Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.232.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.231.1 and Xcc-8004.232.1 are separated by 15 nucleotidesXcc-8004.232.1 and Xcc-8004.233.1 are separated by 3 nucleotidesXcc-8004.233.1 and Xcc-8004.234.1 overlap by 4 nucleotides Xcc-8004.231.1: Xcc-8004.231.1 - partition protein, at 228,973 to 229,605 Xcc-8004.231.1 Xcc-8004.232.1: Xcc-8004.232.1 - Phosphohistidine phosphatase SixA, at 229,621 to 230,097 Xcc-8004.232.1 Xcc-8004.233.1: Xcc-8004.233.1 - FIG01211637: hypothetical protein, at 230,101 to 230,673 Xcc-8004.233.1 Xcc-8004.234.1: Xcc-8004.234.1 - cardiolipin synthase, at 230,670 to 232,652 Xcc-8004.234.1 Position (kb) 229 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 228.795 kb on + strandat 228.795 kb on + strandat 228.795 kb on + strandat 228.795 kb on + strandat 228.795 kb on + strandat 228.795 kb on + strandat 228.795 kb on + strandat 228.796 kb on - strandat 228.796 kb on - strandat 228.820 kb on + strandat 228.820 kb on + strandat 228.820 kb on + strandat 228.820 kb on + strandat 228.821 kb on - strandat 228.821 kb on - strandat 228.892 kb on + strandat 228.892 kb on + strandat 228.892 kb on + strandat 228.902 kb on - strandat 228.902 kb on - strandat 228.902 kb on - strandat 228.915 kb on + strandat 228.916 kb on - strandat 228.916 kb on - strandat 228.916 kb on - strandat 228.916 kb on - strandat 228.938 kb on + strandat 228.938 kb on + strandat 228.938 kb on + strandat 228.938 kb on + strandat 228.939 kb on - strandat 228.939 kb on - strandat 228.939 kb on - strandat 228.939 kb on - strandat 228.939 kb on - strandat 229.459 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.604 kb on - strandat 229.604 kb on - strandat 229.620 kb on + strandat 229.620 kb on + strandat 229.620 kb on + strandat 229.621 kb on - strandat 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.997 kb on - strand, within Xcc-8004.232.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.398 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.543 kb on - strand, within Xcc-8004.233.1at 230.568 kb on + strand, within Xcc-8004.233.1at 230.568 kb on + strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.982 kb on + strand, within Xcc-8004.234.1at 230.982 kb on + strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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228,795 + +0.8
228,795 + +0.7
228,795 + +1.6
228,795 + -0.3
228,795 + +0.4
228,795 + -1.9
228,795 + -0.1
228,796 - +1.7
228,796 - -0.9
228,820 + +0.6
228,820 + -0.6
228,820 + +0.6
228,820 + -0.3
228,821 - -0.4
228,821 - +1.0
228,892 + +0.2
228,892 + +0.9
228,892 + +2.2
228,902 - +0.5
228,902 - -0.3
228,902 - -2.3
228,915 + -0.4
228,916 - -0.1
228,916 - -1.8
228,916 - -0.4
228,916 - -0.0
228,938 + -0.5
228,938 + -0.1
228,938 + -1.7
228,938 + +1.2
228,939 - +2.2
228,939 - -0.3
228,939 - +0.5
228,939 - +0.5
228,939 - -0.9
229,459 + Xcc-8004.231.1 0.77 -3.9
229,495 + Xcc-8004.231.1 0.82 -0.9
229,495 + Xcc-8004.231.1 0.82 -1.4
229,495 + Xcc-8004.231.1 0.82 -2.1
229,495 + Xcc-8004.231.1 0.82 +0.9
229,495 + Xcc-8004.231.1 0.82 -0.1
229,495 + Xcc-8004.231.1 0.82 -0.2
229,495 + Xcc-8004.231.1 0.82 +1.2
229,495 + Xcc-8004.231.1 0.82 +1.7
229,495 + Xcc-8004.231.1 0.82 -1.0
229,495 + Xcc-8004.231.1 0.82 -2.4
229,495 + Xcc-8004.231.1 0.82 +0.9
229,495 + Xcc-8004.231.1 0.82 +1.2
229,495 + Xcc-8004.231.1 0.82 -1.6
229,495 + Xcc-8004.231.1 0.82 -0.7
229,495 + Xcc-8004.231.1 0.82 +0.4
229,495 + Xcc-8004.231.1 0.82 +1.4
229,495 + Xcc-8004.231.1 0.82 +0.1
229,495 + Xcc-8004.231.1 0.82 -2.2
229,495 + Xcc-8004.231.1 0.82 +1.5
229,496 - Xcc-8004.231.1 0.83 -0.5
229,496 - Xcc-8004.231.1 0.83 -0.4
229,496 - Xcc-8004.231.1 0.83 +1.2
229,496 - Xcc-8004.231.1 0.83 -1.4
229,496 - Xcc-8004.231.1 0.83 +0.6
229,496 - Xcc-8004.231.1 0.83 +0.9
229,496 - Xcc-8004.231.1 0.83 +1.0
229,496 - Xcc-8004.231.1 0.83 -0.4
229,496 - Xcc-8004.231.1 0.83 +0.2
229,496 - Xcc-8004.231.1 0.83 -2.6
229,496 - Xcc-8004.231.1 0.83 -1.1
229,496 - Xcc-8004.231.1 0.83 -0.1
229,496 - Xcc-8004.231.1 0.83 -1.4
229,496 - Xcc-8004.231.1 0.83 +1.4
229,496 - Xcc-8004.231.1 0.83 -0.1
229,496 - Xcc-8004.231.1 0.83 -0.5
229,496 - Xcc-8004.231.1 0.83 +0.5
229,603 + +0.8
229,603 + -0.2
229,603 + +0.0
229,603 + +0.2
229,603 + -1.3
229,603 + -1.0
229,604 - +1.0
229,604 - -0.2
229,620 + +1.1
229,620 + -1.5
229,620 + -1.0
229,621 - +0.8
229,864 + Xcc-8004.232.1 0.51 +1.1
229,864 + Xcc-8004.232.1 0.51 -1.3
229,864 + Xcc-8004.232.1 0.51 +1.1
229,864 + Xcc-8004.232.1 0.51 +2.1
229,864 + Xcc-8004.232.1 0.51 +2.4
229,864 + Xcc-8004.232.1 0.51 +0.3
229,865 - Xcc-8004.232.1 0.51 +1.8
229,865 - Xcc-8004.232.1 0.51 -1.0
229,865 - Xcc-8004.232.1 0.51 +1.6
229,865 - Xcc-8004.232.1 0.51 -0.7
229,865 - Xcc-8004.232.1 0.51 -1.1
229,865 - Xcc-8004.232.1 0.51 +0.2
229,865 - Xcc-8004.232.1 0.51 -0.6
229,865 - Xcc-8004.232.1 0.51 +0.4
229,865 - Xcc-8004.232.1 0.51 -0.5
229,865 - Xcc-8004.232.1 0.51 -1.0
229,865 - Xcc-8004.232.1 0.51 +2.5
229,996 + Xcc-8004.232.1 0.79 +1.8
229,996 + Xcc-8004.232.1 0.79 +0.5
229,996 + Xcc-8004.232.1 0.79 +1.7
229,997 - Xcc-8004.232.1 0.79 -2.6
230,353 + Xcc-8004.233.1 0.44 +1.0
230,353 + Xcc-8004.233.1 0.44 -2.5
230,353 + Xcc-8004.233.1 0.44 -1.0
230,354 - Xcc-8004.233.1 0.44 +0.5
230,354 - Xcc-8004.233.1 0.44 -0.1
230,354 - Xcc-8004.233.1 0.44 +1.0
230,398 + Xcc-8004.233.1 0.52 +1.9
230,542 + Xcc-8004.233.1 0.77 +1.0
230,542 + Xcc-8004.233.1 0.77 +0.7
230,542 + Xcc-8004.233.1 0.77 +0.3
230,542 + Xcc-8004.233.1 0.77 +0.6
230,543 - Xcc-8004.233.1 0.77 -1.6
230,568 + Xcc-8004.233.1 0.82 +1.6
230,568 + Xcc-8004.233.1 0.82 -1.3
230,569 - Xcc-8004.233.1 0.82 +1.2
230,569 - Xcc-8004.233.1 0.82 +1.3
230,569 - Xcc-8004.233.1 0.82 -0.9
230,569 - Xcc-8004.233.1 0.82 -1.4
230,569 - Xcc-8004.233.1 0.82 -1.3
230,569 - Xcc-8004.233.1 0.82 -0.1
230,569 - Xcc-8004.233.1 0.82 +0.8
230,982 + Xcc-8004.234.1 0.16 +0.3
230,982 + Xcc-8004.234.1 0.16 -1.2
230,983 - Xcc-8004.234.1 0.16 -0.4
230,983 - Xcc-8004.234.1 0.16 -2.4
230,983 - Xcc-8004.234.1 0.16 -0.2
230,983 - Xcc-8004.234.1 0.16 +2.2
230,983 - Xcc-8004.234.1 0.16 +1.4
230,983 - Xcc-8004.234.1 0.16 -1.3
230,983 - Xcc-8004.234.1 0.16 +0.9

Or see this region's nucleotide sequence