Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.557.1 and Xcc-8004.558.1 are separated by 131 nucleotides Xcc-8004.558.1 and Xcc-8004.559.1 are separated by 179 nucleotides Xcc-8004.559.1 and Xcc-8004.560.1 overlap by 4 nucleotides Xcc-8004.560.1 and Xcc-8004.562.1 are separated by 221 nucleotides
Xcc-8004.557.1: Xcc-8004.557.1 - cation efflux system protein, at 514,988 to 518,086
Xcc-8004.557.1
Xcc-8004.558.1: Xcc-8004.558.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 518,218 to 519,024
Xcc-8004.558.1
Xcc-8004.559.1: Xcc-8004.559.1 - FIG01213048: hypothetical protein, at 519,204 to 519,539
Xcc-8004.559.1
Xcc-8004.560.1: Xcc-8004.560.1 - hypothetical protein, at 519,536 to 519,754
Xcc-8004.560.1
Xcc-8004.562.1: Xcc-8004.562.1 - ATP-dependent RNA helicase RhlE, at 519,976 to 521,268
Xcc-8004.562.1
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 517.277 kb on - strand, within Xcc-8004.557.1 at 517.353 kb on + strand, within Xcc-8004.557.1 at 517.353 kb on + strand, within Xcc-8004.557.1 at 517.353 kb on + strand, within Xcc-8004.557.1 at 517.353 kb on + strand, within Xcc-8004.557.1 at 517.354 kb on - strand, within Xcc-8004.557.1 at 517.357 kb on + strand, within Xcc-8004.557.1 at 517.357 kb on + strand, within Xcc-8004.557.1 at 517.357 kb on + strand, within Xcc-8004.557.1 at 517.357 kb on + strand, within Xcc-8004.557.1 at 517.358 kb on - strand, within Xcc-8004.557.1 at 517.358 kb on - strand, within Xcc-8004.557.1 at 517.949 kb on + strand at 518.013 kb on - strand at 518.056 kb on + strand at 518.311 kb on + strand, within Xcc-8004.558.1 at 518.517 kb on - strand, within Xcc-8004.558.1 at 518.543 kb on + strand, within Xcc-8004.558.1 at 518.543 kb on + strand, within Xcc-8004.558.1 at 518.544 kb on - strand, within Xcc-8004.558.1 at 518.638 kb on + strand, within Xcc-8004.558.1 at 518.638 kb on + strand, within Xcc-8004.558.1 at 518.639 kb on - strand, within Xcc-8004.558.1 at 518.639 kb on - strand, within Xcc-8004.558.1 at 518.639 kb on - strand, within Xcc-8004.558.1 at 518.639 kb on - strand, within Xcc-8004.558.1 at 518.650 kb on + strand, within Xcc-8004.558.1 at 518.651 kb on - strand, within Xcc-8004.558.1 at 518.651 kb on - strand, within Xcc-8004.558.1 at 518.651 kb on - strand, within Xcc-8004.558.1 at 518.747 kb on - strand, within Xcc-8004.558.1 at 518.749 kb on - strand, within Xcc-8004.558.1 at 519.082 kb on + strand at 519.082 kb on + strand at 519.083 kb on - strand at 519.173 kb on + strand at 519.174 kb on - strand at 519.174 kb on - strand at 519.216 kb on + strand at 519.216 kb on + strand at 519.285 kb on + strand, within Xcc-8004.559.1 at 519.286 kb on - strand, within Xcc-8004.559.1 at 519.286 kb on - strand, within Xcc-8004.559.1 at 519.286 kb on - strand, within Xcc-8004.559.1 at 519.286 kb on - strand, within Xcc-8004.559.1 at 519.286 kb on - strand, within Xcc-8004.559.1 at 519.701 kb on - strand, within Xcc-8004.560.1 at 519.763 kb on + strand at 519.764 kb on - strand at 519.846 kb on + strand at 519.846 kb on + strand at 519.847 kb on - strand at 519.847 kb on - strand at 519.944 kb on + strand at 519.944 kb on + strand at 519.944 kb on + strand at 519.963 kb on - strand at 519.963 kb on - strand at 519.972 kb on - strand at 520.015 kb on + strand at 520.015 kb on + strand at 520.015 kb on + strand at 520.015 kb on + strand at 520.016 kb on - strand at 520.016 kb on - strand at 520.016 kb on - strand at 520.016 kb on - strand at 520.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 517,277 - Xcc-8004.557.1 0.74 +1.4 517,353 + Xcc-8004.557.1 0.76 -2.3 517,353 + Xcc-8004.557.1 0.76 -2.0 517,353 + Xcc-8004.557.1 0.76 +0.6 517,353 + Xcc-8004.557.1 0.76 -1.2 517,354 - Xcc-8004.557.1 0.76 +0.5 517,357 + Xcc-8004.557.1 0.76 +0.4 517,357 + Xcc-8004.557.1 0.76 +3.8 517,357 + Xcc-8004.557.1 0.76 -1.3 517,357 + Xcc-8004.557.1 0.76 -2.2 517,358 - Xcc-8004.557.1 0.76 -1.7 517,358 - Xcc-8004.557.1 0.76 -2.5 517,949 + +1.6 518,013 - +2.9 518,056 + -0.6 518,311 + Xcc-8004.558.1 0.12 -1.3 518,517 - Xcc-8004.558.1 0.37 -0.9 518,543 + Xcc-8004.558.1 0.40 +0.3 518,543 + Xcc-8004.558.1 0.40 -0.1 518,544 - Xcc-8004.558.1 0.40 -2.4 518,638 + Xcc-8004.558.1 0.52 -0.5 518,638 + Xcc-8004.558.1 0.52 -0.1 518,639 - Xcc-8004.558.1 0.52 -1.7 518,639 - Xcc-8004.558.1 0.52 +0.6 518,639 - Xcc-8004.558.1 0.52 -1.2 518,639 - Xcc-8004.558.1 0.52 -2.4 518,650 + Xcc-8004.558.1 0.54 -0.4 518,651 - Xcc-8004.558.1 0.54 +0.8 518,651 - Xcc-8004.558.1 0.54 -0.9 518,651 - Xcc-8004.558.1 0.54 -1.2 518,747 - Xcc-8004.558.1 0.66 -1.6 518,749 - Xcc-8004.558.1 0.66 +0.1 519,082 + -0.4 519,082 + -0.5 519,083 - +1.5 519,173 + -2.6 519,174 - +0.5 519,174 - +3.4 519,216 + -1.6 519,216 + +1.1 519,285 + Xcc-8004.559.1 0.24 -0.6 519,286 - Xcc-8004.559.1 0.24 -3.6 519,286 - Xcc-8004.559.1 0.24 +0.9 519,286 - Xcc-8004.559.1 0.24 -2.3 519,286 - Xcc-8004.559.1 0.24 -1.6 519,286 - Xcc-8004.559.1 0.24 -0.1 519,701 - Xcc-8004.560.1 0.75 +1.3 519,763 + -1.6 519,764 - -0.3 519,846 + +0.7 519,846 + -2.2 519,847 - -0.9 519,847 - +2.0 519,944 + -0.8 519,944 + -1.7 519,944 + +0.8 519,963 - -0.7 519,963 - +0.9 519,972 - -0.3 520,015 + -0.6 520,015 + +0.8 520,015 + -0.9 520,015 + +0.9 520,016 - -0.1 520,016 - -0.7 520,016 - -1.2 520,016 - -0.3 520,016 - +1.1
Or see this region's nucleotide sequence