Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00385 and IAI47_00390 are separated by 82 nucleotides IAI47_00390 and IAI47_00395 are separated by 221 nucleotides IAI47_00395 and IAI47_00400 are separated by 77 nucleotides IAI47_00400 and IAI47_00405 are separated by 85 nucleotides IAI47_00405 and IAI47_00410 are separated by 1 nucleotides
IAI47_00385: IAI47_00385 - 16S ribosomal RNA, at 85,333 to 86,879
_00385
IAI47_00390: IAI47_00390 - tRNA-Glu, at 86,962 to 87,036
_00390
IAI47_00395: IAI47_00395 - 23S ribosomal RNA, at 87,258 to 90,192
_00395
IAI47_00400: IAI47_00400 - 5S ribosomal RNA, at 90,270 to 90,385
_00400
IAI47_00405: IAI47_00405 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 90,471 to 90,977
_00405
IAI47_00410: IAI47_00410 - molybdenum cofactor guanylyltransferase MobA, at 90,979 to 91,545
_00410
Position (kb) 87
88
89
90
91 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 90.430 kb on + strand at 90.430 kb on + strand at 90.464 kb on - strand at 90.512 kb on + strand at 90.513 kb on - strand at 90.513 kb on - strand at 90.513 kb on - strand at 90.525 kb on + strand, within IAI47_00405 at 90.525 kb on + strand, within IAI47_00405 at 90.526 kb on - strand, within IAI47_00405 at 90.526 kb on - strand, within IAI47_00405 at 90.526 kb on - strand, within IAI47_00405 at 90.631 kb on - strand, within IAI47_00405 at 90.641 kb on + strand, within IAI47_00405 at 90.642 kb on - strand, within IAI47_00405 at 90.645 kb on + strand, within IAI47_00405 at 90.645 kb on + strand, within IAI47_00405 at 90.659 kb on + strand, within IAI47_00405 at 90.660 kb on - strand, within IAI47_00405 at 90.660 kb on - strand, within IAI47_00405 at 90.660 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.701 kb on + strand, within IAI47_00405 at 90.701 kb on + strand, within IAI47_00405 at 90.702 kb on - strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.827 kb on + strand, within IAI47_00405 at 90.827 kb on + strand, within IAI47_00405 at 90.828 kb on - strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.867 kb on - strand, within IAI47_00405 at 90.867 kb on - strand, within IAI47_00405 at 90.890 kb on + strand, within IAI47_00405 at 90.890 kb on + strand, within IAI47_00405 at 90.918 kb on + strand, within IAI47_00405 at 90.918 kb on + strand, within IAI47_00405 at 90.932 kb on + strand at 90.933 kb on - strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.964 kb on - strand at 90.964 kb on - strand at 90.964 kb on - strand at 90.970 kb on - strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.009 kb on - strand at 91.011 kb on + strand at 91.011 kb on + strand at 91.011 kb on + strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.014 kb on + strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.048 kb on + strand, within IAI47_00410 at 91.048 kb on + strand, within IAI47_00410 at 91.048 kb on + strand, within IAI47_00410 at 91.049 kb on - strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.109 kb on + strand, within IAI47_00410 at 91.109 kb on + strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.132 kb on - strand, within IAI47_00410
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 remove 90,430 + -3.0 90,430 + +0.8 90,464 - -0.8 90,512 + -0.5 90,513 - -0.8 90,513 - -0.3 90,513 - +0.0 90,525 + IAI47_00405 0.11 -0.2 90,525 + IAI47_00405 0.11 -0.2 90,526 - IAI47_00405 0.11 +1.3 90,526 - IAI47_00405 0.11 -0.3 90,526 - IAI47_00405 0.11 +0.0 90,631 - IAI47_00405 0.32 -0.6 90,641 + IAI47_00405 0.34 -0.3 90,642 - IAI47_00405 0.34 +0.8 90,645 + IAI47_00405 0.34 +0.4 90,645 + IAI47_00405 0.34 -0.6 90,659 + IAI47_00405 0.37 +0.9 90,660 - IAI47_00405 0.37 +0.5 90,660 - IAI47_00405 0.37 +1.5 90,660 - IAI47_00405 0.37 +0.0 90,676 - IAI47_00405 0.40 -0.9 90,676 - IAI47_00405 0.40 +0.9 90,676 - IAI47_00405 0.40 -0.4 90,676 - IAI47_00405 0.40 +0.3 90,676 - IAI47_00405 0.40 +0.1 90,701 + IAI47_00405 0.45 +0.1 90,701 + IAI47_00405 0.45 -0.1 90,702 - IAI47_00405 0.46 -0.6 90,715 + IAI47_00405 0.48 -1.7 90,715 + IAI47_00405 0.48 -0.3 90,715 + IAI47_00405 0.48 -1.1 90,715 + IAI47_00405 0.48 -1.1 90,715 + IAI47_00405 0.48 +0.5 90,716 - IAI47_00405 0.48 +0.2 90,716 - IAI47_00405 0.48 +0.6 90,716 - IAI47_00405 0.48 +0.7 90,716 - IAI47_00405 0.48 -0.4 90,716 - IAI47_00405 0.48 -0.5 90,716 - IAI47_00405 0.48 -2.2 90,716 - IAI47_00405 0.48 -0.3 90,716 - IAI47_00405 0.48 +0.2 90,817 + IAI47_00405 0.68 -0.1 90,817 + IAI47_00405 0.68 +0.6 90,817 + IAI47_00405 0.68 +0.3 90,817 + IAI47_00405 0.68 +0.2 90,817 + IAI47_00405 0.68 +0.5 90,817 + IAI47_00405 0.68 -1.0 90,817 + IAI47_00405 0.68 -0.1 90,817 + IAI47_00405 0.68 +0.3 90,817 + IAI47_00405 0.68 -1.0 90,817 + IAI47_00405 0.68 -2.0 90,817 + IAI47_00405 0.68 -0.9 90,817 + IAI47_00405 0.68 -3.9 90,818 - IAI47_00405 0.68 +0.3 90,818 - IAI47_00405 0.68 -0.7 90,818 - IAI47_00405 0.68 +1.6 90,818 - IAI47_00405 0.68 +0.2 90,818 - IAI47_00405 0.68 +0.5 90,818 - IAI47_00405 0.68 +0.4 90,818 - IAI47_00405 0.68 -0.9 90,818 - IAI47_00405 0.68 -0.3 90,821 + IAI47_00405 0.69 -2.3 90,821 + IAI47_00405 0.69 -0.2 90,821 + IAI47_00405 0.69 -0.5 90,821 + IAI47_00405 0.69 -1.0 90,821 + IAI47_00405 0.69 -0.7 90,821 + IAI47_00405 0.69 -1.5 90,821 + IAI47_00405 0.69 -0.9 90,821 + IAI47_00405 0.69 -0.1 90,821 + IAI47_00405 0.69 -0.9 90,822 - IAI47_00405 0.69 +0.3 90,822 - IAI47_00405 0.69 +0.9 90,822 - IAI47_00405 0.69 +0.6 90,822 - IAI47_00405 0.69 -1.0 90,822 - IAI47_00405 0.69 -0.5 90,822 - IAI47_00405 0.69 -0.5 90,822 - IAI47_00405 0.69 +1.4 90,822 - IAI47_00405 0.69 +0.1 90,822 - IAI47_00405 0.69 -0.4 90,822 - IAI47_00405 0.69 -0.5 90,822 - IAI47_00405 0.69 +0.6 90,822 - IAI47_00405 0.69 -0.1 90,827 + IAI47_00405 0.70 -1.5 90,827 + IAI47_00405 0.70 -0.6 90,828 - IAI47_00405 0.70 +1.5 90,866 + IAI47_00405 0.78 +0.7 90,866 + IAI47_00405 0.78 -0.2 90,866 + IAI47_00405 0.78 -0.7 90,866 + IAI47_00405 0.78 -0.7 90,866 + IAI47_00405 0.78 +1.3 90,866 + IAI47_00405 0.78 -0.9 90,867 - IAI47_00405 0.78 -0.8 90,867 - IAI47_00405 0.78 +1.2 90,890 + IAI47_00405 0.83 -2.0 90,890 + IAI47_00405 0.83 +0.7 90,918 + IAI47_00405 0.88 +0.4 90,918 + IAI47_00405 0.88 +0.0 90,932 + -1.1 90,933 - +0.5 90,963 + -2.3 90,963 + -0.4 90,963 + -0.9 90,963 + -0.8 90,963 + -1.6 90,963 + -0.5 90,964 - +0.6 90,964 - +1.4 90,964 - +0.6 90,970 - -0.6 90,977 + -1.5 90,977 + -0.4 90,977 + +0.0 90,977 + -0.9 90,977 + -1.8 90,977 + -0.6 90,977 + -0.9 90,977 + -1.2 90,977 + -0.0 90,977 + -0.6 90,977 + -0.5 90,977 + -0.1 90,977 + +0.4 90,977 + -2.9 90,977 + +0.1 90,977 + -2.5 90,977 + +0.1 90,978 - +0.5 90,978 - -1.1 90,978 - +0.4 90,978 - +0.3 90,978 - +0.4 90,978 - +0.4 90,978 - -0.4 90,978 - -1.2 90,978 - +0.6 90,978 - +0.1 90,978 - +0.3 90,978 - +2.5 90,978 - +0.2 91,008 + -1.2 91,008 + -1.4 91,008 + -3.0 91,008 + -0.6 91,008 + -0.1 91,009 - +0.0 91,011 + -1.6 91,011 + -0.9 91,011 + -1.6 91,012 - -0.7 91,012 - -1.4 91,012 - -0.5 91,012 - +0.6 91,012 - +0.0 91,012 - +0.8 91,012 - +0.3 91,012 - -0.5 91,012 - +1.3 91,012 - +0.3 91,012 - +0.1 91,014 + -0.6 91,015 - -1.2 91,015 - +0.1 91,015 - +0.0 91,015 - -1.0 91,015 - -0.4 91,048 + IAI47_00410 0.12 -0.2 91,048 + IAI47_00410 0.12 -2.2 91,048 + IAI47_00410 0.12 -1.5 91,049 - IAI47_00410 0.12 -0.4 91,083 + IAI47_00410 0.18 -0.6 91,083 + IAI47_00410 0.18 -0.3 91,083 + IAI47_00410 0.18 -0.0 91,083 + IAI47_00410 0.18 -0.8 91,084 - IAI47_00410 0.19 -1.1 91,084 - IAI47_00410 0.19 -0.1 91,084 - IAI47_00410 0.19 -0.1 91,084 - IAI47_00410 0.19 -0.7 91,084 - IAI47_00410 0.19 +1.3 91,084 - IAI47_00410 0.19 -1.4 91,084 - IAI47_00410 0.19 -0.7 91,084 - IAI47_00410 0.19 -0.5 91,084 - IAI47_00410 0.19 -1.0 91,084 - IAI47_00410 0.19 -0.7 91,109 + IAI47_00410 0.23 +1.4 91,109 + IAI47_00410 0.23 -1.7 91,110 - IAI47_00410 0.23 -2.1 91,110 - IAI47_00410 0.23 -0.1 91,110 - IAI47_00410 0.23 +0.6 91,110 - IAI47_00410 0.23 -1.3 91,115 + IAI47_00410 0.24 +0.2 91,115 + IAI47_00410 0.24 -0.3 91,115 + IAI47_00410 0.24 -0.1 91,115 + IAI47_00410 0.24 -0.4 91,115 + IAI47_00410 0.24 -0.8 91,116 - IAI47_00410 0.24 -1.6 91,116 - IAI47_00410 0.24 -0.9 91,116 - IAI47_00410 0.24 -0.3 91,116 - IAI47_00410 0.24 -2.2 91,131 + IAI47_00410 0.27 -2.0 91,131 + IAI47_00410 0.27 -0.1 91,131 + IAI47_00410 0.27 -0.6 91,131 + IAI47_00410 0.27 -1.5 91,132 - IAI47_00410 0.27 +0.7
Or see this region's nucleotide sequence