.1
1,101,078 + +0.2
1,101,078 + +0.0
1,101,306 - Xcc-8004.1167.1 0.14 -0.0
1,101,344 + Xcc-8004.1167.1 0.15 +0.2
1,101,537 - Xcc-8004.1167.1 0.22 +0.2
1,101,674 + Xcc-8004.1167.1 0.27 +0.7
1,101,677 + Xcc-8004.1167.1 0.27 +0.3
1,101,813 - Xcc-8004.1167.1 0.32 -0.3
1,101,813 - Xcc-8004.1167.1 0.32 +0.2

Or see this region's nucleotide sequence