Strain Fitness in Marinobacter adhaerens HP15 around HP15_3361

Experiment: m.b. Cephalothin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3359 and HP15_3360 are separated by 3 nucleotidesHP15_3360 and HP15_3361 are separated by 19 nucleotidesHP15_3361 and HP15_3362 are separated by 361 nucleotides HP15_3359: HP15_3359 - pseudouridine synthase, Rsu, at 3,521,405 to 3,522,097 _3359 HP15_3360: HP15_3360 - asparaginase, at 3,522,101 to 3,522,580 _3360 HP15_3361: HP15_3361 - peptidase S11, D-alanyl-D-alanine carboxypeptidase 1, at 3,522,600 to 3,523,415 _3361 HP15_3362: HP15_3362 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,523,777 to 3,526,380 _3362 Position (kb) 3522 3523 3524Strain fitness (log2 ratio) -2 -1 0 1at 3521.759 kb on - strand, within HP15_3359at 3521.785 kb on + strand, within HP15_3359at 3521.785 kb on + strand, within HP15_3359at 3521.816 kb on + strand, within HP15_3359at 3521.964 kb on - strand, within HP15_3359at 3522.030 kb on - strandat 3522.107 kb on - strandat 3522.179 kb on + strand, within HP15_3360at 3522.283 kb on - strand, within HP15_3360at 3522.313 kb on - strand, within HP15_3360at 3522.459 kb on - strand, within HP15_3360at 3522.534 kb on + strandat 3522.534 kb on + strandat 3522.541 kb on - strandat 3522.787 kb on - strand, within HP15_3361at 3523.071 kb on + strand, within HP15_3361at 3523.092 kb on - strand, within HP15_3361at 3523.150 kb on - strand, within HP15_3361at 3523.170 kb on + strand, within HP15_3361at 3523.192 kb on + strand, within HP15_3361at 3523.326 kb on - strand, within HP15_3361at 3523.354 kb on - strandat 3523.610 kb on - strandat 3523.625 kb on + strandat 3523.625 kb on + strandat 3523.633 kb on - strandat 3523.633 kb on - strandat 3523.660 kb on + strandat 3523.703 kb on + strandat 3523.832 kb on + strandat 3523.898 kb on - strandat 3523.947 kb on + strandat 3524.118 kb on - strand, within HP15_3362at 3524.125 kb on - strand, within HP15_3362at 3524.204 kb on - strand, within HP15_3362at 3524.402 kb on - strand, within HP15_3362

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml
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3,521,759 - HP15_3359 0.51 +0.0
3,521,785 + HP15_3359 0.55 -0.1
3,521,785 + HP15_3359 0.55 +0.3
3,521,816 + HP15_3359 0.59 -0.1
3,521,964 - HP15_3359 0.81 -0.5
3,522,030 - -1.2
3,522,107 - +0.9
3,522,179 + HP15_3360 0.16 -0.5
3,522,283 - HP15_3360 0.38 +0.1
3,522,313 - HP15_3360 0.44 -0.8
3,522,459 - HP15_3360 0.75 -0.7
3,522,534 + -0.5
3,522,534 + +0.5
3,522,541 - -0.1
3,522,787 - HP15_3361 0.23 +0.7
3,523,071 + HP15_3361 0.58 +0.7
3,523,092 - HP15_3361 0.60 -0.9
3,523,150 - HP15_3361 0.67 +1.2
3,523,170 + HP15_3361 0.70 +1.2
3,523,192 + HP15_3361 0.73 +0.3
3,523,326 - HP15_3361 0.89 +0.4
3,523,354 - +0.8
3,523,610 - -0.1
3,523,625 + +0.4
3,523,625 + +0.4
3,523,633 - +0.2
3,523,633 - -0.2
3,523,660 + -0.4
3,523,703 + +0.2
3,523,832 + +0.3
3,523,898 - -2.0
3,523,947 + -0.2
3,524,118 - HP15_3362 0.13 +0.1
3,524,125 - HP15_3362 0.13 +0.2
3,524,204 - HP15_3362 0.16 +0.5
3,524,402 - HP15_3362 0.24 +0.1

Or see this region's nucleotide sequence