Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3027

Experiment: MoLS4 with L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3026 and glcD are separated by 174 nucleotidesglcD and DVU3028 are separated by 31 nucleotides DVU3026: DVU3026 - L-lactate permease family protein (TIGR), at 3,147,520 to 3,149,232 DVU3026 DVU3027: glcD - glycolate oxidase, subunit GlcD (TIGR), at 3,149,407 to 3,150,792 glcD DVU3028: DVU3028 - iron-sulfur cluster-binding protein (TIGR), at 3,150,824 to 3,152,092 DVU3028 Position (kb) 3149 3150 3151Strain fitness (log2 ratio) -1 0 1 2 3at 3148.485 kb on + strand, within DVU3026at 3148.657 kb on + strand, within DVU3026at 3148.746 kb on + strand, within DVU3026at 3148.770 kb on + strand, within DVU3026at 3148.772 kb on + strand, within DVU3026at 3148.778 kb on - strand, within DVU3026at 3148.833 kb on - strand, within DVU3026at 3148.938 kb on + strand, within DVU3026at 3148.974 kb on - strand, within DVU3026at 3149.136 kb on + strandat 3149.147 kb on + strandat 3149.155 kb on - strandat 3149.179 kb on - strandat 3149.226 kb on + strandat 3149.255 kb on - strandat 3149.533 kb on + strandat 3149.601 kb on + strand, within glcDat 3149.809 kb on + strand, within glcDat 3150.028 kb on + strand, within glcDat 3150.047 kb on - strand, within glcDat 3150.364 kb on - strand, within glcDat 3150.413 kb on + strand, within glcDat 3150.516 kb on - strand, within glcDat 3150.661 kb on + strandat 3150.678 kb on + strandat 3150.686 kb on - strandat 3150.882 kb on - strandat 3150.905 kb on + strandat 3151.096 kb on + strand, within DVU3028at 3151.152 kb on + strand, within DVU3028at 3151.152 kb on + strand, within DVU3028at 3151.152 kb on + strand, within DVU3028at 3151.160 kb on - strand, within DVU3028at 3151.170 kb on - strand, within DVU3028at 3151.217 kb on - strand, within DVU3028at 3151.217 kb on - strand, within DVU3028at 3151.240 kb on - strand, within DVU3028at 3151.350 kb on + strand, within DVU3028at 3151.424 kb on + strand, within DVU3028at 3151.555 kb on + strand, within DVU3028at 3151.582 kb on + strand, within DVU3028at 3151.656 kb on + strand, within DVU3028at 3151.670 kb on + strand, within DVU3028at 3151.681 kb on + strand, within DVU3028at 3151.725 kb on - strand, within DVU3028at 3151.761 kb on - strand, within DVU3028

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
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3,148,485 + DVU3026 0.56 +0.7
3,148,657 + DVU3026 0.66 +0.2
3,148,746 + DVU3026 0.72 +0.5
3,148,770 + DVU3026 0.73 +0.0
3,148,772 + DVU3026 0.73 +1.0
3,148,778 - DVU3026 0.73 +0.8
3,148,833 - DVU3026 0.77 -0.0
3,148,938 + DVU3026 0.83 -0.5
3,148,974 - DVU3026 0.85 +0.2
3,149,136 + -0.6
3,149,147 + +0.4
3,149,155 - +1.3
3,149,179 - -0.2
3,149,226 + +0.2
3,149,255 - -1.1
3,149,533 + +0.8
3,149,601 + glcD DVU3027 0.14 +1.0
3,149,809 + glcD DVU3027 0.29 +0.6
3,150,028 + glcD DVU3027 0.45 +0.0
3,150,047 - glcD DVU3027 0.46 +2.5
3,150,364 - glcD DVU3027 0.69 +1.3
3,150,413 + glcD DVU3027 0.73 +1.5
3,150,516 - glcD DVU3027 0.80 +0.8
3,150,661 + +0.3
3,150,678 + +1.9
3,150,686 - +2.6
3,150,882 - +1.9
3,150,905 + +0.6
3,151,096 + DVU3028 0.21 +0.9
3,151,152 + DVU3028 0.26 +1.5
3,151,152 + DVU3028 0.26 +0.9
3,151,152 + DVU3028 0.26 +3.2
3,151,160 - DVU3028 0.26 -1.4
3,151,170 - DVU3028 0.27 +1.1
3,151,217 - DVU3028 0.31 +1.3
3,151,217 - DVU3028 0.31 +1.4
3,151,240 - DVU3028 0.33 +1.2
3,151,350 + DVU3028 0.41 +0.1
3,151,424 + DVU3028 0.47 +0.7
3,151,555 + DVU3028 0.58 +2.0
3,151,582 + DVU3028 0.60 +0.2
3,151,656 + DVU3028 0.66 +0.5
3,151,670 + DVU3028 0.67 +0.3
3,151,681 + DVU3028 0.68 +0.3
3,151,725 - DVU3028 0.71 +1.2
3,151,761 - DVU3028 0.74 +0.0

Or see this region's nucleotide sequence