Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06380 and PGA1_c06390 are separated by 192 nucleotides PGA1_c06390 and PGA1_c06400 are separated by 100 nucleotides PGA1_c06400 and PGA1_c06410 are separated by 9 nucleotides
PGA1_c06380: PGA1_c06380 - putative methylthioadenosine phosphorylase, at 653,008 to 654,021
_c06380
PGA1_c06390: PGA1_c06390 - putative sulfate transporter, at 654,214 to 655,854
_c06390
PGA1_c06400: PGA1_c06400 - putative antibiotic acetyltransferase, at 655,955 to 656,596
_c06400
PGA1_c06410: PGA1_c06410 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 656,606 to 657,211
_c06410
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1 at 653.251 kb on - strand, within PGA1_c06380 at 653.311 kb on - strand, within PGA1_c06380 at 653.337 kb on + strand, within PGA1_c06380 at 653.345 kb on - strand, within PGA1_c06380 at 653.500 kb on + strand, within PGA1_c06380 at 653.617 kb on + strand, within PGA1_c06380 at 653.643 kb on + strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.764 kb on + strand, within PGA1_c06380 at 653.767 kb on - strand, within PGA1_c06380 at 653.778 kb on + strand, within PGA1_c06380 at 653.783 kb on + strand, within PGA1_c06380 at 653.894 kb on + strand, within PGA1_c06380 at 653.925 kb on - strand at 653.926 kb on - strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.019 kb on + strand at 654.022 kb on - strand at 654.028 kb on - strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.071 kb on - strand at 654.071 kb on - strand at 654.072 kb on - strand at 654.104 kb on - strand at 654.130 kb on + strand at 654.143 kb on + strand at 654.151 kb on - strand at 654.203 kb on + strand at 654.224 kb on + strand at 654.279 kb on + strand at 654.321 kb on - strand at 654.412 kb on + strand, within PGA1_c06390 at 654.507 kb on + strand, within PGA1_c06390 at 654.516 kb on + strand, within PGA1_c06390 at 654.542 kb on + strand, within PGA1_c06390 at 654.562 kb on + strand, within PGA1_c06390 at 654.620 kb on + strand, within PGA1_c06390 at 654.681 kb on + strand, within PGA1_c06390 at 654.689 kb on - strand, within PGA1_c06390 at 654.776 kb on - strand, within PGA1_c06390 at 654.787 kb on - strand, within PGA1_c06390 at 654.931 kb on + strand, within PGA1_c06390 at 654.939 kb on - strand, within PGA1_c06390 at 655.026 kb on + strand, within PGA1_c06390 at 655.078 kb on + strand, within PGA1_c06390 at 655.214 kb on - strand, within PGA1_c06390 at 655.238 kb on - strand, within PGA1_c06390 at 655.297 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.434 kb on + strand, within PGA1_c06390 at 655.469 kb on - strand, within PGA1_c06390 at 655.495 kb on + strand, within PGA1_c06390 at 655.518 kb on + strand, within PGA1_c06390 at 655.532 kb on + strand, within PGA1_c06390 at 655.534 kb on + strand, within PGA1_c06390 at 655.534 kb on + strand, within PGA1_c06390 at 655.637 kb on + strand, within PGA1_c06390 at 655.648 kb on - strand, within PGA1_c06390 at 655.700 kb on - strand at 655.750 kb on + strand at 655.776 kb on + strand at 655.815 kb on + strand at 655.815 kb on + strand at 655.856 kb on - strand at 655.858 kb on + strand at 655.866 kb on - strand at 655.891 kb on + strand at 655.956 kb on - strand at 656.038 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.343 kb on + strand, within PGA1_c06400 at 656.354 kb on + strand, within PGA1_c06400 at 656.497 kb on - strand, within PGA1_c06400 at 656.529 kb on - strand, within PGA1_c06400 at 656.565 kb on - strand at 656.581 kb on + strand at 656.594 kb on - strand at 656.644 kb on + strand at 656.695 kb on + strand, within PGA1_c06410 at 656.761 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.790 kb on - strand, within PGA1_c06410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 653,251 - PGA1_c06380 0.24 +1.3 653,311 - PGA1_c06380 0.30 +0.4 653,337 + PGA1_c06380 0.32 +0.5 653,345 - PGA1_c06380 0.33 +0.4 653,500 + PGA1_c06380 0.49 -1.2 653,617 + PGA1_c06380 0.60 -0.9 653,643 + PGA1_c06380 0.63 -0.4 653,651 - PGA1_c06380 0.63 -0.5 653,651 - PGA1_c06380 0.63 +0.5 653,764 + PGA1_c06380 0.75 -0.5 653,767 - PGA1_c06380 0.75 -0.1 653,778 + PGA1_c06380 0.76 -1.5 653,783 + PGA1_c06380 0.76 -0.1 653,894 + PGA1_c06380 0.87 +1.1 653,925 - +0.9 653,926 - +0.3 654,018 + -0.6 654,018 + -0.6 654,018 + +0.3 654,019 + +1.0 654,022 - -0.2 654,028 - -0.1 654,063 + -1.3 654,063 + +0.5 654,063 + +0.2 654,071 - +0.2 654,071 - +0.3 654,072 - +1.1 654,104 - +0.1 654,130 + -0.5 654,143 + -0.8 654,151 - +0.2 654,203 + -0.3 654,224 + -1.7 654,279 + -1.0 654,321 - -0.6 654,412 + PGA1_c06390 0.12 -2.1 654,507 + PGA1_c06390 0.18 -1.0 654,516 + PGA1_c06390 0.18 +0.2 654,542 + PGA1_c06390 0.20 -2.0 654,562 + PGA1_c06390 0.21 -2.1 654,620 + PGA1_c06390 0.25 -1.5 654,681 + PGA1_c06390 0.28 -1.6 654,689 - PGA1_c06390 0.29 -0.3 654,776 - PGA1_c06390 0.34 -0.7 654,787 - PGA1_c06390 0.35 -0.3 654,931 + PGA1_c06390 0.44 -0.7 654,939 - PGA1_c06390 0.44 -0.8 655,026 + PGA1_c06390 0.49 +1.2 655,078 + PGA1_c06390 0.53 -0.0 655,214 - PGA1_c06390 0.61 +0.1 655,238 - PGA1_c06390 0.62 -0.1 655,297 + PGA1_c06390 0.66 -0.8 655,340 + PGA1_c06390 0.69 +0.8 655,340 + PGA1_c06390 0.69 +0.1 655,340 + PGA1_c06390 0.69 -0.5 655,348 - PGA1_c06390 0.69 +1.0 655,348 - PGA1_c06390 0.69 -1.1 655,348 - PGA1_c06390 0.69 +0.8 655,434 + PGA1_c06390 0.74 -2.2 655,469 - PGA1_c06390 0.76 -1.7 655,495 + PGA1_c06390 0.78 -0.9 655,518 + PGA1_c06390 0.79 -0.6 655,532 + PGA1_c06390 0.80 +0.0 655,534 + PGA1_c06390 0.80 -0.4 655,534 + PGA1_c06390 0.80 -1.0 655,637 + PGA1_c06390 0.87 -1.8 655,648 - PGA1_c06390 0.87 +0.0 655,700 - -0.2 655,750 + +0.2 655,776 + +0.2 655,815 + +0.1 655,815 + -1.3 655,856 - -0.5 655,858 + +0.3 655,866 - +0.0 655,891 + +0.8 655,956 - -0.3 656,038 + PGA1_c06400 0.13 +1.3 656,103 + PGA1_c06400 0.23 -0.3 656,103 + PGA1_c06400 0.23 -0.3 656,343 + PGA1_c06400 0.60 +0.1 656,354 + PGA1_c06400 0.62 -0.7 656,497 - PGA1_c06400 0.84 -0.3 656,529 - PGA1_c06400 0.89 -0.7 656,565 - -0.9 656,581 + +0.3 656,594 - -1.2 656,644 + -0.5 656,695 + PGA1_c06410 0.15 +0.7 656,761 + PGA1_c06410 0.26 -1.0 656,772 + PGA1_c06410 0.27 +0.6 656,772 + PGA1_c06410 0.27 +1.1 656,790 - PGA1_c06410 0.30 -0.1
Or see this region's nucleotide sequence