Experiment: MoLS4 with L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b2975 and DVU3285 are separated by 68 nucleotides DVU3285 and DVU3287 are separated by 517 nucleotides DVU3287 and DVU3289 are separated by 481 nucleotides DVU3289 and DVU3290 are separated by 16 nucleotides
DVU3284: b2975 - L-lactate permease (TIGR), at 3,459,535 to 3,461,166
b2975
DVU3285: DVU3285 - hypothetical protein (TIGR), at 3,461,235 to 3,461,411
DVU3285
DVU3287: DVU3287 - glycosyl transferase, group 2 family protein (TIGR), at 3,461,929 to 3,463,614
DVU3287
DVU3289: DVU3289 - hypothetical protein (TIGR), at 3,464,096 to 3,464,260
DVU3289
DVU3290: DVU3290 - conserved domain protein (TIGR), at 3,464,277 to 3,465,332
DVU3290
Position (kb)
3461
3462
3463
3464 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3460.955 kb on - strand, within b2975 at 3461.078 kb on + strand at 3461.178 kb on + strand at 3461.183 kb on + strand at 3461.186 kb on - strand at 3461.191 kb on - strand at 3461.541 kb on - strand at 3461.691 kb on - strand at 3461.695 kb on + strand at 3461.806 kb on + strand at 3461.814 kb on - strand at 3461.858 kb on - strand at 3461.907 kb on + strand at 3461.910 kb on - strand at 3461.949 kb on - strand at 3462.002 kb on - strand at 3462.053 kb on + strand at 3462.054 kb on - strand at 3462.124 kb on + strand, within DVU3287 at 3462.308 kb on - strand, within DVU3287 at 3462.313 kb on + strand, within DVU3287 at 3462.321 kb on - strand, within DVU3287 at 3462.334 kb on - strand, within DVU3287 at 3462.448 kb on + strand, within DVU3287 at 3462.448 kb on + strand, within DVU3287 at 3462.448 kb on + strand, within DVU3287 at 3462.475 kb on - strand, within DVU3287 at 3462.516 kb on + strand, within DVU3287 at 3462.536 kb on - strand, within DVU3287 at 3462.717 kb on - strand, within DVU3287 at 3462.782 kb on - strand, within DVU3287 at 3462.798 kb on + strand, within DVU3287 at 3462.813 kb on + strand, within DVU3287 at 3462.818 kb on + strand, within DVU3287 at 3462.853 kb on - strand, within DVU3287 at 3462.897 kb on + strand, within DVU3287 at 3462.916 kb on + strand, within DVU3287 at 3462.932 kb on - strand, within DVU3287 at 3462.976 kb on + strand, within DVU3287 at 3463.001 kb on + strand, within DVU3287 at 3463.030 kb on - strand, within DVU3287 at 3463.146 kb on - strand, within DVU3287 at 3463.210 kb on + strand, within DVU3287 at 3463.251 kb on - strand, within DVU3287 at 3463.320 kb on - strand, within DVU3287 at 3463.332 kb on + strand, within DVU3287 at 3463.340 kb on - strand, within DVU3287 at 3463.355 kb on - strand, within DVU3287 at 3463.369 kb on + strand, within DVU3287 at 3463.391 kb on + strand, within DVU3287 at 3463.437 kb on - strand, within DVU3287 at 3463.487 kb on - strand at 3463.508 kb on - strand at 3463.526 kb on + strand at 3463.539 kb on - strand at 3463.541 kb on - strand at 3463.551 kb on + strand at 3463.551 kb on + strand at 3463.616 kb on + strand at 3463.705 kb on + strand at 3463.751 kb on - strand at 3463.777 kb on + strand at 3463.785 kb on - strand at 3463.810 kb on - strand at 3463.826 kb on - strand at 3463.834 kb on - strand at 3463.834 kb on - strand at 3463.942 kb on + strand at 3463.965 kb on + strand at 3463.965 kb on + strand at 3464.158 kb on - strand, within DVU3289 at 3464.178 kb on + strand, within DVU3289 at 3464.205 kb on - strand, within DVU3289 at 3464.214 kb on - strand, within DVU3289 at 3464.275 kb on - strand at 3464.286 kb on + strand at 3464.294 kb on - strand at 3464.352 kb on - strand at 3464.436 kb on + strand, within DVU3290 at 3464.443 kb on + strand, within DVU3290 at 3464.444 kb on - strand, within DVU3290 at 3464.444 kb on - strand, within DVU3290 at 3464.444 kb on - strand, within DVU3290 at 3464.451 kb on - strand, within DVU3290 at 3464.451 kb on - strand, within DVU3290 at 3464.490 kb on + strand, within DVU3290 at 3464.497 kb on + strand, within DVU3290 at 3464.498 kb on - strand, within DVU3290 at 3464.498 kb on - strand, within DVU3290 at 3464.500 kb on - strand, within DVU3290 at 3464.525 kb on + strand, within DVU3290 at 3464.537 kb on + strand, within DVU3290 at 3464.537 kb on + strand, within DVU3290
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N) remove 3,460,955 - b2975 DVU3284 0.87 -1.3 3,461,078 + -0.1 3,461,178 + -0.5 3,461,183 + -0.8 3,461,186 - -0.4 3,461,191 - +0.1 3,461,541 - -0.5 3,461,691 - -0.9 3,461,695 + -1.0 3,461,806 + +1.3 3,461,814 - +0.6 3,461,858 - -0.8 3,461,907 + +0.9 3,461,910 - -0.6 3,461,949 - -0.2 3,462,002 - -0.6 3,462,053 + +0.5 3,462,054 - -0.3 3,462,124 + DVU3287 0.12 -0.6 3,462,308 - DVU3287 0.22 -0.3 3,462,313 + DVU3287 0.23 -0.7 3,462,321 - DVU3287 0.23 -0.5 3,462,334 - DVU3287 0.24 -1.2 3,462,448 + DVU3287 0.31 -1.7 3,462,448 + DVU3287 0.31 +0.7 3,462,448 + DVU3287 0.31 +1.0 3,462,475 - DVU3287 0.32 -0.3 3,462,516 + DVU3287 0.35 -0.7 3,462,536 - DVU3287 0.36 -0.7 3,462,717 - DVU3287 0.47 -0.5 3,462,782 - DVU3287 0.51 -0.1 3,462,798 + DVU3287 0.52 -1.4 3,462,813 + DVU3287 0.52 -0.3 3,462,818 + DVU3287 0.53 -2.6 3,462,853 - DVU3287 0.55 -0.2 3,462,897 + DVU3287 0.57 +0.3 3,462,916 + DVU3287 0.59 +0.1 3,462,932 - DVU3287 0.59 -2.3 3,462,976 + DVU3287 0.62 -0.0 3,463,001 + DVU3287 0.64 +0.1 3,463,030 - DVU3287 0.65 -0.6 3,463,146 - DVU3287 0.72 -0.2 3,463,210 + DVU3287 0.76 -0.1 3,463,251 - DVU3287 0.78 -0.2 3,463,320 - DVU3287 0.83 -0.2 3,463,332 + DVU3287 0.83 -1.9 3,463,340 - DVU3287 0.84 +0.1 3,463,355 - DVU3287 0.85 -0.3 3,463,369 + DVU3287 0.85 +0.4 3,463,391 + DVU3287 0.87 +0.9 3,463,437 - DVU3287 0.89 -0.7 3,463,487 - +0.1 3,463,508 - +0.1 3,463,526 + -0.5 3,463,539 - -0.3 3,463,541 - -2.0 3,463,551 + +0.1 3,463,551 + -0.7 3,463,616 + +1.8 3,463,705 + +0.7 3,463,751 - -0.3 3,463,777 + +0.1 3,463,785 - +0.7 3,463,810 - +0.4 3,463,826 - +2.3 3,463,834 - +1.6 3,463,834 - +1.5 3,463,942 + +1.2 3,463,965 + +0.7 3,463,965 + +2.3 3,464,158 - DVU3289 0.38 -1.8 3,464,178 + DVU3289 0.50 +1.0 3,464,205 - DVU3289 0.66 -1.3 3,464,214 - DVU3289 0.72 -0.4 3,464,275 - +0.5 3,464,286 + -2.0 3,464,294 - -1.4 3,464,352 - -1.8 3,464,436 + DVU3290 0.15 -1.5 3,464,443 + DVU3290 0.16 -1.1 3,464,444 - DVU3290 0.16 -3.7 3,464,444 - DVU3290 0.16 -2.9 3,464,444 - DVU3290 0.16 -0.6 3,464,451 - DVU3290 0.16 -1.6 3,464,451 - DVU3290 0.16 -2.6 3,464,490 + DVU3290 0.20 -2.9 3,464,497 + DVU3290 0.21 -0.5 3,464,498 - DVU3290 0.21 -1.7 3,464,498 - DVU3290 0.21 -0.6 3,464,500 - DVU3290 0.21 -2.6 3,464,525 + DVU3290 0.23 -2.3 3,464,537 + DVU3290 0.25 -0.3 3,464,537 + DVU3290 0.25 -1.4
Or see this region's nucleotide sequence