Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4707.1 and Xcc-8004.4708.1 are separated by 135 nucleotides Xcc-8004.4708.1 and Xcc-8004.4709.1 are separated by 48 nucleotides Xcc-8004.4709.1 and Xcc-8004.4710.1 are separated by 168 nucleotides Xcc-8004.4710.1 and Xcc-8004.4711.1 overlap by 4 nucleotides
Xcc-8004.4707.1: Xcc-8004.4707.1 - Transcriptional regulator, LysR family, at 4,485,618 to 4,486,544
Xcc-8004.4707.1
Xcc-8004.4708.1: Xcc-8004.4708.1 - Putative translation initiation inhibitor, yjgF family, at 4,486,680 to 4,487,084
Xcc-8004.4708.1
Xcc-8004.4709.1: Xcc-8004.4709.1 - Short-chain dehydrogenase/reductase SDR, at 4,487,133 to 4,488,035
Xcc-8004.4709.1
Xcc-8004.4710.1: Xcc-8004.4710.1 - FIG01211889: hypothetical protein, at 4,488,204 to 4,488,593
Xcc-8004.4710.1
Xcc-8004.4711.1: Xcc-8004.4711.1 - FIG01211524: hypothetical protein, at 4,488,590 to 4,489,156
Xcc-8004.4711.1
Position (kb) 4487
4488
4489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4486.185 kb on - strand, within Xcc-8004.4707.1 at 4486.349 kb on - strand, within Xcc-8004.4707.1 at 4486.351 kb on + strand, within Xcc-8004.4707.1 at 4486.351 kb on + strand, within Xcc-8004.4707.1 at 4486.351 kb on + strand, within Xcc-8004.4707.1 at 4486.579 kb on + strand at 4486.580 kb on - strand at 4486.585 kb on + strand at 4486.585 kb on + strand at 4486.585 kb on + strand at 4486.585 kb on + strand at 4486.585 kb on + strand at 4486.585 kb on + strand at 4486.586 kb on - strand at 4486.586 kb on - strand at 4486.609 kb on + strand at 4486.610 kb on - strand at 4486.630 kb on + strand at 4486.631 kb on - strand at 4486.631 kb on - strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.667 kb on + strand at 4486.668 kb on - strand at 4486.668 kb on - strand at 4486.668 kb on - strand at 4486.675 kb on - strand at 4486.725 kb on + strand, within Xcc-8004.4708.1 at 4486.725 kb on + strand, within Xcc-8004.4708.1 at 4486.725 kb on + strand, within Xcc-8004.4708.1 at 4486.725 kb on + strand, within Xcc-8004.4708.1 at 4486.725 kb on + strand, within Xcc-8004.4708.1 at 4486.726 kb on - strand, within Xcc-8004.4708.1 at 4486.726 kb on - strand, within Xcc-8004.4708.1 at 4486.726 kb on - strand, within Xcc-8004.4708.1 at 4486.726 kb on - strand, within Xcc-8004.4708.1 at 4487.025 kb on + strand, within Xcc-8004.4708.1 at 4487.026 kb on - strand, within Xcc-8004.4708.1 at 4487.026 kb on - strand, within Xcc-8004.4708.1 at 4487.105 kb on + strand at 4487.242 kb on + strand, within Xcc-8004.4709.1 at 4487.284 kb on - strand, within Xcc-8004.4709.1 at 4487.299 kb on - strand, within Xcc-8004.4709.1 at 4487.377 kb on + strand, within Xcc-8004.4709.1 at 4487.377 kb on + strand, within Xcc-8004.4709.1 at 4487.378 kb on - strand, within Xcc-8004.4709.1 at 4487.378 kb on - strand, within Xcc-8004.4709.1 at 4487.408 kb on - strand, within Xcc-8004.4709.1 at 4487.525 kb on - strand, within Xcc-8004.4709.1 at 4487.557 kb on + strand, within Xcc-8004.4709.1 at 4487.557 kb on + strand, within Xcc-8004.4709.1 at 4487.558 kb on - strand, within Xcc-8004.4709.1 at 4487.558 kb on - strand, within Xcc-8004.4709.1 at 4487.620 kb on + strand, within Xcc-8004.4709.1 at 4487.620 kb on + strand, within Xcc-8004.4709.1 at 4487.621 kb on - strand, within Xcc-8004.4709.1 at 4487.621 kb on - strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.890 kb on + strand, within Xcc-8004.4709.1 at 4487.890 kb on + strand, within Xcc-8004.4709.1 at 4487.890 kb on + strand, within Xcc-8004.4709.1 at 4487.950 kb on + strand at 4487.960 kb on - strand at 4488.340 kb on + strand, within Xcc-8004.4710.1 at 4488.340 kb on + strand, within Xcc-8004.4710.1 at 4488.390 kb on + strand, within Xcc-8004.4710.1 at 4488.391 kb on - strand, within Xcc-8004.4710.1 at 4488.391 kb on - strand, within Xcc-8004.4710.1 at 4488.391 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.715 kb on - strand, within Xcc-8004.4711.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,486,185 - Xcc-8004.4707.1 0.61 -0.9 4,486,349 - Xcc-8004.4707.1 0.79 -0.3 4,486,351 + Xcc-8004.4707.1 0.79 -1.3 4,486,351 + Xcc-8004.4707.1 0.79 -2.5 4,486,351 + Xcc-8004.4707.1 0.79 +0.6 4,486,579 + +4.5 4,486,580 - +0.6 4,486,585 + +1.5 4,486,585 + +0.4 4,486,585 + +1.3 4,486,585 + -0.4 4,486,585 + +1.0 4,486,585 + +1.0 4,486,586 - +0.4 4,486,586 - +1.8 4,486,609 + -1.2 4,486,610 - +0.3 4,486,630 + +0.5 4,486,631 - -1.0 4,486,631 - -2.6 4,486,667 + -0.1 4,486,667 + +1.0 4,486,667 + -0.2 4,486,667 + -0.7 4,486,667 + -0.2 4,486,667 + +1.2 4,486,667 + +1.2 4,486,667 + +1.2 4,486,667 + +0.3 4,486,667 + -1.3 4,486,667 + +2.1 4,486,667 + -0.9 4,486,668 - +0.3 4,486,668 - -1.7 4,486,668 - -0.2 4,486,675 - +0.2 4,486,725 + Xcc-8004.4708.1 0.11 -0.7 4,486,725 + Xcc-8004.4708.1 0.11 -0.7 4,486,725 + Xcc-8004.4708.1 0.11 +1.4 4,486,725 + Xcc-8004.4708.1 0.11 +0.6 4,486,725 + Xcc-8004.4708.1 0.11 -0.8 4,486,726 - Xcc-8004.4708.1 0.11 +0.1 4,486,726 - Xcc-8004.4708.1 0.11 +0.3 4,486,726 - Xcc-8004.4708.1 0.11 +1.3 4,486,726 - Xcc-8004.4708.1 0.11 -0.0 4,487,025 + Xcc-8004.4708.1 0.85 +1.2 4,487,026 - Xcc-8004.4708.1 0.85 -0.5 4,487,026 - Xcc-8004.4708.1 0.85 +1.7 4,487,105 + +0.8 4,487,242 + Xcc-8004.4709.1 0.12 +1.0 4,487,284 - Xcc-8004.4709.1 0.17 +0.2 4,487,299 - Xcc-8004.4709.1 0.18 -0.2 4,487,377 + Xcc-8004.4709.1 0.27 -0.0 4,487,377 + Xcc-8004.4709.1 0.27 +1.6 4,487,378 - Xcc-8004.4709.1 0.27 +1.0 4,487,378 - Xcc-8004.4709.1 0.27 -2.3 4,487,408 - Xcc-8004.4709.1 0.30 +0.0 4,487,525 - Xcc-8004.4709.1 0.43 -2.9 4,487,557 + Xcc-8004.4709.1 0.47 -0.9 4,487,557 + Xcc-8004.4709.1 0.47 -0.5 4,487,558 - Xcc-8004.4709.1 0.47 -0.5 4,487,558 - Xcc-8004.4709.1 0.47 +0.1 4,487,620 + Xcc-8004.4709.1 0.54 -1.8 4,487,620 + Xcc-8004.4709.1 0.54 +1.3 4,487,621 - Xcc-8004.4709.1 0.54 +0.3 4,487,621 - Xcc-8004.4709.1 0.54 -0.1 4,487,752 + Xcc-8004.4709.1 0.69 -1.6 4,487,752 + Xcc-8004.4709.1 0.69 +0.7 4,487,752 + Xcc-8004.4709.1 0.69 +0.4 4,487,752 + Xcc-8004.4709.1 0.69 -0.7 4,487,753 - Xcc-8004.4709.1 0.69 +1.7 4,487,753 - Xcc-8004.4709.1 0.69 -1.6 4,487,753 - Xcc-8004.4709.1 0.69 -0.2 4,487,753 - Xcc-8004.4709.1 0.69 -1.7 4,487,890 + Xcc-8004.4709.1 0.84 +0.3 4,487,890 + Xcc-8004.4709.1 0.84 -2.1 4,487,890 + Xcc-8004.4709.1 0.84 +1.1 4,487,950 + -2.3 4,487,960 - -0.2 4,488,340 + Xcc-8004.4710.1 0.35 +1.0 4,488,340 + Xcc-8004.4710.1 0.35 +0.3 4,488,390 + Xcc-8004.4710.1 0.48 +2.2 4,488,391 - Xcc-8004.4710.1 0.48 -1.3 4,488,391 - Xcc-8004.4710.1 0.48 +2.1 4,488,391 - Xcc-8004.4710.1 0.48 -1.2 4,488,437 - Xcc-8004.4710.1 0.60 -1.8 4,488,437 - Xcc-8004.4710.1 0.60 -1.2 4,488,437 - Xcc-8004.4710.1 0.60 -1.3 4,488,437 - Xcc-8004.4710.1 0.60 -1.2 4,488,715 - Xcc-8004.4711.1 0.22 +0.3
Or see this region's nucleotide sequence