Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1180.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1179.1 and Xcc-8004.1180.1 are separated by 309 nucleotidesXcc-8004.1180.1 and Xcc-8004.1181.1 are separated by 238 nucleotides Xcc-8004.1179.1: Xcc-8004.1179.1 - Proline imino-peptidase, at 1,111,774 to 1,113,102 Xcc-8004.1179.1 Xcc-8004.1180.1: Xcc-8004.1180.1 - Transketolase (EC 2.2.1.1), at 1,113,412 to 1,115,412 Xcc-8004.1180.1 Xcc-8004.1181.1: Xcc-8004.1181.1 - Proton/glutamate symport protein @ Sodium/glutamate symport protein, at 1,115,651 to 1,116,931 Xcc-8004.1181.1 Position (kb) 1113 1114 1115 1116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1112.516 kb on + strand, within Xcc-8004.1179.1at 1112.516 kb on + strand, within Xcc-8004.1179.1at 1112.516 kb on + strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.528 kb on - strand, within Xcc-8004.1179.1at 1112.528 kb on - strand, within Xcc-8004.1179.1at 1112.528 kb on - strand, within Xcc-8004.1179.1at 1112.554 kb on + strand, within Xcc-8004.1179.1at 1112.555 kb on - strand, within Xcc-8004.1179.1at 1112.555 kb on - strand, within Xcc-8004.1179.1at 1112.707 kb on + strand, within Xcc-8004.1179.1at 1112.707 kb on + strand, within Xcc-8004.1179.1at 1112.707 kb on + strand, within Xcc-8004.1179.1at 1112.708 kb on - strand, within Xcc-8004.1179.1at 1112.809 kb on + strand, within Xcc-8004.1179.1at 1112.810 kb on - strand, within Xcc-8004.1179.1at 1112.810 kb on - strand, within Xcc-8004.1179.1at 1112.902 kb on + strand, within Xcc-8004.1179.1at 1112.902 kb on + strand, within Xcc-8004.1179.1at 1112.903 kb on - strand, within Xcc-8004.1179.1at 1112.903 kb on - strand, within Xcc-8004.1179.1at 1112.956 kb on + strand, within Xcc-8004.1179.1at 1112.956 kb on + strand, within Xcc-8004.1179.1at 1112.956 kb on + strand, within Xcc-8004.1179.1at 1112.957 kb on - strand, within Xcc-8004.1179.1at 1113.413 kb on + strandat 1113.413 kb on + strandat 1113.414 kb on - strandat 1113.414 kb on - strandat 1113.414 kb on - strandat 1115.421 kb on - strandat 1115.461 kb on - strandat 1115.628 kb on - strandat 1115.652 kb on + strandat 1115.799 kb on - strand, within Xcc-8004.1181.1at 1115.801 kb on + strand, within Xcc-8004.1181.1at 1115.802 kb on - strand, within Xcc-8004.1181.1at 1116.147 kb on + strand, within Xcc-8004.1181.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
1,112,516 + Xcc-8004.1179.1 0.56 +0.5
1,112,516 + Xcc-8004.1179.1 0.56 -2.2
1,112,516 + Xcc-8004.1179.1 0.56 +0.8
1,112,517 - Xcc-8004.1179.1 0.56 +1.4
1,112,517 - Xcc-8004.1179.1 0.56 -1.0
1,112,517 - Xcc-8004.1179.1 0.56 +1.5
1,112,517 - Xcc-8004.1179.1 0.56 +0.5
1,112,517 - Xcc-8004.1179.1 0.56 +0.3
1,112,527 + Xcc-8004.1179.1 0.57 -2.6
1,112,527 + Xcc-8004.1179.1 0.57 -0.0
1,112,527 + Xcc-8004.1179.1 0.57 -1.3
1,112,527 + Xcc-8004.1179.1 0.57 -0.0
1,112,528 - Xcc-8004.1179.1 0.57 -0.4
1,112,528 - Xcc-8004.1179.1 0.57 -0.6
1,112,528 - Xcc-8004.1179.1 0.57 -1.5
1,112,554 + Xcc-8004.1179.1 0.59 -0.4
1,112,555 - Xcc-8004.1179.1 0.59 -0.1
1,112,555 - Xcc-8004.1179.1 0.59 -0.3
1,112,707 + Xcc-8004.1179.1 0.70 -0.1
1,112,707 + Xcc-8004.1179.1 0.70 -0.4
1,112,707 + Xcc-8004.1179.1 0.70 -0.4
1,112,708 - Xcc-8004.1179.1 0.70 -0.4
1,112,809 + Xcc-8004.1179.1 0.78 -1.6
1,112,810 - Xcc-8004.1179.1 0.78 -1.0
1,112,810 - Xcc-8004.1179.1 0.78 -0.9
1,112,902 + Xcc-8004.1179.1 0.85 -3.0
1,112,902 + Xcc-8004.1179.1 0.85 +2.1
1,112,903 - Xcc-8004.1179.1 0.85 +0.3
1,112,903 - Xcc-8004.1179.1 0.85 +0.1
1,112,956 + Xcc-8004.1179.1 0.89 +0.4
1,112,956 + Xcc-8004.1179.1 0.89 -0.6
1,112,956 + Xcc-8004.1179.1 0.89 -1.7
1,112,957 - Xcc-8004.1179.1 0.89 -2.2
1,113,413 + -2.1
1,113,413 + -0.3
1,113,414 - +0.4
1,113,414 - -1.8
1,113,414 - -0.8
1,115,421 - -0.9
1,115,461 - -1.6
1,115,628 - +0.6
1,115,652 + +0.7
1,115,799 - Xcc-8004.1181.1 0.12 -0.5
1,115,801 + Xcc-8004.1181.1 0.12 +1.1
1,115,802 - Xcc-8004.1181.1 0.12 +0.4
1,116,147 + Xcc-8004.1181.1 0.39 +0.1

Or see this region's nucleotide sequence