Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.948.1 and Xcc-8004.949.1 overlap by 4 nucleotides Xcc-8004.949.1 and Xcc-8004.950.1 overlap by 4 nucleotides Xcc-8004.950.1 and Xcc-8004.951.1 overlap by 4 nucleotides Xcc-8004.951.1 and Xcc-8004.952.1 overlap by 4 nucleotides
Xcc-8004.948.1: Xcc-8004.948.1 - General secretion pathway protein J, at 892,184 to 892,783
Xcc-8004.948.1
Xcc-8004.949.1: Xcc-8004.949.1 - General secretion pathway protein K, at 892,780 to 893,772
Xcc-8004.949.1
Xcc-8004.950.1: Xcc-8004.950.1 - General secretion pathway protein L, at 893,769 to 894,833
Xcc-8004.950.1
Xcc-8004.951.1: Xcc-8004.951.1 - General secretion pathway protein M, at 894,830 to 895,282
Xcc-8004.951.1
Xcc-8004.952.1: Xcc-8004.952.1 - General secretion pathway protein N, at 895,279 to 895,995
Xcc-8004.952.1
Position (kb) 893
894
895 Strain fitness (log2 ratio) -2
-1
0
1
2 at 892.942 kb on + strand, within Xcc-8004.949.1 at 892.943 kb on - strand, within Xcc-8004.949.1 at 893.173 kb on + strand, within Xcc-8004.949.1 at 893.173 kb on + strand, within Xcc-8004.949.1 at 893.296 kb on + strand, within Xcc-8004.949.1 at 893.297 kb on - strand, within Xcc-8004.949.1 at 893.375 kb on - strand, within Xcc-8004.949.1 at 893.508 kb on - strand, within Xcc-8004.949.1 at 893.623 kb on + strand, within Xcc-8004.949.1 at 893.623 kb on + strand, within Xcc-8004.949.1 at 893.662 kb on + strand, within Xcc-8004.949.1 at 893.711 kb on + strand at 893.711 kb on + strand at 893.712 kb on - strand at 893.712 kb on - strand at 893.712 kb on - strand at 894.666 kb on + strand, within Xcc-8004.950.1 at 894.667 kb on - strand, within Xcc-8004.950.1 at 894.939 kb on - strand, within Xcc-8004.951.1 at 894.939 kb on - strand, within Xcc-8004.951.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 892,942 + Xcc-8004.949.1 0.16 -1.2 892,943 - Xcc-8004.949.1 0.16 +0.8 893,173 + Xcc-8004.949.1 0.40 +0.7 893,173 + Xcc-8004.949.1 0.40 +0.6 893,296 + Xcc-8004.949.1 0.52 +1.4 893,297 - Xcc-8004.949.1 0.52 -2.7 893,375 - Xcc-8004.949.1 0.60 +0.1 893,508 - Xcc-8004.949.1 0.73 +2.0 893,623 + Xcc-8004.949.1 0.85 -0.4 893,623 + Xcc-8004.949.1 0.85 -1.6 893,662 + Xcc-8004.949.1 0.89 +2.6 893,711 + -2.1 893,711 + -1.7 893,712 - +0.2 893,712 - +0.5 893,712 - -2.5 894,666 + Xcc-8004.950.1 0.84 +2.1 894,667 - Xcc-8004.950.1 0.84 -0.9 894,939 - Xcc-8004.951.1 0.24 -0.7 894,939 - Xcc-8004.951.1 0.24 +0.5
Or see this region's nucleotide sequence