Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3783.1 and Xcc-8004.3784.1 are separated by 30 nucleotides Xcc-8004.3784.1 and Xcc-8004.3785.1 overlap by 4 nucleotides Xcc-8004.3785.1 and Xcc-8004.3786.1 overlap by 4 nucleotides
Xcc-8004.3783.1: Xcc-8004.3783.1 - Two-component system sensor protein, at 3,656,814 to 3,658,103
Xcc-8004.3783.1
Xcc-8004.3784.1: Xcc-8004.3784.1 - Signal transduction histidine kinase, at 3,658,134 to 3,661,274
Xcc-8004.3784.1
Xcc-8004.3785.1: Xcc-8004.3785.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,661,271 to 3,662,095
Xcc-8004.3785.1
Xcc-8004.3786.1: Xcc-8004.3786.1 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 3,662,092 to 3,662,679
Xcc-8004.3786.1
Position (kb) 3658
3659
3660
3661
3662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3657.198 kb on + strand, within Xcc-8004.3783.1 at 3657.198 kb on + strand, within Xcc-8004.3783.1 at 3657.199 kb on - strand, within Xcc-8004.3783.1 at 3657.199 kb on - strand, within Xcc-8004.3783.1 at 3657.775 kb on + strand, within Xcc-8004.3783.1 at 3657.775 kb on + strand, within Xcc-8004.3783.1 at 3657.775 kb on + strand, within Xcc-8004.3783.1 at 3657.775 kb on + strand, within Xcc-8004.3783.1 at 3657.775 kb on + strand, within Xcc-8004.3783.1 at 3657.776 kb on - strand, within Xcc-8004.3783.1 at 3657.776 kb on - strand, within Xcc-8004.3783.1 at 3657.776 kb on - strand, within Xcc-8004.3783.1 at 3657.776 kb on - strand, within Xcc-8004.3783.1 at 3657.817 kb on + strand, within Xcc-8004.3783.1 at 3657.818 kb on - strand, within Xcc-8004.3783.1 at 3657.818 kb on - strand, within Xcc-8004.3783.1 at 3657.851 kb on + strand, within Xcc-8004.3783.1 at 3657.851 kb on + strand, within Xcc-8004.3783.1 at 3657.852 kb on - strand, within Xcc-8004.3783.1 at 3657.880 kb on + strand, within Xcc-8004.3783.1 at 3657.880 kb on + strand, within Xcc-8004.3783.1 at 3657.880 kb on + strand, within Xcc-8004.3783.1 at 3657.934 kb on + strand, within Xcc-8004.3783.1 at 3657.934 kb on + strand, within Xcc-8004.3783.1 at 3658.011 kb on - strand at 3658.011 kb on - strand at 3658.011 kb on - strand at 3658.054 kb on - strand at 3658.233 kb on + strand at 3658.251 kb on + strand at 3658.251 kb on + strand at 3658.251 kb on + strand at 3658.251 kb on + strand at 3658.251 kb on + strand at 3658.252 kb on - strand at 3658.252 kb on - strand at 3658.252 kb on - strand at 3658.252 kb on - strand at 3658.252 kb on - strand at 3658.252 kb on - strand at 3658.516 kb on + strand, within Xcc-8004.3784.1 at 3658.602 kb on + strand, within Xcc-8004.3784.1 at 3658.602 kb on + strand, within Xcc-8004.3784.1 at 3658.660 kb on + strand, within Xcc-8004.3784.1 at 3658.660 kb on + strand, within Xcc-8004.3784.1 at 3658.660 kb on + strand, within Xcc-8004.3784.1 at 3658.660 kb on + strand, within Xcc-8004.3784.1 at 3658.660 kb on + strand, within Xcc-8004.3784.1 at 3658.661 kb on - strand, within Xcc-8004.3784.1 at 3658.661 kb on - strand, within Xcc-8004.3784.1 at 3658.661 kb on - strand, within Xcc-8004.3784.1 at 3658.661 kb on - strand, within Xcc-8004.3784.1 at 3658.661 kb on - strand, within Xcc-8004.3784.1 at 3659.227 kb on - strand, within Xcc-8004.3784.1 at 3659.350 kb on - strand, within Xcc-8004.3784.1 at 3659.784 kb on + strand, within Xcc-8004.3784.1 at 3660.031 kb on + strand, within Xcc-8004.3784.1 at 3660.394 kb on - strand, within Xcc-8004.3784.1 at 3661.207 kb on - strand at 3661.207 kb on - strand at 3661.207 kb on - strand at 3661.566 kb on - strand, within Xcc-8004.3785.1 at 3661.722 kb on - strand, within Xcc-8004.3785.1 at 3661.758 kb on - strand, within Xcc-8004.3785.1 at 3661.758 kb on - strand, within Xcc-8004.3785.1 at 3661.847 kb on - strand, within Xcc-8004.3785.1 at 3661.929 kb on - strand, within Xcc-8004.3785.1 at 3661.929 kb on - strand, within Xcc-8004.3785.1 at 3661.971 kb on - strand, within Xcc-8004.3785.1 at 3662.113 kb on + strand at 3662.114 kb on - strand at 3662.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 3,657,198 + Xcc-8004.3783.1 0.30 -1.2 3,657,198 + Xcc-8004.3783.1 0.30 -0.4 3,657,199 - Xcc-8004.3783.1 0.30 -0.6 3,657,199 - Xcc-8004.3783.1 0.30 -0.9 3,657,775 + Xcc-8004.3783.1 0.74 -2.4 3,657,775 + Xcc-8004.3783.1 0.74 -0.4 3,657,775 + Xcc-8004.3783.1 0.74 -2.4 3,657,775 + Xcc-8004.3783.1 0.74 -1.5 3,657,775 + Xcc-8004.3783.1 0.74 -0.6 3,657,776 - Xcc-8004.3783.1 0.75 -1.3 3,657,776 - Xcc-8004.3783.1 0.75 -0.4 3,657,776 - Xcc-8004.3783.1 0.75 -2.1 3,657,776 - Xcc-8004.3783.1 0.75 +1.1 3,657,817 + Xcc-8004.3783.1 0.78 -1.6 3,657,818 - Xcc-8004.3783.1 0.78 -2.5 3,657,818 - Xcc-8004.3783.1 0.78 -2.3 3,657,851 + Xcc-8004.3783.1 0.80 -2.8 3,657,851 + Xcc-8004.3783.1 0.80 -1.1 3,657,852 - Xcc-8004.3783.1 0.80 -0.3 3,657,880 + Xcc-8004.3783.1 0.83 -1.6 3,657,880 + Xcc-8004.3783.1 0.83 +0.3 3,657,880 + Xcc-8004.3783.1 0.83 +1.0 3,657,934 + Xcc-8004.3783.1 0.87 +0.2 3,657,934 + Xcc-8004.3783.1 0.87 +0.8 3,658,011 - -3.4 3,658,011 - -1.2 3,658,011 - -0.4 3,658,054 - -1.4 3,658,233 + -1.4 3,658,251 + -0.2 3,658,251 + -1.3 3,658,251 + +0.6 3,658,251 + -0.7 3,658,251 + +1.0 3,658,252 - -0.3 3,658,252 - +0.9 3,658,252 - +0.8 3,658,252 - -1.6 3,658,252 - +2.2 3,658,252 - +0.5 3,658,516 + Xcc-8004.3784.1 0.12 +0.1 3,658,602 + Xcc-8004.3784.1 0.15 +2.6 3,658,602 + Xcc-8004.3784.1 0.15 +1.6 3,658,660 + Xcc-8004.3784.1 0.17 -0.2 3,658,660 + Xcc-8004.3784.1 0.17 +0.8 3,658,660 + Xcc-8004.3784.1 0.17 +2.6 3,658,660 + Xcc-8004.3784.1 0.17 -1.9 3,658,660 + Xcc-8004.3784.1 0.17 +0.0 3,658,661 - Xcc-8004.3784.1 0.17 -0.5 3,658,661 - Xcc-8004.3784.1 0.17 -1.8 3,658,661 - Xcc-8004.3784.1 0.17 -1.3 3,658,661 - Xcc-8004.3784.1 0.17 +0.3 3,658,661 - Xcc-8004.3784.1 0.17 +0.2 3,659,227 - Xcc-8004.3784.1 0.35 +1.1 3,659,350 - Xcc-8004.3784.1 0.39 +0.9 3,659,784 + Xcc-8004.3784.1 0.53 -0.9 3,660,031 + Xcc-8004.3784.1 0.60 -0.6 3,660,394 - Xcc-8004.3784.1 0.72 +1.0 3,661,207 - -0.5 3,661,207 - -0.6 3,661,207 - +0.6 3,661,566 - Xcc-8004.3785.1 0.36 -0.3 3,661,722 - Xcc-8004.3785.1 0.55 -0.2 3,661,758 - Xcc-8004.3785.1 0.59 +1.5 3,661,758 - Xcc-8004.3785.1 0.59 -1.2 3,661,847 - Xcc-8004.3785.1 0.70 -0.8 3,661,929 - Xcc-8004.3785.1 0.80 +1.5 3,661,929 - Xcc-8004.3785.1 0.80 -1.3 3,661,971 - Xcc-8004.3785.1 0.85 +0.4 3,662,113 + -0.6 3,662,114 - +1.0 3,662,114 - -0.8
Or see this region's nucleotide sequence