Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.149.1 and Xcc-8004.150.1 are separated by 125 nucleotides Xcc-8004.150.1 and Xcc-8004.151.1 are separated by 209 nucleotides Xcc-8004.151.1 and Xcc-8004.153.1 overlap by 4 nucleotides
Xcc-8004.149.1: Xcc-8004.149.1 - putative; ORF located using Glimmer/Genemark, at 136,736 to 137,467
Xcc-8004.149.1
Xcc-8004.150.1: Xcc-8004.150.1 - FIG01210552: hypothetical protein, at 137,593 to 137,976
Xcc-8004.150.1
Xcc-8004.151.1: Xcc-8004.151.1 - FIG01211308: hypothetical protein, at 138,186 to 138,569
Xcc-8004.151.1
Xcc-8004.153.1: Xcc-8004.153.1 - Transcriptional regulator, at 138,566 to 141,979
Xcc-8004.153.1
Position (kb) 137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 136.710 kb on - strand at 136.736 kb on - strand at 136.736 kb on - strand at 136.736 kb on - strand at 136.799 kb on + strand at 136.799 kb on + strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.934 kb on - strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.955 kb on - strand, within Xcc-8004.149.1 at 136.955 kb on - strand, within Xcc-8004.149.1 at 137.117 kb on + strand, within Xcc-8004.149.1 at 137.118 kb on - strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.331 kb on - strand, within Xcc-8004.149.1 at 137.331 kb on - strand, within Xcc-8004.149.1 at 137.331 kb on - strand, within Xcc-8004.149.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 138.101 kb on + strand at 138.101 kb on + strand at 138.101 kb on + strand at 138.101 kb on + strand at 138.102 kb on - strand at 138.188 kb on - strand at 138.188 kb on - strand at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.338 kb on - strand, within Xcc-8004.151.1 at 138.338 kb on - strand, within Xcc-8004.151.1 at 138.338 kb on - strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.425 kb on - strand, within Xcc-8004.151.1 at 138.425 kb on - strand, within Xcc-8004.151.1 at 138.425 kb on - strand, within Xcc-8004.151.1 at 138.447 kb on + strand, within Xcc-8004.151.1 at 138.448 kb on - strand, within Xcc-8004.151.1 at 138.484 kb on + strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.639 kb on + strand at 138.639 kb on + strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.853 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 136,710 - +1.6 136,736 - +0.9 136,736 - +1.0 136,736 - +0.8 136,799 + -0.2 136,799 + -1.4 136,800 - -1.1 136,800 - -0.7 136,800 - +0.2 136,800 - -0.5 136,800 - -0.7 136,800 - -0.5 136,800 - +2.0 136,800 - -0.4 136,830 + Xcc-8004.149.1 0.13 -0.8 136,830 + Xcc-8004.149.1 0.13 -1.0 136,830 + Xcc-8004.149.1 0.13 +0.3 136,830 + Xcc-8004.149.1 0.13 -0.4 136,830 + Xcc-8004.149.1 0.13 -0.1 136,830 + Xcc-8004.149.1 0.13 -1.2 136,831 - Xcc-8004.149.1 0.13 -1.8 136,831 - Xcc-8004.149.1 0.13 +0.1 136,831 - Xcc-8004.149.1 0.13 +0.1 136,831 - Xcc-8004.149.1 0.13 -0.9 136,831 - Xcc-8004.149.1 0.13 +2.1 136,831 - Xcc-8004.149.1 0.13 -1.2 136,831 - Xcc-8004.149.1 0.13 -0.2 136,831 - Xcc-8004.149.1 0.13 -2.4 136,934 - Xcc-8004.149.1 0.27 -0.1 136,954 + Xcc-8004.149.1 0.30 -3.7 136,954 + Xcc-8004.149.1 0.30 +1.1 136,954 + Xcc-8004.149.1 0.30 -0.5 136,954 + Xcc-8004.149.1 0.30 +2.6 136,955 - Xcc-8004.149.1 0.30 +0.2 136,955 - Xcc-8004.149.1 0.30 +0.1 137,117 + Xcc-8004.149.1 0.52 -0.2 137,118 - Xcc-8004.149.1 0.52 -0.8 137,330 + Xcc-8004.149.1 0.81 +1.8 137,330 + Xcc-8004.149.1 0.81 -0.1 137,330 + Xcc-8004.149.1 0.81 -1.2 137,330 + Xcc-8004.149.1 0.81 +1.5 137,331 - Xcc-8004.149.1 0.81 +0.4 137,331 - Xcc-8004.149.1 0.81 +0.1 137,331 - Xcc-8004.149.1 0.81 +0.3 137,703 + Xcc-8004.150.1 0.29 -0.6 137,703 + Xcc-8004.150.1 0.29 -1.8 137,703 + Xcc-8004.150.1 0.29 -1.4 137,703 + Xcc-8004.150.1 0.29 -2.2 137,703 + Xcc-8004.150.1 0.29 +0.8 137,703 + Xcc-8004.150.1 0.29 -0.3 137,703 + Xcc-8004.150.1 0.29 -1.3 137,703 + Xcc-8004.150.1 0.29 -1.4 137,703 + Xcc-8004.150.1 0.29 +1.3 137,703 + Xcc-8004.150.1 0.29 -0.4 137,703 + Xcc-8004.150.1 0.29 -0.6 137,704 - Xcc-8004.150.1 0.29 +0.6 137,704 - Xcc-8004.150.1 0.29 -2.9 137,704 - Xcc-8004.150.1 0.29 -0.5 137,704 - Xcc-8004.150.1 0.29 -2.2 137,704 - Xcc-8004.150.1 0.29 +0.8 137,704 - Xcc-8004.150.1 0.29 -1.8 137,704 - Xcc-8004.150.1 0.29 -1.2 137,704 - Xcc-8004.150.1 0.29 +3.3 137,704 - Xcc-8004.150.1 0.29 +0.2 137,704 - Xcc-8004.150.1 0.29 -1.8 137,704 - Xcc-8004.150.1 0.29 +1.6 138,101 + -1.8 138,101 + -0.2 138,101 + +0.4 138,101 + +1.1 138,102 - +1.3 138,188 - +0.9 138,188 - -0.4 138,337 + Xcc-8004.151.1 0.39 -0.4 138,337 + Xcc-8004.151.1 0.39 -0.0 138,337 + Xcc-8004.151.1 0.39 -2.2 138,337 + Xcc-8004.151.1 0.39 +0.4 138,337 + Xcc-8004.151.1 0.39 -1.2 138,337 + Xcc-8004.151.1 0.39 -0.0 138,337 + Xcc-8004.151.1 0.39 -0.4 138,338 - Xcc-8004.151.1 0.40 +0.7 138,338 - Xcc-8004.151.1 0.40 +1.3 138,338 - Xcc-8004.151.1 0.40 +1.0 138,424 + Xcc-8004.151.1 0.62 -1.9 138,424 + Xcc-8004.151.1 0.62 -1.5 138,424 + Xcc-8004.151.1 0.62 -0.5 138,424 + Xcc-8004.151.1 0.62 -1.2 138,424 + Xcc-8004.151.1 0.62 +0.3 138,425 - Xcc-8004.151.1 0.62 -2.5 138,425 - Xcc-8004.151.1 0.62 -1.4 138,425 - Xcc-8004.151.1 0.62 +0.9 138,447 + Xcc-8004.151.1 0.68 -2.6 138,448 - Xcc-8004.151.1 0.68 +1.6 138,484 + Xcc-8004.151.1 0.78 +0.9 138,485 - Xcc-8004.151.1 0.78 -0.2 138,485 - Xcc-8004.151.1 0.78 +1.0 138,485 - Xcc-8004.151.1 0.78 -0.4 138,485 - Xcc-8004.151.1 0.78 -2.9 138,485 - Xcc-8004.151.1 0.78 -1.4 138,485 - Xcc-8004.151.1 0.78 -1.5 138,490 + Xcc-8004.151.1 0.79 -1.5 138,490 + Xcc-8004.151.1 0.79 +1.5 138,490 + Xcc-8004.151.1 0.79 -1.0 138,490 + Xcc-8004.151.1 0.79 +1.6 138,490 + Xcc-8004.151.1 0.79 +0.1 138,490 + Xcc-8004.151.1 0.79 +1.1 138,490 + Xcc-8004.151.1 0.79 +1.0 138,490 + Xcc-8004.151.1 0.79 -2.2 138,490 + Xcc-8004.151.1 0.79 -0.2 138,490 + Xcc-8004.151.1 0.79 -1.6 138,490 + Xcc-8004.151.1 0.79 -0.9 138,490 + Xcc-8004.151.1 0.79 +0.0 138,490 + Xcc-8004.151.1 0.79 -1.4 138,490 + Xcc-8004.151.1 0.79 +1.1 138,490 + Xcc-8004.151.1 0.79 -0.1 138,491 - Xcc-8004.151.1 0.79 -0.6 138,491 - Xcc-8004.151.1 0.79 -1.4 138,491 - Xcc-8004.151.1 0.79 +2.3 138,491 - Xcc-8004.151.1 0.79 -2.4 138,491 - Xcc-8004.151.1 0.79 +1.7 138,491 - Xcc-8004.151.1 0.79 -0.0 138,491 - Xcc-8004.151.1 0.79 +0.3 138,491 - Xcc-8004.151.1 0.79 +0.5 138,526 + Xcc-8004.151.1 0.89 +0.9 138,526 + Xcc-8004.151.1 0.89 +0.4 138,526 + Xcc-8004.151.1 0.89 +0.8 138,526 + Xcc-8004.151.1 0.89 +1.2 138,526 + Xcc-8004.151.1 0.89 +0.0 138,526 + Xcc-8004.151.1 0.89 -2.2 138,526 + Xcc-8004.151.1 0.89 -0.2 138,526 + Xcc-8004.151.1 0.89 -0.8 138,526 + Xcc-8004.151.1 0.89 -1.7 138,527 - Xcc-8004.151.1 0.89 -0.5 138,527 - Xcc-8004.151.1 0.89 +0.3 138,527 - Xcc-8004.151.1 0.89 -0.1 138,527 - Xcc-8004.151.1 0.89 +1.3 138,600 + -0.7 138,600 + -2.0 138,600 + -1.3 138,600 + -0.1 138,600 + -0.3 138,600 + -0.1 138,601 - -3.0 138,601 - -1.3 138,601 - +2.2 138,601 - +2.1 138,601 - -0.8 138,601 - -1.5 138,601 - -2.6 138,601 - -2.2 138,639 + -0.7 138,639 + -0.9 138,640 - +1.9 138,640 - +0.5 138,640 - +1.5 138,640 - +0.5 138,640 - +1.8 138,853 + +0.6
Or see this region's nucleotide sequence