Experiment: MoLS4 with L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1884 and gatB are separated by 324 nucleotides gatB and DVU1886 are separated by 2 nucleotides DVU1886 and DVU1887 are separated by 21 nucleotides
DVU1884: DVU1884 - methyl-accepting chemotaxis protein (TIGR), at 1,953,750 to 1,956,152
DVU1884
DVU1885: gatB - glutamyl-tRNA(Gln) amidotransferase, B subunit (TIGR), at 1,956,477 to 1,957,907
gatB
DVU1886: DVU1886 - hypothetical protein (TIGR), at 1,957,910 to 1,958,587
DVU1886
DVU1887: DVU1887 - hypothetical protein (TIGR), at 1,958,609 to 1,960,351
DVU1887
Position (kb)
1956
1957
1958 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1955.607 kb on + strand, within DVU1884 at 1955.607 kb on + strand, within DVU1884 at 1955.653 kb on + strand, within DVU1884 at 1955.707 kb on + strand, within DVU1884 at 1955.715 kb on - strand, within DVU1884 at 1955.715 kb on - strand, within DVU1884 at 1955.717 kb on - strand, within DVU1884 at 1955.812 kb on + strand, within DVU1884 at 1955.835 kb on + strand, within DVU1884 at 1956.006 kb on - strand at 1956.062 kb on + strand at 1956.062 kb on + strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.203 kb on - strand at 1956.437 kb on - strand at 1957.915 kb on - strand at 1958.623 kb on - strand at 1958.698 kb on - strand at 1958.719 kb on + strand at 1958.807 kb on - strand, within DVU1887 at 1958.858 kb on + strand, within DVU1887 at 1958.892 kb on + strand, within DVU1887
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N) remove 1,955,607 + DVU1884 0.77 -0.2 1,955,607 + DVU1884 0.77 -2.3 1,955,653 + DVU1884 0.79 -1.8 1,955,707 + DVU1884 0.81 +1.4 1,955,715 - DVU1884 0.82 +0.1 1,955,715 - DVU1884 0.82 -0.0 1,955,717 - DVU1884 0.82 -0.8 1,955,812 + DVU1884 0.86 +0.0 1,955,835 + DVU1884 0.87 -0.4 1,956,006 - +0.4 1,956,062 + +1.4 1,956,062 + +0.3 1,956,195 + +0.1 1,956,195 + -1.4 1,956,195 + -0.1 1,956,203 - -0.2 1,956,437 - -0.2 1,957,915 - -0.2 1,958,623 - +1.9 1,958,698 - +1.5 1,958,719 + -3.1 1,958,807 - DVU1887 0.11 +0.0 1,958,858 + DVU1887 0.14 +1.2 1,958,892 + DVU1887 0.16 +0.4
Or see this region's nucleotide sequence