Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01420 and PGA1_262p01430 overlap by 4 nucleotides PGA1_262p01430 and PGA1_262p01440 are separated by 103 nucleotides
PGA1_262p01420: PGA1_262p01420 - Protein of unknown function (DUF3726)., at 154,036 to 154,686
_262p01420
PGA1_262p01430: PGA1_262p01430 - hypothetical protein, at 154,683 to 156,374
_262p01430
PGA1_262p01440: PGA1_262p01440 - BCCT transporter, at 156,478 to 158,022
_262p01440
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.691 kb on - strand at 153.749 kb on - strand at 153.749 kb on - strand at 153.949 kb on + strand at 154.006 kb on - strand at 154.110 kb on + strand, within PGA1_262p01420 at 154.469 kb on + strand, within PGA1_262p01420 at 154.697 kb on + strand at 154.743 kb on - strand at 154.839 kb on + strand at 154.995 kb on + strand, within PGA1_262p01430 at 155.002 kb on + strand, within PGA1_262p01430 at 155.171 kb on + strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.261 kb on - strand, within PGA1_262p01430 at 155.316 kb on - strand, within PGA1_262p01430 at 155.350 kb on + strand, within PGA1_262p01430 at 155.369 kb on + strand, within PGA1_262p01430 at 155.377 kb on - strand, within PGA1_262p01430 at 155.479 kb on - strand, within PGA1_262p01430 at 155.509 kb on + strand, within PGA1_262p01430 at 155.517 kb on - strand, within PGA1_262p01430 at 155.527 kb on - strand, within PGA1_262p01430 at 155.678 kb on - strand, within PGA1_262p01430 at 155.798 kb on - strand, within PGA1_262p01430 at 155.877 kb on - strand, within PGA1_262p01430 at 155.991 kb on - strand, within PGA1_262p01430 at 156.028 kb on + strand, within PGA1_262p01430 at 156.081 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.105 kb on - strand, within PGA1_262p01430 at 156.119 kb on + strand, within PGA1_262p01430 at 156.207 kb on + strand at 156.207 kb on + strand at 156.215 kb on - strand at 156.299 kb on + strand at 156.412 kb on - strand at 156.445 kb on - strand at 156.491 kb on + strand at 156.495 kb on + strand at 156.547 kb on + strand at 156.633 kb on - strand, within PGA1_262p01440 at 156.660 kb on + strand, within PGA1_262p01440 at 157.022 kb on - strand, within PGA1_262p01440 at 157.093 kb on - strand, within PGA1_262p01440 at 157.215 kb on - strand, within PGA1_262p01440 at 157.344 kb on + strand, within PGA1_262p01440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 153,691 - +1.2 153,749 - -1.2 153,749 - +0.1 153,949 + -0.6 154,006 - +0.6 154,110 + PGA1_262p01420 0.11 +0.6 154,469 + PGA1_262p01420 0.67 -0.1 154,697 + +0.1 154,743 - -0.0 154,839 + +0.4 154,995 + PGA1_262p01430 0.18 +0.3 155,002 + PGA1_262p01430 0.19 -1.4 155,171 + PGA1_262p01430 0.29 +0.9 155,174 - PGA1_262p01430 0.29 +0.3 155,174 - PGA1_262p01430 0.29 -0.0 155,261 - PGA1_262p01430 0.34 -0.1 155,316 - PGA1_262p01430 0.37 +0.2 155,350 + PGA1_262p01430 0.39 -0.9 155,369 + PGA1_262p01430 0.41 -0.6 155,377 - PGA1_262p01430 0.41 -1.6 155,479 - PGA1_262p01430 0.47 +0.5 155,509 + PGA1_262p01430 0.49 -1.2 155,517 - PGA1_262p01430 0.49 -0.7 155,527 - PGA1_262p01430 0.50 -0.2 155,678 - PGA1_262p01430 0.59 -1.4 155,798 - PGA1_262p01430 0.66 +0.6 155,877 - PGA1_262p01430 0.71 -0.1 155,991 - PGA1_262p01430 0.77 -0.2 156,028 + PGA1_262p01430 0.79 -0.2 156,081 - PGA1_262p01430 0.83 -0.5 156,091 - PGA1_262p01430 0.83 -1.2 156,091 - PGA1_262p01430 0.83 -0.7 156,105 - PGA1_262p01430 0.84 -1.2 156,119 + PGA1_262p01430 0.85 -0.7 156,207 + -1.9 156,207 + -0.0 156,215 - -1.4 156,299 + +0.7 156,412 - +1.0 156,445 - -0.4 156,491 + -1.1 156,495 + +0.5 156,547 + -0.8 156,633 - PGA1_262p01440 0.10 +0.0 156,660 + PGA1_262p01440 0.12 +0.1 157,022 - PGA1_262p01440 0.35 +0.0 157,093 - PGA1_262p01440 0.40 -0.8 157,215 - PGA1_262p01440 0.48 -0.1 157,344 + PGA1_262p01440 0.56 +2.2
Or see this region's nucleotide sequence