Experiment: m.b. Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3359 and HP15_3360 are separated by 3 nucleotides HP15_3360 and HP15_3361 are separated by 19 nucleotides HP15_3361 and HP15_3362 are separated by 361 nucleotides
HP15_3359: HP15_3359 - pseudouridine synthase, Rsu, at 3,521,405 to 3,522,097
_3359
HP15_3360: HP15_3360 - asparaginase, at 3,522,101 to 3,522,580
_3360
HP15_3361: HP15_3361 - peptidase S11, D-alanyl-D-alanine carboxypeptidase 1, at 3,522,600 to 3,523,415
_3361
HP15_3362: HP15_3362 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,523,777 to 3,526,380
_3362
Position (kb)
3522
3523
3524 Strain fitness (log2 ratio)
-2
-1
0
1 at 3521.759 kb on - strand, within HP15_3359 at 3521.785 kb on + strand, within HP15_3359 at 3521.785 kb on + strand, within HP15_3359 at 3521.816 kb on + strand, within HP15_3359 at 3521.964 kb on - strand, within HP15_3359 at 3522.030 kb on - strand at 3522.107 kb on - strand at 3522.179 kb on + strand, within HP15_3360 at 3522.283 kb on - strand, within HP15_3360 at 3522.313 kb on - strand, within HP15_3360 at 3522.459 kb on - strand, within HP15_3360 at 3522.534 kb on + strand at 3522.534 kb on + strand at 3522.541 kb on - strand at 3522.787 kb on - strand, within HP15_3361 at 3523.071 kb on + strand, within HP15_3361 at 3523.092 kb on - strand, within HP15_3361 at 3523.150 kb on - strand, within HP15_3361 at 3523.170 kb on + strand, within HP15_3361 at 3523.192 kb on + strand, within HP15_3361 at 3523.326 kb on - strand, within HP15_3361 at 3523.354 kb on - strand at 3523.610 kb on - strand at 3523.625 kb on + strand at 3523.625 kb on + strand at 3523.633 kb on - strand at 3523.633 kb on - strand at 3523.660 kb on + strand at 3523.703 kb on + strand at 3523.832 kb on + strand at 3523.898 kb on - strand at 3523.947 kb on + strand at 3524.118 kb on - strand, within HP15_3362 at 3524.125 kb on - strand, within HP15_3362 at 3524.204 kb on - strand, within HP15_3362 at 3524.402 kb on - strand, within HP15_3362
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml remove 3,521,759 - HP15_3359 0.51 +0.0 3,521,785 + HP15_3359 0.55 -0.1 3,521,785 + HP15_3359 0.55 +0.3 3,521,816 + HP15_3359 0.59 -0.1 3,521,964 - HP15_3359 0.81 -0.5 3,522,030 - -1.2 3,522,107 - +0.9 3,522,179 + HP15_3360 0.16 -0.5 3,522,283 - HP15_3360 0.38 +0.1 3,522,313 - HP15_3360 0.44 -0.8 3,522,459 - HP15_3360 0.75 -0.7 3,522,534 + -0.5 3,522,534 + +0.5 3,522,541 - -0.1 3,522,787 - HP15_3361 0.23 +0.7 3,523,071 + HP15_3361 0.58 +0.7 3,523,092 - HP15_3361 0.60 -0.9 3,523,150 - HP15_3361 0.67 +1.2 3,523,170 + HP15_3361 0.70 +1.2 3,523,192 + HP15_3361 0.73 +0.3 3,523,326 - HP15_3361 0.89 +0.4 3,523,354 - +0.8 3,523,610 - -0.1 3,523,625 + +0.4 3,523,625 + +0.4 3,523,633 - +0.2 3,523,633 - -0.2 3,523,660 + -0.4 3,523,703 + +0.2 3,523,832 + +0.3 3,523,898 - -2.0 3,523,947 + -0.2 3,524,118 - HP15_3362 0.13 +0.1 3,524,125 - HP15_3362 0.13 +0.2 3,524,204 - HP15_3362 0.16 +0.5 3,524,402 - HP15_3362 0.24 +0.1
Or see this region's nucleotide sequence