Strain Fitness in Pantoea sp. MT58 around IAI47_20440

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20435 and IAI47_20440 are separated by 225 nucleotidesIAI47_20440 and IAI47_20445 are separated by 86 nucleotides IAI47_20435: IAI47_20435 - fumarate hydratase, at 330,577 to 332,223 _20435 IAI47_20440: IAI47_20440 - SDR family oxidoreductase, at 332,449 to 333,105 _20440 IAI47_20445: IAI47_20445 - SDR family oxidoreductase, at 333,192 to 334,259 _20445 Position (kb) 332 333 334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.454 kb on - strand, within IAI47_20435at 331.545 kb on + strand, within IAI47_20435at 331.545 kb on + strand, within IAI47_20435at 331.546 kb on - strand, within IAI47_20435at 331.546 kb on - strand, within IAI47_20435at 331.572 kb on + strand, within IAI47_20435at 331.572 kb on + strand, within IAI47_20435at 331.573 kb on - strand, within IAI47_20435at 331.573 kb on - strand, within IAI47_20435at 331.716 kb on + strand, within IAI47_20435at 331.758 kb on + strand, within IAI47_20435at 331.813 kb on + strand, within IAI47_20435at 331.814 kb on - strand, within IAI47_20435at 331.834 kb on + strand, within IAI47_20435at 331.834 kb on + strand, within IAI47_20435at 331.834 kb on + strand, within IAI47_20435at 331.835 kb on - strand, within IAI47_20435at 331.835 kb on - strand, within IAI47_20435at 331.835 kb on - strand, within IAI47_20435at 331.835 kb on - strand, within IAI47_20435at 331.837 kb on + strand, within IAI47_20435at 331.838 kb on - strand, within IAI47_20435at 331.915 kb on + strand, within IAI47_20435at 331.915 kb on + strand, within IAI47_20435at 331.915 kb on + strand, within IAI47_20435at 331.915 kb on + strand, within IAI47_20435at 331.916 kb on - strand, within IAI47_20435at 331.977 kb on + strand, within IAI47_20435at 331.978 kb on - strand, within IAI47_20435at 331.978 kb on - strand, within IAI47_20435at 331.978 kb on - strand, within IAI47_20435at 332.001 kb on + strand, within IAI47_20435at 332.018 kb on - strand, within IAI47_20435at 332.089 kb on + strandat 332.148 kb on + strandat 332.165 kb on + strandat 332.169 kb on + strandat 332.221 kb on + strandat 332.221 kb on + strandat 332.221 kb on + strandat 332.222 kb on - strandat 332.222 kb on - strandat 332.224 kb on + strandat 332.224 kb on + strandat 332.224 kb on + strandat 332.224 kb on + strandat 332.224 kb on + strandat 332.224 kb on + strandat 332.224 kb on + strandat 332.225 kb on - strandat 332.225 kb on - strandat 332.225 kb on - strandat 332.238 kb on - strandat 332.275 kb on - strandat 332.280 kb on + strandat 332.280 kb on + strandat 332.287 kb on + strandat 332.344 kb on - strandat 332.344 kb on - strandat 332.344 kb on - strandat 332.442 kb on + strandat 332.443 kb on - strandat 332.451 kb on - strandat 332.451 kb on - strandat 332.512 kb on + strandat 332.512 kb on + strandat 332.512 kb on + strandat 332.512 kb on + strandat 332.513 kb on - strandat 332.513 kb on - strandat 332.513 kb on - strandat 332.519 kb on + strand, within IAI47_20440at 332.523 kb on + strand, within IAI47_20440at 332.524 kb on - strand, within IAI47_20440at 332.717 kb on + strand, within IAI47_20440at 332.717 kb on + strand, within IAI47_20440at 332.718 kb on - strand, within IAI47_20440at 332.718 kb on - strand, within IAI47_20440at 332.718 kb on - strand, within IAI47_20440at 332.745 kb on + strand, within IAI47_20440at 332.746 kb on - strand, within IAI47_20440at 332.844 kb on + strand, within IAI47_20440at 332.844 kb on + strand, within IAI47_20440at 332.844 kb on + strand, within IAI47_20440at 332.844 kb on + strand, within IAI47_20440at 332.845 kb on - strand, within IAI47_20440at 332.845 kb on - strand, within IAI47_20440at 332.845 kb on - strand, within IAI47_20440at 332.914 kb on + strand, within IAI47_20440at 332.950 kb on - strand, within IAI47_20440at 333.142 kb on + strandat 333.142 kb on + strandat 333.142 kb on + strandat 333.142 kb on + strandat 333.143 kb on - strandat 333.144 kb on + strandat 333.144 kb on + strandat 333.144 kb on + strandat 333.144 kb on + strandat 333.144 kb on + strandat 333.144 kb on + strandat 333.145 kb on - strandat 333.145 kb on - strandat 333.145 kb on - strandat 333.145 kb on - strandat 333.145 kb on - strandat 333.145 kb on - strandat 333.145 kb on - strandat 333.239 kb on + strandat 333.240 kb on - strandat 333.240 kb on - strandat 333.290 kb on + strandat 333.290 kb on + strandat 333.290 kb on + strandat 333.290 kb on + strandat 333.290 kb on + strandat 333.290 kb on + strandat 333.290 kb on + strandat 333.291 kb on - strandat 333.296 kb on + strandat 333.296 kb on + strandat 333.296 kb on + strandat 333.296 kb on + strandat 333.297 kb on - strandat 333.302 kb on + strand, within IAI47_20445at 333.303 kb on - strand, within IAI47_20445at 333.303 kb on - strand, within IAI47_20445at 333.303 kb on - strand, within IAI47_20445at 333.359 kb on + strand, within IAI47_20445at 333.359 kb on + strand, within IAI47_20445at 333.359 kb on + strand, within IAI47_20445at 333.360 kb on - strand, within IAI47_20445at 333.428 kb on + strand, within IAI47_20445at 333.461 kb on - strand, within IAI47_20445at 333.461 kb on - strand, within IAI47_20445at 333.461 kb on - strand, within IAI47_20445at 333.484 kb on + strand, within IAI47_20445at 333.484 kb on + strand, within IAI47_20445at 333.484 kb on + strand, within IAI47_20445at 333.485 kb on - strand, within IAI47_20445at 333.535 kb on - strand, within IAI47_20445at 333.618 kb on - strand, within IAI47_20445at 333.618 kb on - strand, within IAI47_20445at 333.618 kb on - strand, within IAI47_20445at 333.659 kb on + strand, within IAI47_20445at 333.659 kb on + strand, within IAI47_20445at 333.660 kb on - strand, within IAI47_20445at 333.660 kb on - strand, within IAI47_20445at 333.717 kb on - strand, within IAI47_20445at 333.717 kb on - strand, within IAI47_20445at 333.729 kb on - strand, within IAI47_20445at 333.732 kb on + strand, within IAI47_20445at 333.733 kb on - strand, within IAI47_20445at 333.752 kb on + strand, within IAI47_20445at 333.753 kb on - strand, within IAI47_20445at 333.753 kb on - strand, within IAI47_20445at 333.778 kb on + strand, within IAI47_20445at 333.779 kb on - strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.827 kb on - strand, within IAI47_20445at 333.827 kb on - strand, within IAI47_20445at 333.827 kb on - strand, within IAI47_20445at 333.834 kb on - strand, within IAI47_20445at 333.896 kb on - strand, within IAI47_20445at 333.916 kb on + strand, within IAI47_20445at 333.916 kb on + strand, within IAI47_20445at 333.916 kb on + strand, within IAI47_20445at 333.917 kb on - strand, within IAI47_20445at 333.917 kb on - strand, within IAI47_20445at 333.917 kb on - strand, within IAI47_20445at 334.071 kb on + strand, within IAI47_20445at 334.071 kb on + strand, within IAI47_20445at 334.071 kb on + strand, within IAI47_20445at 334.072 kb on - strand, within IAI47_20445

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50
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331,454 - IAI47_20435 0.53 +0.9
331,545 + IAI47_20435 0.59 -0.0
331,545 + IAI47_20435 0.59 +1.8
331,546 - IAI47_20435 0.59 -0.6
331,546 - IAI47_20435 0.59 +0.6
331,572 + IAI47_20435 0.60 +0.7
331,572 + IAI47_20435 0.60 -0.6
331,573 - IAI47_20435 0.60 +0.8
331,573 - IAI47_20435 0.60 -0.4
331,716 + IAI47_20435 0.69 +0.3
331,758 + IAI47_20435 0.72 -2.3
331,813 + IAI47_20435 0.75 +0.9
331,814 - IAI47_20435 0.75 +0.9
331,834 + IAI47_20435 0.76 +0.5
331,834 + IAI47_20435 0.76 +0.9
331,834 + IAI47_20435 0.76 +0.1
331,835 - IAI47_20435 0.76 -0.6
331,835 - IAI47_20435 0.76 -0.2
331,835 - IAI47_20435 0.76 -0.4
331,835 - IAI47_20435 0.76 +0.8
331,837 + IAI47_20435 0.77 -1.0
331,838 - IAI47_20435 0.77 -1.0
331,915 + IAI47_20435 0.81 +0.4
331,915 + IAI47_20435 0.81 +0.4
331,915 + IAI47_20435 0.81 +0.7
331,915 + IAI47_20435 0.81 +0.9
331,916 - IAI47_20435 0.81 -1.1
331,977 + IAI47_20435 0.85 -0.9
331,978 - IAI47_20435 0.85 -2.0
331,978 - IAI47_20435 0.85 +0.2
331,978 - IAI47_20435 0.85 -1.7
332,001 + IAI47_20435 0.86 +1.0
332,018 - IAI47_20435 0.87 -2.3
332,089 + -0.1
332,148 + +1.1
332,165 + -0.2
332,169 + -0.5
332,221 + +1.2
332,221 + -0.7
332,221 + -1.8
332,222 - +0.9
332,222 - -0.5
332,224 + +0.6
332,224 + -0.1
332,224 + +0.6
332,224 + -2.0
332,224 + -0.0
332,224 + +1.3
332,224 + +1.4
332,225 - +0.5
332,225 - +0.2
332,225 - +0.2
332,238 - -0.1
332,275 - -0.3
332,280 + +0.3
332,280 + +0.9
332,287 + +0.2
332,344 - +0.8
332,344 - +0.9
332,344 - +0.2
332,442 + -0.8
332,443 - +0.0
332,451 - -0.5
332,451 - +0.3
332,512 + -1.4
332,512 + +1.0
332,512 + -0.3
332,512 + -0.6
332,513 - -1.5
332,513 - +0.0
332,513 - +0.2
332,519 + IAI47_20440 0.11 +0.1
332,523 + IAI47_20440 0.11 -0.3
332,524 - IAI47_20440 0.11 -1.4
332,717 + IAI47_20440 0.41 -1.4
332,717 + IAI47_20440 0.41 +0.7
332,718 - IAI47_20440 0.41 -0.1
332,718 - IAI47_20440 0.41 -0.0
332,718 - IAI47_20440 0.41 -0.4
332,745 + IAI47_20440 0.45 -1.3
332,746 - IAI47_20440 0.45 -2.0
332,844 + IAI47_20440 0.60 -1.0
332,844 + IAI47_20440 0.60 +0.5
332,844 + IAI47_20440 0.60 -0.8
332,844 + IAI47_20440 0.60 +1.2
332,845 - IAI47_20440 0.60 +0.3
332,845 - IAI47_20440 0.60 +0.5
332,845 - IAI47_20440 0.60 +0.4
332,914 + IAI47_20440 0.71 -1.0
332,950 - IAI47_20440 0.76 +0.4
333,142 + +0.6
333,142 + -0.5
333,142 + +0.6
333,142 + +0.1
333,143 - +0.3
333,144 + -0.1
333,144 + -0.0
333,144 + -1.9
333,144 + -0.2
333,144 + +0.9
333,144 + -0.5
333,145 - -1.3
333,145 - -0.4
333,145 - +0.5
333,145 - +0.1
333,145 - -1.1
333,145 - +0.2
333,145 - -1.0
333,239 + +0.5
333,240 - -0.4
333,240 - +0.1
333,290 + -0.0
333,290 + -0.3
333,290 + +1.4
333,290 + +0.5
333,290 + +0.5
333,290 + +0.1
333,290 + -1.3
333,291 - -0.0
333,296 + +1.3
333,296 + -1.4
333,296 + -0.3
333,296 + +0.6
333,297 - +1.3
333,302 + IAI47_20445 0.10 +0.0
333,303 - IAI47_20445 0.10 +1.4
333,303 - IAI47_20445 0.10 -0.4
333,303 - IAI47_20445 0.10 +2.2
333,359 + IAI47_20445 0.16 -0.4
333,359 + IAI47_20445 0.16 -1.0
333,359 + IAI47_20445 0.16 -2.0
333,360 - IAI47_20445 0.16 -1.3
333,428 + IAI47_20445 0.22 -0.6
333,461 - IAI47_20445 0.25 +0.7
333,461 - IAI47_20445 0.25 -1.7
333,461 - IAI47_20445 0.25 -0.9
333,484 + IAI47_20445 0.27 -0.0
333,484 + IAI47_20445 0.27 -2.5
333,484 + IAI47_20445 0.27 -2.1
333,485 - IAI47_20445 0.27 +1.3
333,535 - IAI47_20445 0.32 +0.2
333,618 - IAI47_20445 0.40 +0.4
333,618 - IAI47_20445 0.40 +1.6
333,618 - IAI47_20445 0.40 +1.3
333,659 + IAI47_20445 0.44 -0.2
333,659 + IAI47_20445 0.44 +0.1
333,660 - IAI47_20445 0.44 +0.0
333,660 - IAI47_20445 0.44 -0.9
333,717 - IAI47_20445 0.49 -0.6
333,717 - IAI47_20445 0.49 -0.3
333,729 - IAI47_20445 0.50 +0.1
333,732 + IAI47_20445 0.51 -0.9
333,733 - IAI47_20445 0.51 +0.6
333,752 + IAI47_20445 0.52 -1.1
333,753 - IAI47_20445 0.53 +0.4
333,753 - IAI47_20445 0.53 -0.3
333,778 + IAI47_20445 0.55 +1.0
333,779 - IAI47_20445 0.55 -0.6
333,784 + IAI47_20445 0.55 +0.5
333,784 + IAI47_20445 0.55 -0.5
333,784 + IAI47_20445 0.55 -1.3
333,784 + IAI47_20445 0.55 -1.1
333,784 + IAI47_20445 0.55 -1.4
333,784 + IAI47_20445 0.55 +0.4
333,784 + IAI47_20445 0.55 -1.1
333,784 + IAI47_20445 0.55 -2.9
333,784 + IAI47_20445 0.55 +1.2
333,784 + IAI47_20445 0.55 -0.5
333,784 + IAI47_20445 0.55 +1.0
333,785 - IAI47_20445 0.56 +0.0
333,785 - IAI47_20445 0.56 +0.7
333,785 - IAI47_20445 0.56 -0.1
333,785 - IAI47_20445 0.56 -0.3
333,785 - IAI47_20445 0.56 -1.3
333,785 - IAI47_20445 0.56 -0.3
333,785 - IAI47_20445 0.56 -0.5
333,785 - IAI47_20445 0.56 +1.0
333,785 - IAI47_20445 0.56 +1.5
333,826 + IAI47_20445 0.59 -0.3
333,826 + IAI47_20445 0.59 -0.6
333,826 + IAI47_20445 0.59 +1.4
333,826 + IAI47_20445 0.59 -0.4
333,827 - IAI47_20445 0.59 +0.7
333,827 - IAI47_20445 0.59 -1.1
333,827 - IAI47_20445 0.59 +1.0
333,834 - IAI47_20445 0.60 -1.2
333,896 - IAI47_20445 0.66 +1.3
333,916 + IAI47_20445 0.68 +0.4
333,916 + IAI47_20445 0.68 -1.7
333,916 + IAI47_20445 0.68 +0.2
333,917 - IAI47_20445 0.68 +0.0
333,917 - IAI47_20445 0.68 -0.5
333,917 - IAI47_20445 0.68 +2.2
334,071 + IAI47_20445 0.82 +1.7
334,071 + IAI47_20445 0.82 +0.5
334,071 + IAI47_20445 0.82 +0.8
334,072 - IAI47_20445 0.82 -0.7

Or see this region's nucleotide sequence