Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5198.1 and Xcc-8004.5199.1 are separated by 41 nucleotides Xcc-8004.5199.1 and Xcc-8004.5200.1 are separated by 217 nucleotides Xcc-8004.5200.1 and Xcc-8004.5201.1 are separated by 45 nucleotides
Xcc-8004.5198.1: Xcc-8004.5198.1 - General secretion pathway protein E, at 4,934,201 to 4,936,048
Xcc-8004.5198.1
Xcc-8004.5199.1: Xcc-8004.5199.1 - hypothetical protein, at 4,936,090 to 4,936,395
Xcc-8004.5199.1
Xcc-8004.5200.1: Xcc-8004.5200.1 - hypothetical protein, at 4,936,613 to 4,937,377
Xcc-8004.5200.1
Xcc-8004.5201.1: Xcc-8004.5201.1 - FIG01211164: hypothetical protein, at 4,937,423 to 4,938,322
Xcc-8004.5201.1
Position (kb) 4936
4937
4938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4935.653 kb on + strand, within Xcc-8004.5198.1 at 4935.653 kb on + strand, within Xcc-8004.5198.1 at 4935.653 kb on + strand, within Xcc-8004.5198.1 at 4935.654 kb on - strand, within Xcc-8004.5198.1 at 4935.654 kb on - strand, within Xcc-8004.5198.1 at 4935.654 kb on - strand, within Xcc-8004.5198.1 at 4935.654 kb on - strand, within Xcc-8004.5198.1 at 4935.842 kb on + strand, within Xcc-8004.5198.1 at 4935.843 kb on - strand, within Xcc-8004.5198.1 at 4935.843 kb on - strand, within Xcc-8004.5198.1 at 4935.863 kb on + strand, within Xcc-8004.5198.1 at 4935.863 kb on + strand, within Xcc-8004.5198.1 at 4935.863 kb on + strand, within Xcc-8004.5198.1 at 4935.863 kb on + strand, within Xcc-8004.5198.1 at 4935.863 kb on + strand, within Xcc-8004.5198.1 at 4935.864 kb on - strand at 4935.864 kb on - strand at 4935.864 kb on - strand at 4935.896 kb on - strand at 4936.214 kb on - strand, within Xcc-8004.5199.1 at 4936.289 kb on + strand, within Xcc-8004.5199.1 at 4936.289 kb on + strand, within Xcc-8004.5199.1 at 4936.289 kb on + strand, within Xcc-8004.5199.1 at 4936.290 kb on - strand, within Xcc-8004.5199.1 at 4936.290 kb on - strand, within Xcc-8004.5199.1 at 4936.290 kb on - strand, within Xcc-8004.5199.1 at 4936.463 kb on + strand at 4936.463 kb on + strand at 4936.463 kb on + strand at 4936.464 kb on - strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.517 kb on + strand at 4936.517 kb on + strand at 4936.518 kb on - strand at 4936.518 kb on - strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.573 kb on - strand at 4936.673 kb on + strand at 4936.674 kb on - strand at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.901 kb on + strand, within Xcc-8004.5200.1 at 4936.901 kb on + strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.098 kb on - strand, within Xcc-8004.5200.1 at 4937.098 kb on - strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.375 kb on + strand at 4937.405 kb on + strand at 4938.116 kb on + strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.235 kb on - strand at 4938.235 kb on - strand at 4938.236 kb on + strand at 4938.237 kb on - strand at 4938.237 kb on - strand at 4938.237 kb on - strand at 4938.324 kb on - strand at 4938.337 kb on + strand at 4938.337 kb on + strand at 4938.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,935,653 + Xcc-8004.5198.1 0.79 -0.3 4,935,653 + Xcc-8004.5198.1 0.79 +1.6 4,935,653 + Xcc-8004.5198.1 0.79 -1.6 4,935,654 - Xcc-8004.5198.1 0.79 +0.1 4,935,654 - Xcc-8004.5198.1 0.79 -0.9 4,935,654 - Xcc-8004.5198.1 0.79 +1.7 4,935,654 - Xcc-8004.5198.1 0.79 +2.6 4,935,842 + Xcc-8004.5198.1 0.89 +1.7 4,935,843 - Xcc-8004.5198.1 0.89 +0.9 4,935,843 - Xcc-8004.5198.1 0.89 -0.1 4,935,863 + Xcc-8004.5198.1 0.90 +1.7 4,935,863 + Xcc-8004.5198.1 0.90 +0.8 4,935,863 + Xcc-8004.5198.1 0.90 -3.2 4,935,863 + Xcc-8004.5198.1 0.90 +1.5 4,935,863 + Xcc-8004.5198.1 0.90 -1.1 4,935,864 - +2.0 4,935,864 - -0.0 4,935,864 - +0.0 4,935,896 - +1.4 4,936,214 - Xcc-8004.5199.1 0.41 -0.8 4,936,289 + Xcc-8004.5199.1 0.65 -0.5 4,936,289 + Xcc-8004.5199.1 0.65 +1.1 4,936,289 + Xcc-8004.5199.1 0.65 -2.8 4,936,290 - Xcc-8004.5199.1 0.65 +2.4 4,936,290 - Xcc-8004.5199.1 0.65 +0.1 4,936,290 - Xcc-8004.5199.1 0.65 +0.9 4,936,463 + +2.2 4,936,463 + -1.0 4,936,463 + +1.2 4,936,464 - -0.5 4,936,500 + -2.7 4,936,500 + -0.9 4,936,500 + +0.2 4,936,500 + -2.1 4,936,500 + +0.6 4,936,500 + +0.4 4,936,500 + -1.1 4,936,500 + +2.3 4,936,500 + +1.7 4,936,500 + -1.7 4,936,500 + -1.4 4,936,500 + -1.9 4,936,500 + -0.1 4,936,500 + +0.7 4,936,500 + -2.1 4,936,500 + +0.2 4,936,500 + +0.4 4,936,500 + +2.6 4,936,500 + +1.7 4,936,500 + +1.1 4,936,501 - -0.2 4,936,501 - +0.4 4,936,501 - +0.6 4,936,501 - +0.2 4,936,501 - -0.1 4,936,501 - -1.0 4,936,501 - -2.5 4,936,501 - +1.3 4,936,501 - +1.3 4,936,501 - -1.3 4,936,501 - +0.5 4,936,501 - -0.3 4,936,501 - +2.8 4,936,501 - +0.1 4,936,501 - +0.9 4,936,501 - +0.9 4,936,504 + -0.5 4,936,504 + -1.5 4,936,504 + +0.6 4,936,504 + -2.2 4,936,504 + +1.5 4,936,504 + +1.0 4,936,504 + +0.0 4,936,504 + -0.3 4,936,504 + -1.4 4,936,504 + +0.2 4,936,504 + -1.1 4,936,504 + +0.6 4,936,504 + -1.5 4,936,504 + +1.7 4,936,504 + -0.5 4,936,504 + -1.8 4,936,504 + -2.1 4,936,504 + -0.2 4,936,505 - +1.0 4,936,505 - -0.5 4,936,505 - +0.7 4,936,505 - -1.5 4,936,505 - -0.3 4,936,505 - -2.1 4,936,505 - +0.8 4,936,505 - +1.4 4,936,505 - +0.6 4,936,505 - -0.4 4,936,505 - +1.1 4,936,517 + -0.1 4,936,517 + -0.9 4,936,518 - +0.2 4,936,518 - +0.5 4,936,523 + -1.2 4,936,523 + +1.4 4,936,523 + +2.4 4,936,523 + +0.2 4,936,523 + +0.6 4,936,523 + +1.1 4,936,523 + +0.5 4,936,523 + +1.3 4,936,523 + -0.7 4,936,523 + +1.1 4,936,523 + +1.8 4,936,523 + +0.2 4,936,523 + -2.7 4,936,523 + +3.0 4,936,523 + -1.9 4,936,524 - +0.8 4,936,524 - -0.0 4,936,524 - +0.1 4,936,524 - -0.9 4,936,524 - +0.9 4,936,524 - -2.2 4,936,524 - -1.6 4,936,524 - -0.9 4,936,524 - -1.0 4,936,524 - -0.4 4,936,524 - +0.3 4,936,524 - -0.6 4,936,524 - -0.9 4,936,524 - -0.0 4,936,524 - -2.1 4,936,524 - -1.2 4,936,524 - +0.3 4,936,527 + +0.3 4,936,527 + +0.4 4,936,527 + -1.5 4,936,527 + +0.6 4,936,527 + +1.2 4,936,527 + -2.7 4,936,527 + +0.6 4,936,527 + +0.5 4,936,527 + +1.7 4,936,527 + -1.5 4,936,527 + +0.1 4,936,527 + -2.1 4,936,527 + -0.7 4,936,528 - -2.8 4,936,528 - +0.5 4,936,528 - -0.5 4,936,528 - +0.2 4,936,528 - +1.0 4,936,528 - +0.2 4,936,528 - -1.2 4,936,573 - +1.0 4,936,673 + +1.8 4,936,674 - -1.1 4,936,890 + Xcc-8004.5200.1 0.36 -1.6 4,936,890 + Xcc-8004.5200.1 0.36 -1.0 4,936,890 + Xcc-8004.5200.1 0.36 -0.9 4,936,890 + Xcc-8004.5200.1 0.36 +0.1 4,936,891 - Xcc-8004.5200.1 0.36 +1.6 4,936,891 - Xcc-8004.5200.1 0.36 +0.5 4,936,891 - Xcc-8004.5200.1 0.36 +0.3 4,936,901 + Xcc-8004.5200.1 0.38 -2.7 4,936,901 + Xcc-8004.5200.1 0.38 -0.2 4,936,902 - Xcc-8004.5200.1 0.38 -0.6 4,936,902 - Xcc-8004.5200.1 0.38 -0.5 4,936,902 - Xcc-8004.5200.1 0.38 +0.0 4,936,946 + Xcc-8004.5200.1 0.44 +0.6 4,936,946 + Xcc-8004.5200.1 0.44 -1.7 4,936,946 + Xcc-8004.5200.1 0.44 +1.2 4,936,946 + Xcc-8004.5200.1 0.44 -0.7 4,936,946 + Xcc-8004.5200.1 0.44 -0.6 4,936,946 + Xcc-8004.5200.1 0.44 -1.2 4,936,947 - Xcc-8004.5200.1 0.44 -2.3 4,936,947 - Xcc-8004.5200.1 0.44 +1.2 4,936,947 - Xcc-8004.5200.1 0.44 -2.6 4,936,947 - Xcc-8004.5200.1 0.44 +0.4 4,937,097 + Xcc-8004.5200.1 0.63 -2.6 4,937,097 + Xcc-8004.5200.1 0.63 +0.6 4,937,097 + Xcc-8004.5200.1 0.63 -0.4 4,937,097 + Xcc-8004.5200.1 0.63 -0.8 4,937,098 - Xcc-8004.5200.1 0.63 -0.6 4,937,098 - Xcc-8004.5200.1 0.63 -2.1 4,937,191 + Xcc-8004.5200.1 0.76 -0.9 4,937,191 + Xcc-8004.5200.1 0.76 +1.4 4,937,191 + Xcc-8004.5200.1 0.76 +1.4 4,937,191 + Xcc-8004.5200.1 0.76 +1.8 4,937,192 - Xcc-8004.5200.1 0.76 -0.2 4,937,192 - Xcc-8004.5200.1 0.76 -0.3 4,937,192 - Xcc-8004.5200.1 0.76 -1.8 4,937,192 - Xcc-8004.5200.1 0.76 +2.2 4,937,201 + Xcc-8004.5200.1 0.77 -0.1 4,937,201 + Xcc-8004.5200.1 0.77 -0.1 4,937,201 + Xcc-8004.5200.1 0.77 +0.6 4,937,202 - Xcc-8004.5200.1 0.77 +0.9 4,937,202 - Xcc-8004.5200.1 0.77 +1.7 4,937,202 - Xcc-8004.5200.1 0.77 +0.6 4,937,202 - Xcc-8004.5200.1 0.77 -2.2 4,937,375 + +0.5 4,937,405 + -0.1 4,938,116 + Xcc-8004.5201.1 0.77 -1.1 4,938,117 - Xcc-8004.5201.1 0.77 -2.0 4,938,117 - Xcc-8004.5201.1 0.77 +0.2 4,938,117 - Xcc-8004.5201.1 0.77 +1.0 4,938,117 - Xcc-8004.5201.1 0.77 -0.9 4,938,117 - Xcc-8004.5201.1 0.77 +1.5 4,938,235 - +1.3 4,938,235 - -0.2 4,938,236 + -1.8 4,938,237 - +0.8 4,938,237 - +1.2 4,938,237 - -0.2 4,938,324 - +0.3 4,938,337 + +1.6 4,938,337 + +1.8 4,938,337 + -1.6
Or see this region's nucleotide sequence