Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01920 and PGA1_c01930 are separated by 2 nucleotides PGA1_c01930 and PGA1_c01940 are separated by 135 nucleotides PGA1_c01940 and PGA1_c01950 are separated by 11 nucleotides
PGA1_c01920: PGA1_c01920 - protease DegQ, at 174,682 to 176,079
_c01920
PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404
_c01930
PGA1_c01940: PGA1_c01940 - crcB-like protein, at 177,540 to 177,920
_c01940
PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963
_c01950
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 175.117 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.188 kb on + strand, within PGA1_c01920 at 175.259 kb on + strand, within PGA1_c01920 at 175.266 kb on - strand, within PGA1_c01920 at 175.288 kb on - strand, within PGA1_c01920 at 175.310 kb on - strand, within PGA1_c01920 at 175.487 kb on - strand, within PGA1_c01920 at 175.498 kb on - strand, within PGA1_c01920 at 175.529 kb on + strand, within PGA1_c01920 at 175.702 kb on + strand, within PGA1_c01920 at 175.737 kb on + strand, within PGA1_c01920 at 175.738 kb on - strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.801 kb on - strand, within PGA1_c01920 at 175.870 kb on + strand, within PGA1_c01920 at 175.885 kb on - strand, within PGA1_c01920 at 175.928 kb on + strand, within PGA1_c01920 at 175.982 kb on + strand at 176.042 kb on + strand at 176.140 kb on - strand at 176.247 kb on + strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.345 kb on + strand, within PGA1_c01930 at 176.431 kb on - strand, within PGA1_c01930 at 176.506 kb on - strand, within PGA1_c01930 at 176.538 kb on - strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.579 kb on + strand, within PGA1_c01930 at 176.651 kb on - strand, within PGA1_c01930 at 176.656 kb on + strand, within PGA1_c01930 at 176.789 kb on - strand, within PGA1_c01930 at 176.861 kb on + strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.900 kb on + strand, within PGA1_c01930 at 177.031 kb on - strand, within PGA1_c01930 at 177.034 kb on + strand, within PGA1_c01930 at 177.074 kb on + strand, within PGA1_c01930 at 177.177 kb on + strand, within PGA1_c01930 at 177.224 kb on + strand, within PGA1_c01930 at 177.233 kb on - strand, within PGA1_c01930 at 177.320 kb on - strand at 177.393 kb on + strand at 177.431 kb on - strand at 177.564 kb on + strand at 177.564 kb on + strand at 177.633 kb on - strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.728 kb on - strand, within PGA1_c01940
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 175,117 + PGA1_c01920 0.31 -0.9 175,133 + PGA1_c01920 0.32 -2.9 175,133 + PGA1_c01920 0.32 +0.5 175,133 + PGA1_c01920 0.32 -0.1 175,133 + PGA1_c01920 0.32 +0.1 175,133 + PGA1_c01920 0.32 -0.2 175,133 + PGA1_c01920 0.32 -0.9 175,133 + PGA1_c01920 0.32 -1.3 175,141 - PGA1_c01920 0.33 -1.1 175,141 - PGA1_c01920 0.33 -0.1 175,141 - PGA1_c01920 0.33 -0.6 175,141 - PGA1_c01920 0.33 -1.9 175,141 - PGA1_c01920 0.33 -0.3 175,141 - PGA1_c01920 0.33 -1.0 175,141 - PGA1_c01920 0.33 -1.4 175,141 - PGA1_c01920 0.33 -0.4 175,141 - PGA1_c01920 0.33 +0.5 175,188 + PGA1_c01920 0.36 -0.8 175,259 + PGA1_c01920 0.41 -1.3 175,266 - PGA1_c01920 0.42 -1.1 175,288 - PGA1_c01920 0.43 -1.7 175,310 - PGA1_c01920 0.45 -0.2 175,487 - PGA1_c01920 0.58 +0.4 175,498 - PGA1_c01920 0.58 -0.5 175,529 + PGA1_c01920 0.61 +0.9 175,702 + PGA1_c01920 0.73 -0.8 175,737 + PGA1_c01920 0.75 -0.4 175,738 - PGA1_c01920 0.76 -0.8 175,793 + PGA1_c01920 0.79 -2.5 175,793 + PGA1_c01920 0.79 -2.3 175,801 - PGA1_c01920 0.80 -0.6 175,870 + PGA1_c01920 0.85 +0.4 175,885 - PGA1_c01920 0.86 -0.2 175,928 + PGA1_c01920 0.89 +0.7 175,982 + -1.5 176,042 + -1.2 176,140 - -0.5 176,247 + PGA1_c01930 0.12 -1.8 176,336 - PGA1_c01930 0.19 +1.5 176,336 - PGA1_c01930 0.19 +1.0 176,345 + PGA1_c01930 0.20 +0.3 176,431 - PGA1_c01930 0.26 -1.5 176,506 - PGA1_c01930 0.32 +0.4 176,538 - PGA1_c01930 0.34 -1.8 176,562 + PGA1_c01930 0.36 -1.0 176,562 + PGA1_c01930 0.36 -0.9 176,562 + PGA1_c01930 0.36 -1.1 176,562 + PGA1_c01930 0.36 -0.8 176,562 + PGA1_c01930 0.36 -0.3 176,562 + PGA1_c01930 0.36 +0.7 176,570 - PGA1_c01930 0.37 +0.2 176,570 - PGA1_c01930 0.37 +0.3 176,579 + PGA1_c01930 0.38 -0.4 176,651 - PGA1_c01930 0.43 -2.1 176,656 + PGA1_c01930 0.43 -1.6 176,789 - PGA1_c01930 0.53 -0.8 176,861 + PGA1_c01930 0.59 -1.1 176,869 - PGA1_c01930 0.59 -0.9 176,869 - PGA1_c01930 0.59 -0.2 176,869 - PGA1_c01930 0.59 -0.1 176,869 - PGA1_c01930 0.59 -0.2 176,869 - PGA1_c01930 0.59 -1.0 176,869 - PGA1_c01930 0.59 -0.9 176,869 - PGA1_c01930 0.59 -0.9 176,878 + PGA1_c01930 0.60 -0.8 176,878 + PGA1_c01930 0.60 -1.4 176,878 + PGA1_c01930 0.60 -0.7 176,886 - PGA1_c01930 0.61 +0.7 176,886 - PGA1_c01930 0.61 -1.8 176,900 + PGA1_c01930 0.62 -2.8 177,031 - PGA1_c01930 0.72 -0.7 177,034 + PGA1_c01930 0.72 -1.6 177,074 + PGA1_c01930 0.75 -0.4 177,177 + PGA1_c01930 0.83 -1.2 177,224 + PGA1_c01930 0.86 -0.6 177,233 - PGA1_c01930 0.87 -1.2 177,320 - -1.2 177,393 + -1.0 177,431 - +0.2 177,564 + -1.0 177,564 + -0.1 177,633 - PGA1_c01940 0.24 -0.0 177,720 + PGA1_c01940 0.47 -1.5 177,720 + PGA1_c01940 0.47 -0.3 177,720 + PGA1_c01940 0.47 -1.6 177,728 - PGA1_c01940 0.49 -0.5
Or see this region's nucleotide sequence