Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3513.1 and Xcc-8004.3514.1 are separated by 38 nucleotides Xcc-8004.3514.1 and Xcc-8004.3515.1 are separated by 56 nucleotides Xcc-8004.3515.1 and Xcc-8004.3516.1 are separated by 207 nucleotides Xcc-8004.3516.1 and Xcc-8004.3517.1 are separated by 7 nucleotides
Xcc-8004.3513.1: Xcc-8004.3513.1 - FIG01211421: hypothetical protein, at 3,400,095 to 3,400,931
Xcc-8004.3513.1
Xcc-8004.3514.1: Xcc-8004.3514.1 - FIG01211598: hypothetical protein, at 3,400,970 to 3,401,413
Xcc-8004.3514.1
Xcc-8004.3515.1: Xcc-8004.3515.1 - putative; ORF located using Glimmer/Genemark, at 3,401,470 to 3,401,670
Xcc-8004.3515.1
Xcc-8004.3516.1: Xcc-8004.3516.1 - GlpG protein (membrane protein of glp regulon), at 3,401,878 to 3,402,486
Xcc-8004.3516.1
Xcc-8004.3517.1: Xcc-8004.3517.1 - Oligopeptide transporter, at 3,402,494 to 3,404,356
Xcc-8004.3517.1
Position (kb) 3401
3402
3403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3400.914 kb on + strand at 3400.914 kb on + strand at 3400.914 kb on + strand at 3400.914 kb on + strand at 3400.914 kb on + strand at 3400.914 kb on + strand at 3400.914 kb on + strand at 3400.914 kb on + strand at 3400.915 kb on - strand at 3400.915 kb on - strand at 3400.915 kb on - strand at 3400.915 kb on - strand at 3400.915 kb on - strand at 3400.915 kb on - strand at 3400.939 kb on + strand at 3400.939 kb on + strand at 3400.939 kb on + strand at 3400.939 kb on + strand at 3400.939 kb on + strand at 3400.940 kb on - strand at 3400.940 kb on - strand at 3400.940 kb on - strand at 3400.940 kb on - strand at 3400.940 kb on - strand at 3400.940 kb on - strand at 3400.940 kb on - strand at 3401.010 kb on + strand at 3401.010 kb on + strand at 3401.010 kb on + strand at 3401.010 kb on + strand at 3401.011 kb on - strand at 3401.011 kb on - strand at 3401.011 kb on - strand at 3401.011 kb on - strand at 3401.011 kb on - strand at 3401.011 kb on - strand at 3401.022 kb on + strand, within Xcc-8004.3514.1 at 3401.022 kb on + strand, within Xcc-8004.3514.1 at 3401.022 kb on + strand, within Xcc-8004.3514.1 at 3401.023 kb on - strand, within Xcc-8004.3514.1 at 3401.023 kb on - strand, within Xcc-8004.3514.1 at 3401.023 kb on - strand, within Xcc-8004.3514.1 at 3401.023 kb on - strand, within Xcc-8004.3514.1 at 3401.023 kb on - strand, within Xcc-8004.3514.1 at 3401.273 kb on + strand, within Xcc-8004.3514.1 at 3401.274 kb on - strand, within Xcc-8004.3514.1 at 3401.450 kb on + strand at 3401.450 kb on + strand at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.508 kb on + strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.509 kb on - strand, within Xcc-8004.3515.1 at 3401.593 kb on + strand, within Xcc-8004.3515.1 at 3401.594 kb on - strand, within Xcc-8004.3515.1 at 3401.614 kb on + strand, within Xcc-8004.3515.1 at 3401.614 kb on + strand, within Xcc-8004.3515.1 at 3401.723 kb on - strand at 3401.723 kb on - strand at 3401.723 kb on - strand at 3401.774 kb on + strand at 3401.774 kb on + strand at 3401.774 kb on + strand at 3401.775 kb on - strand at 3401.775 kb on - strand at 3402.038 kb on + strand, within Xcc-8004.3516.1 at 3402.038 kb on + strand, within Xcc-8004.3516.1 at 3402.038 kb on + strand, within Xcc-8004.3516.1 at 3402.039 kb on - strand, within Xcc-8004.3516.1 at 3402.039 kb on - strand, within Xcc-8004.3516.1 at 3402.039 kb on - strand, within Xcc-8004.3516.1 at 3402.039 kb on - strand, within Xcc-8004.3516.1 at 3402.050 kb on + strand, within Xcc-8004.3516.1 at 3402.050 kb on + strand, within Xcc-8004.3516.1 at 3402.050 kb on + strand, within Xcc-8004.3516.1 at 3402.050 kb on + strand, within Xcc-8004.3516.1 at 3402.050 kb on + strand, within Xcc-8004.3516.1 at 3402.050 kb on + strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.051 kb on - strand, within Xcc-8004.3516.1 at 3402.161 kb on + strand, within Xcc-8004.3516.1 at 3402.161 kb on + strand, within Xcc-8004.3516.1 at 3402.161 kb on + strand, within Xcc-8004.3516.1 at 3402.162 kb on - strand, within Xcc-8004.3516.1 at 3402.188 kb on + strand, within Xcc-8004.3516.1 at 3402.188 kb on + strand, within Xcc-8004.3516.1 at 3402.188 kb on + strand, within Xcc-8004.3516.1 at 3402.189 kb on - strand, within Xcc-8004.3516.1 at 3402.225 kb on - strand, within Xcc-8004.3516.1 at 3402.225 kb on - strand, within Xcc-8004.3516.1 at 3402.237 kb on - strand, within Xcc-8004.3516.1 at 3402.237 kb on - strand, within Xcc-8004.3516.1 at 3402.281 kb on + strand, within Xcc-8004.3516.1 at 3402.281 kb on + strand, within Xcc-8004.3516.1 at 3402.282 kb on - strand, within Xcc-8004.3516.1 at 3402.282 kb on - strand, within Xcc-8004.3516.1 at 3402.282 kb on - strand, within Xcc-8004.3516.1 at 3402.351 kb on - strand, within Xcc-8004.3516.1 at 3402.351 kb on - strand, within Xcc-8004.3516.1 at 3402.351 kb on - strand, within Xcc-8004.3516.1 at 3402.369 kb on - strand, within Xcc-8004.3516.1 at 3402.369 kb on - strand, within Xcc-8004.3516.1 at 3402.369 kb on - strand, within Xcc-8004.3516.1 at 3402.480 kb on + strand at 3402.481 kb on - strand at 3402.507 kb on + strand at 3402.507 kb on + strand at 3402.507 kb on + strand at 3402.507 kb on + strand at 3402.508 kb on - strand at 3402.508 kb on - strand at 3402.508 kb on - strand at 3402.508 kb on - strand at 3402.508 kb on - strand at 3402.626 kb on - strand at 3402.703 kb on - strand, within Xcc-8004.3517.1 at 3402.751 kb on - strand, within Xcc-8004.3517.1 at 3402.751 kb on - strand, within Xcc-8004.3517.1 at 3402.963 kb on + strand, within Xcc-8004.3517.1 at 3402.964 kb on - strand, within Xcc-8004.3517.1 at 3403.277 kb on + strand, within Xcc-8004.3517.1 at 3403.277 kb on + strand, within Xcc-8004.3517.1 at 3403.277 kb on + strand, within Xcc-8004.3517.1 at 3403.278 kb on - strand, within Xcc-8004.3517.1 at 3403.438 kb on - strand, within Xcc-8004.3517.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 3,400,914 + +0.1 3,400,914 + -0.0 3,400,914 + -2.2 3,400,914 + +0.1 3,400,914 + -2.5 3,400,914 + -1.4 3,400,914 + -0.2 3,400,914 + -0.1 3,400,915 - +1.6 3,400,915 - -0.6 3,400,915 - +1.6 3,400,915 - -0.2 3,400,915 - +1.8 3,400,915 - -0.1 3,400,939 + +0.1 3,400,939 + -0.1 3,400,939 + -0.4 3,400,939 + +0.7 3,400,939 + -1.7 3,400,940 - -1.0 3,400,940 - +1.1 3,400,940 - +0.9 3,400,940 - +0.5 3,400,940 - +2.1 3,400,940 - -0.7 3,400,940 - -2.2 3,401,010 + +1.2 3,401,010 + +0.6 3,401,010 + -2.2 3,401,010 + +1.5 3,401,011 - -0.7 3,401,011 - +0.3 3,401,011 - -1.6 3,401,011 - +0.5 3,401,011 - +0.3 3,401,011 - -0.9 3,401,022 + Xcc-8004.3514.1 0.12 -0.0 3,401,022 + Xcc-8004.3514.1 0.12 -2.0 3,401,022 + Xcc-8004.3514.1 0.12 -0.0 3,401,023 - Xcc-8004.3514.1 0.12 -2.1 3,401,023 - Xcc-8004.3514.1 0.12 +3.7 3,401,023 - Xcc-8004.3514.1 0.12 +4.5 3,401,023 - Xcc-8004.3514.1 0.12 -0.7 3,401,023 - Xcc-8004.3514.1 0.12 +0.5 3,401,273 + Xcc-8004.3514.1 0.68 +3.2 3,401,274 - Xcc-8004.3514.1 0.68 +1.2 3,401,450 + -3.6 3,401,450 + -0.8 3,401,508 + Xcc-8004.3515.1 0.19 -0.4 3,401,508 + Xcc-8004.3515.1 0.19 -0.0 3,401,508 + Xcc-8004.3515.1 0.19 +0.8 3,401,508 + Xcc-8004.3515.1 0.19 +0.4 3,401,508 + Xcc-8004.3515.1 0.19 -1.1 3,401,508 + Xcc-8004.3515.1 0.19 +0.5 3,401,508 + Xcc-8004.3515.1 0.19 +1.8 3,401,508 + Xcc-8004.3515.1 0.19 -2.4 3,401,508 + Xcc-8004.3515.1 0.19 -1.9 3,401,508 + Xcc-8004.3515.1 0.19 +0.3 3,401,509 - Xcc-8004.3515.1 0.19 -0.1 3,401,509 - Xcc-8004.3515.1 0.19 -0.2 3,401,509 - Xcc-8004.3515.1 0.19 -0.4 3,401,509 - Xcc-8004.3515.1 0.19 -0.6 3,401,509 - Xcc-8004.3515.1 0.19 +0.5 3,401,509 - Xcc-8004.3515.1 0.19 -1.0 3,401,509 - Xcc-8004.3515.1 0.19 +0.1 3,401,509 - Xcc-8004.3515.1 0.19 -0.1 3,401,509 - Xcc-8004.3515.1 0.19 +0.1 3,401,593 + Xcc-8004.3515.1 0.61 -1.2 3,401,594 - Xcc-8004.3515.1 0.62 +0.5 3,401,614 + Xcc-8004.3515.1 0.72 -1.4 3,401,614 + Xcc-8004.3515.1 0.72 -3.1 3,401,723 - -0.0 3,401,723 - -0.7 3,401,723 - +0.7 3,401,774 + -0.8 3,401,774 + -0.3 3,401,774 + -1.5 3,401,775 - +2.3 3,401,775 - +2.2 3,402,038 + Xcc-8004.3516.1 0.26 +0.3 3,402,038 + Xcc-8004.3516.1 0.26 -2.1 3,402,038 + Xcc-8004.3516.1 0.26 -1.6 3,402,039 - Xcc-8004.3516.1 0.26 -0.6 3,402,039 - Xcc-8004.3516.1 0.26 -0.7 3,402,039 - Xcc-8004.3516.1 0.26 +1.5 3,402,039 - Xcc-8004.3516.1 0.26 +0.0 3,402,050 + Xcc-8004.3516.1 0.28 +1.4 3,402,050 + Xcc-8004.3516.1 0.28 -0.6 3,402,050 + Xcc-8004.3516.1 0.28 +0.6 3,402,050 + Xcc-8004.3516.1 0.28 -3.0 3,402,050 + Xcc-8004.3516.1 0.28 +0.8 3,402,050 + Xcc-8004.3516.1 0.28 -2.8 3,402,051 - Xcc-8004.3516.1 0.28 +0.2 3,402,051 - Xcc-8004.3516.1 0.28 -1.1 3,402,051 - Xcc-8004.3516.1 0.28 +0.9 3,402,051 - Xcc-8004.3516.1 0.28 -1.2 3,402,051 - Xcc-8004.3516.1 0.28 -0.4 3,402,051 - Xcc-8004.3516.1 0.28 -1.1 3,402,051 - Xcc-8004.3516.1 0.28 -0.3 3,402,051 - Xcc-8004.3516.1 0.28 +0.0 3,402,161 + Xcc-8004.3516.1 0.46 +0.8 3,402,161 + Xcc-8004.3516.1 0.46 -1.6 3,402,161 + Xcc-8004.3516.1 0.46 +0.8 3,402,162 - Xcc-8004.3516.1 0.47 -1.0 3,402,188 + Xcc-8004.3516.1 0.51 -2.6 3,402,188 + Xcc-8004.3516.1 0.51 -1.8 3,402,188 + Xcc-8004.3516.1 0.51 +1.3 3,402,189 - Xcc-8004.3516.1 0.51 -0.3 3,402,225 - Xcc-8004.3516.1 0.57 +0.2 3,402,225 - Xcc-8004.3516.1 0.57 -1.2 3,402,237 - Xcc-8004.3516.1 0.59 -1.5 3,402,237 - Xcc-8004.3516.1 0.59 -1.8 3,402,281 + Xcc-8004.3516.1 0.66 -0.9 3,402,281 + Xcc-8004.3516.1 0.66 +3.3 3,402,282 - Xcc-8004.3516.1 0.66 -0.9 3,402,282 - Xcc-8004.3516.1 0.66 +0.1 3,402,282 - Xcc-8004.3516.1 0.66 -0.7 3,402,351 - Xcc-8004.3516.1 0.78 +0.1 3,402,351 - Xcc-8004.3516.1 0.78 +0.4 3,402,351 - Xcc-8004.3516.1 0.78 -0.3 3,402,369 - Xcc-8004.3516.1 0.81 +0.8 3,402,369 - Xcc-8004.3516.1 0.81 +0.7 3,402,369 - Xcc-8004.3516.1 0.81 -0.8 3,402,480 + -0.3 3,402,481 - +1.4 3,402,507 + -3.6 3,402,507 + -1.8 3,402,507 + -0.4 3,402,507 + -0.7 3,402,508 - -0.9 3,402,508 - -0.3 3,402,508 - +0.5 3,402,508 - -0.9 3,402,508 - -0.3 3,402,626 - +2.3 3,402,703 - Xcc-8004.3517.1 0.11 +1.6 3,402,751 - Xcc-8004.3517.1 0.14 -3.7 3,402,751 - Xcc-8004.3517.1 0.14 -0.2 3,402,963 + Xcc-8004.3517.1 0.25 -1.2 3,402,964 - Xcc-8004.3517.1 0.25 +0.1 3,403,277 + Xcc-8004.3517.1 0.42 -2.2 3,403,277 + Xcc-8004.3517.1 0.42 -1.0 3,403,277 + Xcc-8004.3517.1 0.42 -0.6 3,403,278 - Xcc-8004.3517.1 0.42 -1.1 3,403,438 - Xcc-8004.3517.1 0.51 -1.4
Or see this region's nucleotide sequence