Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.154.1 and Xcc-8004.155.1 are separated by 194 nucleotides Xcc-8004.155.1 and Xcc-8004.156.1 are separated by 73 nucleotides
Xcc-8004.154.1: Xcc-8004.154.1 - Short-chain alcohol dehydrogenase family, at 142,456 to 143,664
Xcc-8004.154.1
Xcc-8004.155.1: Xcc-8004.155.1 - FIG01210803: hypothetical protein, at 143,859 to 144,149
Xcc-8004.155.1
Xcc-8004.156.1: Xcc-8004.156.1 - putative secreted protein, at 144,223 to 145,476
Xcc-8004.156.1
Position (kb) 143
144
145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 143.748 kb on + strand at 143.748 kb on + strand at 143.748 kb on + strand at 143.799 kb on + strand at 143.799 kb on + strand at 143.799 kb on + strand at 143.799 kb on + strand at 143.799 kb on + strand at 143.800 kb on - strand at 143.800 kb on - strand at 143.800 kb on - strand at 143.800 kb on - strand at 143.872 kb on + strand at 143.873 kb on - strand at 144.067 kb on + strand, within Xcc-8004.155.1 at 144.150 kb on + strand at 144.176 kb on + strand at 144.176 kb on + strand at 144.214 kb on - strand at 144.437 kb on + strand, within Xcc-8004.156.1 at 144.438 kb on - strand, within Xcc-8004.156.1 at 144.453 kb on + strand, within Xcc-8004.156.1 at 144.453 kb on + strand, within Xcc-8004.156.1 at 144.453 kb on + strand, within Xcc-8004.156.1 at 144.454 kb on - strand, within Xcc-8004.156.1 at 144.487 kb on + strand, within Xcc-8004.156.1 at 144.488 kb on - strand, within Xcc-8004.156.1 at 144.530 kb on + strand, within Xcc-8004.156.1 at 144.545 kb on + strand, within Xcc-8004.156.1 at 144.546 kb on - strand, within Xcc-8004.156.1 at 144.546 kb on - strand, within Xcc-8004.156.1 at 144.581 kb on + strand, within Xcc-8004.156.1 at 144.581 kb on + strand, within Xcc-8004.156.1 at 144.582 kb on - strand, within Xcc-8004.156.1 at 144.704 kb on + strand, within Xcc-8004.156.1 at 144.704 kb on + strand, within Xcc-8004.156.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 143,748 + +0.0 143,748 + -1.3 143,748 + -2.2 143,799 + +0.6 143,799 + -0.6 143,799 + -0.2 143,799 + +0.0 143,799 + -2.2 143,800 - +1.8 143,800 - +0.0 143,800 - -0.9 143,800 - +0.1 143,872 + +1.5 143,873 - +1.1 144,067 + Xcc-8004.155.1 0.71 -0.5 144,150 + +0.6 144,176 + +1.0 144,176 + -0.5 144,214 - -1.3 144,437 + Xcc-8004.156.1 0.17 -0.4 144,438 - Xcc-8004.156.1 0.17 +0.5 144,453 + Xcc-8004.156.1 0.18 +0.7 144,453 + Xcc-8004.156.1 0.18 -0.1 144,453 + Xcc-8004.156.1 0.18 -0.3 144,454 - Xcc-8004.156.1 0.18 -0.6 144,487 + Xcc-8004.156.1 0.21 +0.6 144,488 - Xcc-8004.156.1 0.21 +0.1 144,530 + Xcc-8004.156.1 0.24 +0.6 144,545 + Xcc-8004.156.1 0.26 +2.0 144,546 - Xcc-8004.156.1 0.26 -1.7 144,546 - Xcc-8004.156.1 0.26 +5.7 144,581 + Xcc-8004.156.1 0.29 -1.6 144,581 + Xcc-8004.156.1 0.29 -0.1 144,582 - Xcc-8004.156.1 0.29 +0.5 144,704 + Xcc-8004.156.1 0.38 -3.4 144,704 + Xcc-8004.156.1 0.38 +0.3
Or see this region's nucleotide sequence