Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.797.1 and Xcc-8004.798.1 are separated by 172 nucleotides Xcc-8004.798.1 and Xcc-8004.800.1 are separated by 476 nucleotides Xcc-8004.800.1 and Xcc-8004.801.1 are separated by 180 nucleotides
Xcc-8004.797.1: Xcc-8004.797.1 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 740,057 to 740,827
Xcc-8004.797.1
Xcc-8004.798.1: Xcc-8004.798.1 - putative; ORF located using Glimmer/Genemark, at 741,000 to 741,224
Xcc-8004.798.1
Xcc-8004.800.1: Xcc-8004.800.1 - Endoglucanase (EC 3.2.1.4), at 741,701 to 743,686
Xcc-8004.800.1
Xcc-8004.801.1: Xcc-8004.801.1 - 1,4-beta-cellobiosidase, at 743,867 to 745,567
Xcc-8004.801.1
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 740.704 kb on - strand, within Xcc-8004.797.1 at 741.009 kb on + strand at 741.251 kb on - strand at 741.318 kb on + strand at 741.319 kb on - strand at 741.321 kb on + strand at 741.366 kb on - strand at 741.366 kb on - strand at 741.373 kb on + strand at 741.597 kb on - strand at 741.623 kb on + strand at 741.640 kb on + strand at 741.641 kb on - strand at 741.641 kb on - strand at 741.772 kb on + strand at 741.772 kb on + strand at 741.855 kb on + strand at 741.856 kb on - strand at 742.007 kb on + strand, within Xcc-8004.800.1 at 742.077 kb on - strand, within Xcc-8004.800.1 at 742.123 kb on - strand, within Xcc-8004.800.1 at 742.161 kb on + strand, within Xcc-8004.800.1 at 742.312 kb on + strand, within Xcc-8004.800.1 at 742.598 kb on + strand, within Xcc-8004.800.1 at 743.240 kb on + strand, within Xcc-8004.800.1 at 743.241 kb on - strand, within Xcc-8004.800.1 at 743.250 kb on - strand, within Xcc-8004.800.1 at 743.398 kb on + strand, within Xcc-8004.800.1 at 743.399 kb on - strand, within Xcc-8004.800.1 at 743.461 kb on + strand, within Xcc-8004.800.1 at 743.462 kb on - strand, within Xcc-8004.800.1 at 743.494 kb on + strand at 743.494 kb on + strand at 743.494 kb on + strand at 743.737 kb on + strand at 743.738 kb on - strand at 743.860 kb on + strand at 743.940 kb on + strand at 743.941 kb on - strand at 743.943 kb on + strand at 743.944 kb on - strand at 743.944 kb on - strand at 743.946 kb on + strand at 743.947 kb on - strand at 743.980 kb on - strand at 743.980 kb on - strand at 743.980 kb on - strand at 744.304 kb on + strand, within Xcc-8004.801.1 at 744.305 kb on - strand, within Xcc-8004.801.1 at 744.306 kb on + strand, within Xcc-8004.801.1 at 744.306 kb on + strand, within Xcc-8004.801.1 at 744.307 kb on - strand, within Xcc-8004.801.1 at 744.307 kb on - strand, within Xcc-8004.801.1 at 744.307 kb on - strand, within Xcc-8004.801.1 at 744.322 kb on - strand, within Xcc-8004.801.1 at 744.413 kb on - strand, within Xcc-8004.801.1 at 744.413 kb on - strand, within Xcc-8004.801.1 at 744.516 kb on + strand, within Xcc-8004.801.1 at 744.516 kb on + strand, within Xcc-8004.801.1 at 744.516 kb on + strand, within Xcc-8004.801.1 at 744.517 kb on - strand, within Xcc-8004.801.1 at 744.636 kb on + strand, within Xcc-8004.801.1 at 744.651 kb on + strand, within Xcc-8004.801.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 740,704 - Xcc-8004.797.1 0.84 +0.9 741,009 + +1.9 741,251 - +0.2 741,318 + -1.6 741,319 - +0.9 741,321 + +1.4 741,366 - -0.1 741,366 - -0.9 741,373 + -2.5 741,597 - -2.8 741,623 + +1.5 741,640 + +1.0 741,641 - -0.9 741,641 - +1.4 741,772 + -1.8 741,772 + -0.8 741,855 + -1.6 741,856 - +0.1 742,007 + Xcc-8004.800.1 0.15 -1.1 742,077 - Xcc-8004.800.1 0.19 -2.0 742,123 - Xcc-8004.800.1 0.21 -0.6 742,161 + Xcc-8004.800.1 0.23 -0.8 742,312 + Xcc-8004.800.1 0.31 -0.9 742,598 + Xcc-8004.800.1 0.45 +0.2 743,240 + Xcc-8004.800.1 0.77 -0.1 743,241 - Xcc-8004.800.1 0.78 +0.4 743,250 - Xcc-8004.800.1 0.78 -0.3 743,398 + Xcc-8004.800.1 0.85 -0.0 743,399 - Xcc-8004.800.1 0.85 -0.5 743,461 + Xcc-8004.800.1 0.89 -1.0 743,462 - Xcc-8004.800.1 0.89 -1.5 743,494 + -1.4 743,494 + -3.4 743,494 + +0.7 743,737 + -0.1 743,738 - +0.6 743,860 + -0.5 743,940 + -0.5 743,941 - -2.2 743,943 + -0.4 743,944 - +0.1 743,944 - -2.4 743,946 + +0.8 743,947 - -0.8 743,980 - +0.3 743,980 - -2.1 743,980 - +0.4 744,304 + Xcc-8004.801.1 0.26 -1.4 744,305 - Xcc-8004.801.1 0.26 +0.2 744,306 + Xcc-8004.801.1 0.26 +1.3 744,306 + Xcc-8004.801.1 0.26 -1.0 744,307 - Xcc-8004.801.1 0.26 +1.4 744,307 - Xcc-8004.801.1 0.26 -1.5 744,307 - Xcc-8004.801.1 0.26 +0.7 744,322 - Xcc-8004.801.1 0.27 +0.4 744,413 - Xcc-8004.801.1 0.32 +0.6 744,413 - Xcc-8004.801.1 0.32 -0.0 744,516 + Xcc-8004.801.1 0.38 -0.0 744,516 + Xcc-8004.801.1 0.38 -1.5 744,516 + Xcc-8004.801.1 0.38 -0.1 744,517 - Xcc-8004.801.1 0.38 +1.1 744,636 + Xcc-8004.801.1 0.45 -0.1 744,651 + Xcc-8004.801.1 0.46 -1.3
Or see this region's nucleotide sequence