Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2224.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
2,173,549	+		Xcc-8004.2223.1	0.69	+0.2
2,173,550	-		Xcc-8004.2223.1	0.69	+0.3
2,173,639	+		Xcc-8004.2223.1	0.78	-0.6
2,173,639	+		Xcc-8004.2223.1	0.78	-3.1
2,173,640	-		Xcc-8004.2223.1	0.78	-0.4
2,173,640	-		Xcc-8004.2223.1	0.78	+0.3
2,173,640	-		Xcc-8004.2223.1	0.78	-0.3
2,173,640	-		Xcc-8004.2223.1	0.78	-0.7
2,173,641	+		Xcc-8004.2223.1	0.78	-0.1
2,173,641	+		Xcc-8004.2223.1	0.78	-0.2
2,173,641	+		Xcc-8004.2223.1	0.78	-0.5
2,173,642	-		Xcc-8004.2223.1	0.79	-0.4
2,173,873	+				+1.6
2,173,949	+				-1.3
2,173,949	+				+0.6
2,173,949	+				+0.2
2,173,949	+				+0.7
2,173,949	+				-2.0
2,173,949	+				+1.3
2,173,949	+				-2.0
2,173,950	-				-0.0
2,173,950	-				-1.9
2,173,950	-				-0.4
2,173,950	-				-0.4
2,173,950	-				-1.2
2,173,950	-				-1.0
2,173,950	-				+0.8
2,173,950	-				-0.2
2,173,999	-				+0.1
2,174,016	-				+1.3
2,174,031	+				-0.1
2,174,053	+				-0.2
2,174,053	+				-0.3
2,174,053	+				+2.8
2,174,054	-				+3.0
2,174,054	-				-0.6
2,174,129	+				-1.0
2,174,129	+				+0.7
2,174,130	-				+0.1
2,174,146	-				-0.2
2,174,244	+				-1.1
2,174,244	+				-1.2
2,174,244	+				-0.9
2,174,244	+				-0.2
2,174,244	+				+0.2
2,174,244	+				+1.8
2,174,244	+				-0.5
2,174,245	-				+0.8
2,174,245	-				-1.0
2,174,267	+				+2.4
2,174,302	-				-0.7
2,174,376	+				-0.2
2,174,377	-				-0.7
2,174,377	-				+1.4
2,174,377	-				+0.9
2,174,377	-				-1.5
2,174,377	-				+1.0
2,174,377	-				+0.8
2,174,377	-				+1.3
2,174,752	+		Xcc-8004.2224.1	0.16	+1.9
2,174,753	-		Xcc-8004.2224.1	0.16	+0.6
2,174,753	-		Xcc-8004.2224.1	0.16	-0.7
2,174,848	+		Xcc-8004.2224.1	0.23	+0.9
2,174,848	+		Xcc-8004.2224.1	0.23	+0.9
2,174,848	+		Xcc-8004.2224.1	0.23	-1.1
2,174,848	+		Xcc-8004.2224.1	0.23	-1.5
2,174,849	-		Xcc-8004.2224.1	0.23	+0.1
2,175,015	+		Xcc-8004.2224.1	0.34	+1.1
2,175,015	+		Xcc-8004.2224.1	0.34	+1.3
2,175,016	-		Xcc-8004.2224.1	0.34	+0.4
2,175,075	+		Xcc-8004.2224.1	0.38	+0.7
2,175,075	+		Xcc-8004.2224.1	0.38	-0.4
2,175,076	-		Xcc-8004.2224.1	0.38	+0.1
2,175,076	-		Xcc-8004.2224.1	0.38	+1.2
2,175,076	-		Xcc-8004.2224.1	0.38	-0.2
2,175,148	+		Xcc-8004.2224.1	0.43	+0.1
2,175,148	+		Xcc-8004.2224.1	0.43	+0.8
2,175,188	-		Xcc-8004.2224.1	0.46	-0.2
2,175,214	-		Xcc-8004.2224.1	0.48	-1.5
2,175,214	-		Xcc-8004.2224.1	0.48	+0.8
2,175,244	-		Xcc-8004.2224.1	0.50	+0.7
2,175,256	-		Xcc-8004.2224.1	0.51	-0.3
2,175,367	+		Xcc-8004.2224.1	0.58	-1.5
2,175,367	+		Xcc-8004.2224.1	0.58	+0.3
2,175,367	+		Xcc-8004.2224.1	0.58	+0.1
2,175,367	+		Xcc-8004.2224.1	0.58	+1.8
2,175,367	+		Xcc-8004.2224.1	0.58	+0.9
2,175,367	+		Xcc-8004.2224.1	0.58	+0.9
2,175,367	+		Xcc-8004.2224.1	0.58	+1.0
2,175,367	+		Xcc-8004.2224.1	0.58	-1.5
2,175,367	+		Xcc-8004.2224.1	0.58	+1.9
2,175,367	+		Xcc-8004.2224.1	0.58	+1.0
2,175,367	+		Xcc-8004.2224.1	0.58	+1.7
2,175,367	+		Xcc-8004.2224.1	0.58	+0.7
2,175,367	+		Xcc-8004.2224.1	0.58	-0.1
2,175,367	+		Xcc-8004.2224.1	0.58	-1.9
2,175,367	+		Xcc-8004.2224.1	0.58	+0.2
2,175,368	-		Xcc-8004.2224.1	0.58	+1.7
2,175,368	-		Xcc-8004.2224.1	0.58	-0.0
2,175,368	-		Xcc-8004.2224.1	0.58	-1.0
2,175,368	-		Xcc-8004.2224.1	0.58	-1.4
2,175,368	-		Xcc-8004.2224.1	0.58	-2.5
2,175,368	-		Xcc-8004.2224.1	0.58	-2.1
2,175,368	-		Xcc-8004.2224.1	0.58	+1.1
2,175,368	-		Xcc-8004.2224.1	0.58	-1.2
2,175,368	-		Xcc-8004.2224.1	0.58	-1.1
2,175,369	+		Xcc-8004.2224.1	0.59	-1.1
2,175,370	-		Xcc-8004.2224.1	0.59	-1.2
2,175,370	-		Xcc-8004.2224.1	0.59	+3.4
2,175,370	-		Xcc-8004.2224.1	0.59	-1.7
2,175,370	-		Xcc-8004.2224.1	0.59	+0.7
2,175,370	-		Xcc-8004.2224.1	0.59	-0.5
2,175,393	+		Xcc-8004.2224.1	0.60	+1.1
2,175,393	+		Xcc-8004.2224.1	0.60	+2.2
2,175,394	-		Xcc-8004.2224.1	0.60	-1.6
2,175,394	-		Xcc-8004.2224.1	0.60	-0.1
2,175,394	-		Xcc-8004.2224.1	0.60	-0.5
2,175,394	-		Xcc-8004.2224.1	0.60	-1.9
2,175,579	+		Xcc-8004.2224.1	0.73	+0.4
2,175,580	-		Xcc-8004.2224.1	0.73	-0.3
2,175,580	-		Xcc-8004.2224.1	0.73	-1.5
2,175,822	+		Xcc-8004.2224.1	0.90	-0.5
2,175,822	+		Xcc-8004.2224.1	0.90	+1.2
2,175,822	+		Xcc-8004.2224.1	0.90	+1.2
2,175,855	+				-2.5
2,175,855	+				-1.7
2,175,855	+				+0.1
2,175,855	+				+0.2
2,175,856	-				-1.3
2,175,856	-				+1.1
2,175,856	-				-1.7
2,175,856	-				+0.5
2,175,856	-				-1.1
2,175,856	-				-2.1
2,175,856	-				-0.9
2,175,980	+				-1.6
2,175,981	-				+0.0
2,175,993	+				-0.2
2,175,993	+				-0.3
2,175,994	-				-2.0
2,176,000	+				+1.0
2,176,104	+		Xcc-8004.2225.1	0.10	-0.1
2,176,104	+		Xcc-8004.2225.1	0.10	-0.4
2,176,104	+		Xcc-8004.2225.1	0.10	-0.9
2,176,104	+		Xcc-8004.2225.1	0.10	-0.3
2,176,105	-		Xcc-8004.2225.1	0.11	+0.9
2,176,209	+		Xcc-8004.2225.1	0.27	+0.6
2,176,209	+		Xcc-8004.2225.1	0.27	+0.1
2,176,209	+		Xcc-8004.2225.1	0.27	+0.7
2,176,209	+		Xcc-8004.2225.1	0.27	+0.6
2,176,210	-		Xcc-8004.2225.1	0.28	+2.1
2,176,341	+		Xcc-8004.2225.1	0.49	-0.2
2,176,341	+		Xcc-8004.2225.1	0.49	-0.5
2,176,341	+		Xcc-8004.2225.1	0.49	-0.1
2,176,342	-		Xcc-8004.2225.1	0.49	+0.4
2,176,342	-		Xcc-8004.2225.1	0.49	+0.5
2,176,342	-		Xcc-8004.2225.1	0.49	-1.0
2,176,342	-		Xcc-8004.2225.1	0.49	+0.4
2,176,362	+		Xcc-8004.2225.1	0.52	+1.8
2,176,362	+		Xcc-8004.2225.1	0.52	+1.6
2,176,363	-		Xcc-8004.2225.1	0.53	-0.1
2,176,363	-		Xcc-8004.2225.1	0.53	+1.3
2,176,428	+		Xcc-8004.2225.1	0.63	+1.9
2,176,428	+		Xcc-8004.2225.1	0.63	+0.3
2,176,428	+		Xcc-8004.2225.1	0.63	+0.7
2,176,428	+		Xcc-8004.2225.1	0.63	-0.3
2,176,428	+		Xcc-8004.2225.1	0.63	-0.4
2,176,429	-		Xcc-8004.2225.1	0.63	+1.0
2,176,429	-		Xcc-8004.2225.1	0.63	+0.3
2,176,429	-		Xcc-8004.2225.1	0.63	-1.4
2,176,434	+		Xcc-8004.2225.1	0.64	+1.8
2,176,434	+		Xcc-8004.2225.1	0.64	-0.0
2,176,434	+		Xcc-8004.2225.1	0.64	+0.2
2,176,434	+		Xcc-8004.2225.1	0.64	+0.5
2,176,434	+		Xcc-8004.2225.1	0.64	-1.7
2,176,434	+		Xcc-8004.2225.1	0.64	+0.1
2,176,434	+		Xcc-8004.2225.1	0.64	-2.1
2,176,434	+		Xcc-8004.2225.1	0.64	+0.5
2,176,434	+		Xcc-8004.2225.1	0.64	+0.4
2,176,434	+		Xcc-8004.2225.1	0.64	-1.7
2,176,434	+		Xcc-8004.2225.1	0.64	+0.1
2,176,434	+		Xcc-8004.2225.1	0.64	+1.8
2,176,434	+		Xcc-8004.2225.1	0.64	+0.3
2,176,434	+		Xcc-8004.2225.1	0.64	-1.4
2,176,434	+		Xcc-8004.2225.1	0.64	-1.7
2,176,434	+		Xcc-8004.2225.1	0.64	-0.5
2,176,435	-		Xcc-8004.2225.1	0.64	-0.3
2,176,435	-		Xcc-8004.2225.1	0.64	-1.4
2,176,435	-		Xcc-8004.2225.1	0.64	-0.1
2,176,435	-		Xcc-8004.2225.1	0.64	-0.2
2,176,435	-		Xcc-8004.2225.1	0.64	-1.6
2,176,435	-		Xcc-8004.2225.1	0.64	-0.4
2,176,435	-		Xcc-8004.2225.1	0.64	-1.1
2,176,564	-		Xcc-8004.2225.1	0.85	+0.5
2,176,564	-		Xcc-8004.2225.1	0.85	-3.6
2,176,564	-		Xcc-8004.2225.1	0.85	+0.3
2,176,564	-		Xcc-8004.2225.1	0.85	-1.3
2,176,564	-		Xcc-8004.2225.1	0.85	+0.7
2,176,648	+				+0.2
2,176,648	+				+0.4
2,176,648	+				-0.1
2,176,648	+				-0.3
2,176,648	+				-0.1
2,176,649	-				-0.7
2,176,649	-				+0.6
2,176,649	-				+0.1
2,176,694	+				+0.4
2,176,694	+				-0.7
2,176,694	+				-0.0
2,176,694	+				+1.2
2,176,694	+				-3.8
2,176,695	-				+0.7
2,176,695	-				-1.9
2,176,695	-				+1.5
2,176,695	-				-0.5
2,176,695	-				+0.6
2,176,701	+				+0.9
2,176,701	+				+0.5
2,176,702	-				-0.2
2,176,702	-				+0.5
2,176,702	-				+0.6
2,176,727	+				+2.1
2,176,728	-				-0.5
2,176,728	-				+1.5
2,176,728	-				+0.1
2,176,728	-				+1.7
2,176,728	-				-1.8
2,176,858	+				-0.8