Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5101.1 and Xcc-8004.5105.1 are separated by 550 nucleotides Xcc-8004.5105.1 and Xcc-8004.5106.1 are separated by 77 nucleotides Xcc-8004.5106.1 and Xcc-8004.5107.1 are separated by 268 nucleotides Xcc-8004.5107.1 and Xcc-8004.5108.1 overlap by 52 nucleotides
Xcc-8004.5101.1: Xcc-8004.5101.1 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 4,838,663 to 4,839,562
Xcc-8004.5101.1
Xcc-8004.5105.1: Xcc-8004.5105.1 - DNA polymerase I (EC 2.7.7.7), at 4,840,113 to 4,842,896
Xcc-8004.5105.1
Xcc-8004.5106.1: Xcc-8004.5106.1 - FIG01210192: hypothetical protein, at 4,842,974 to 4,843,255
Xcc-8004.5106.1
Xcc-8004.5107.1: Xcc-8004.5107.1 - Uncharacterized protein ImpA, at 4,843,524 to 4,843,643
Xcc-8004.5107.1
Xcc-8004.5108.1: Xcc-8004.5108.1 - Uncharacterized protein ImpA, at 4,843,592 to 4,844,344
Xcc-8004.5108.1
Position (kb) 4840
4841
4842
4843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4839.609 kb on - strand at 4839.609 kb on - strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.676 kb on - strand at 4839.676 kb on - strand at 4839.676 kb on - strand at 4839.676 kb on - strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.728 kb on - strand at 4839.728 kb on - strand at 4839.728 kb on - strand at 4839.763 kb on - strand at 4839.769 kb on + strand at 4839.769 kb on + strand at 4839.769 kb on + strand at 4839.769 kb on + strand at 4839.770 kb on - strand at 4839.770 kb on - strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.838 kb on + strand at 4839.838 kb on + strand at 4839.839 kb on - strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.969 kb on - strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.983 kb on + strand at 4839.984 kb on - strand at 4839.984 kb on - strand at 4840.021 kb on + strand at 4840.028 kb on + strand at 4840.035 kb on + strand at 4840.069 kb on + strand at 4840.070 kb on - strand at 4840.083 kb on + strand at 4840.092 kb on + strand at 4840.092 kb on + strand at 4840.092 kb on + strand at 4840.092 kb on + strand at 4840.093 kb on - strand at 4840.093 kb on - strand at 4840.093 kb on - strand at 4840.093 kb on - strand at 4840.134 kb on - strand at 4842.098 kb on - strand, within Xcc-8004.5105.1 at 4842.695 kb on - strand at 4842.886 kb on - strand at 4842.907 kb on + strand at 4842.907 kb on + strand at 4842.908 kb on - strand at 4842.908 kb on - strand at 4842.943 kb on - strand at 4843.109 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.175 kb on + strand, within Xcc-8004.5106.1 at 4843.175 kb on + strand, within Xcc-8004.5106.1 at 4843.176 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.232 kb on + strand at 4843.232 kb on + strand at 4843.232 kb on + strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.296 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.507 kb on + strand at 4843.675 kb on + strand, within Xcc-8004.5108.1 at 4843.675 kb on + strand, within Xcc-8004.5108.1 at 4843.676 kb on - strand, within Xcc-8004.5108.1 at 4843.676 kb on - strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.679 kb on - strand, within Xcc-8004.5108.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,839,609 - +0.8 4,839,609 - -1.5 4,839,675 + -1.4 4,839,675 + +0.2 4,839,675 + -0.9 4,839,675 + -0.7 4,839,675 + -0.4 4,839,676 - -0.9 4,839,676 - -1.6 4,839,676 - -0.1 4,839,676 - -1.0 4,839,727 + -1.0 4,839,727 + +3.1 4,839,727 + +1.3 4,839,727 + -1.0 4,839,727 + +1.1 4,839,728 - +2.4 4,839,728 - -0.4 4,839,728 - -0.6 4,839,763 - +2.5 4,839,769 + -1.4 4,839,769 + +1.8 4,839,769 + -1.8 4,839,769 + +0.7 4,839,770 - +0.3 4,839,770 - -0.8 4,839,795 + -2.5 4,839,795 + +0.3 4,839,795 + -2.0 4,839,795 + +0.2 4,839,795 + -0.6 4,839,795 + -1.5 4,839,795 + -1.3 4,839,795 + +0.5 4,839,796 - -1.3 4,839,796 - -2.2 4,839,796 - -1.4 4,839,796 - +0.7 4,839,796 - -2.7 4,839,796 - +0.2 4,839,796 - +0.2 4,839,808 + -0.3 4,839,808 + +0.6 4,839,808 + +0.1 4,839,808 + +0.4 4,839,808 + +0.0 4,839,808 + -2.2 4,839,808 + +0.2 4,839,808 + +1.4 4,839,808 + -1.0 4,839,808 + -0.4 4,839,808 + -1.1 4,839,808 + +1.7 4,839,808 + -0.5 4,839,808 + +0.5 4,839,808 + -0.2 4,839,809 - -3.2 4,839,809 - -0.2 4,839,809 - -2.6 4,839,809 - -1.7 4,839,809 - -1.3 4,839,809 - -1.2 4,839,809 - -3.4 4,839,809 - +0.3 4,839,809 - -2.5 4,839,809 - +0.8 4,839,809 - +0.8 4,839,809 - -2.7 4,839,809 - +0.1 4,839,809 - +0.9 4,839,809 - -1.0 4,839,809 - -1.2 4,839,809 - +3.4 4,839,809 - +1.7 4,839,809 - -0.6 4,839,809 - +1.6 4,839,809 - +0.3 4,839,809 - +1.1 4,839,809 - -3.4 4,839,809 - -0.1 4,839,809 - -2.4 4,839,809 - -1.2 4,839,809 - +0.5 4,839,809 - +1.1 4,839,809 - +1.1 4,839,809 - -0.1 4,839,809 - +0.6 4,839,838 + +1.3 4,839,838 + -0.5 4,839,839 - -2.0 4,839,968 + -1.5 4,839,968 + +0.9 4,839,968 + -0.9 4,839,968 + -1.4 4,839,968 + -2.7 4,839,969 - -1.7 4,839,970 + -0.9 4,839,970 + +0.4 4,839,970 + +1.3 4,839,970 + -0.2 4,839,970 + -1.1 4,839,970 + +0.6 4,839,970 + -1.2 4,839,970 + +0.6 4,839,971 - -0.6 4,839,971 - -0.0 4,839,971 - -0.4 4,839,971 - +2.0 4,839,971 - +1.9 4,839,971 - -0.0 4,839,971 - +0.3 4,839,971 - -2.5 4,839,971 - +0.4 4,839,971 - +1.6 4,839,971 - -1.9 4,839,971 - +1.2 4,839,971 - +0.8 4,839,971 - -0.3 4,839,971 - -1.6 4,839,971 - -2.6 4,839,971 - -2.4 4,839,971 - +1.6 4,839,971 - +0.9 4,839,971 - -1.5 4,839,983 + +0.3 4,839,984 - -2.0 4,839,984 - +3.9 4,840,021 + -1.4 4,840,028 + +0.9 4,840,035 + -0.3 4,840,069 + -0.0 4,840,070 - -0.0 4,840,083 + -0.3 4,840,092 + -0.9 4,840,092 + +0.7 4,840,092 + -2.3 4,840,092 + -2.4 4,840,093 - -0.6 4,840,093 - -3.6 4,840,093 - -2.4 4,840,093 - +1.5 4,840,134 - +2.7 4,842,098 - Xcc-8004.5105.1 0.71 +1.6 4,842,695 - +1.6 4,842,886 - -1.1 4,842,907 + -1.1 4,842,907 + +3.0 4,842,908 - +0.8 4,842,908 - -0.4 4,842,943 - +0.3 4,843,109 + Xcc-8004.5106.1 0.48 -1.1 4,843,166 + Xcc-8004.5106.1 0.68 -1.0 4,843,166 + Xcc-8004.5106.1 0.68 +0.7 4,843,166 + Xcc-8004.5106.1 0.68 -2.3 4,843,166 + Xcc-8004.5106.1 0.68 -0.6 4,843,166 + Xcc-8004.5106.1 0.68 +1.0 4,843,166 + Xcc-8004.5106.1 0.68 +1.4 4,843,167 - Xcc-8004.5106.1 0.68 -1.8 4,843,167 - Xcc-8004.5106.1 0.68 +0.9 4,843,167 - Xcc-8004.5106.1 0.68 +0.8 4,843,167 - Xcc-8004.5106.1 0.68 +0.7 4,843,175 + Xcc-8004.5106.1 0.71 +0.5 4,843,175 + Xcc-8004.5106.1 0.71 +0.8 4,843,176 - Xcc-8004.5106.1 0.72 +0.6 4,843,199 - Xcc-8004.5106.1 0.80 +0.5 4,843,199 - Xcc-8004.5106.1 0.80 -1.2 4,843,199 - Xcc-8004.5106.1 0.80 +0.5 4,843,232 + +0.2 4,843,232 + +2.1 4,843,232 + +0.5 4,843,233 - +1.1 4,843,233 - -1.6 4,843,233 - -0.1 4,843,233 - -0.2 4,843,233 - -1.8 4,843,233 - +1.9 4,843,233 - -0.1 4,843,244 + -1.7 4,843,244 + -0.5 4,843,244 + +2.1 4,843,244 + -0.7 4,843,244 + +0.1 4,843,244 + -0.4 4,843,244 + -0.5 4,843,244 + -1.4 4,843,244 + -1.7 4,843,244 + +1.7 4,843,244 + +0.9 4,843,244 + +0.7 4,843,244 + -2.0 4,843,244 + +0.7 4,843,244 + +0.4 4,843,244 + -2.1 4,843,244 + -1.5 4,843,244 + -1.4 4,843,244 + +0.3 4,843,244 + +0.0 4,843,244 + -1.4 4,843,244 + -3.1 4,843,244 + +0.4 4,843,244 + +0.4 4,843,245 - +1.4 4,843,245 - +0.7 4,843,245 - -0.1 4,843,245 - +1.3 4,843,245 - +0.7 4,843,245 - +1.2 4,843,245 - -1.9 4,843,245 - +0.6 4,843,245 - -0.0 4,843,245 - -0.1 4,843,245 - +0.4 4,843,245 - -0.3 4,843,245 - -0.6 4,843,245 - +0.3 4,843,245 - +0.2 4,843,246 + +0.6 4,843,246 + -3.3 4,843,246 + -0.3 4,843,246 + -0.4 4,843,246 + +1.9 4,843,246 + +2.1 4,843,247 - -0.8 4,843,247 - +0.3 4,843,247 - -0.6 4,843,247 - +0.8 4,843,247 - +2.6 4,843,247 - -0.7 4,843,296 + -0.4 4,843,366 + +0.8 4,843,366 + +0.9 4,843,366 + +2.1 4,843,366 + -0.5 4,843,367 - -0.3 4,843,367 - -0.0 4,843,367 - -1.4 4,843,367 - +1.8 4,843,367 - +0.5 4,843,367 - -1.7 4,843,367 - +0.8 4,843,507 + -2.9 4,843,675 + Xcc-8004.5108.1 0.11 -0.3 4,843,675 + Xcc-8004.5108.1 0.11 -0.6 4,843,676 - Xcc-8004.5108.1 0.11 -0.7 4,843,676 - Xcc-8004.5108.1 0.11 -2.2 4,843,678 + Xcc-8004.5108.1 0.11 +0.1 4,843,678 + Xcc-8004.5108.1 0.11 -1.9 4,843,678 + Xcc-8004.5108.1 0.11 -0.4 4,843,678 + Xcc-8004.5108.1 0.11 -0.3 4,843,679 - Xcc-8004.5108.1 0.12 -0.5
Or see this region's nucleotide sequence