Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09350 and PGA1_c09360 are separated by 214 nucleotides PGA1_c09360 and PGA1_c09370 are separated by 214 nucleotides PGA1_c09370 and PGA1_c09380 are separated by 67 nucleotides PGA1_c09380 and PGA1_c09390 are separated by 112 nucleotides
PGA1_c09350: PGA1_c09350 - aminotransferase class-III, at 954,641 to 955,993
_c09350
PGA1_c09360: PGA1_c09360 - tRNA-Gly, at 956,208 to 956,282
_c09360
PGA1_c09370: PGA1_c09370 - tRNA-Gly, at 956,497 to 956,571
_c09370
PGA1_c09380: PGA1_c09380 - putative type 2 restriction enzyme naeI, at 956,639 to 957,550
_c09380
PGA1_c09390: PGA1_c09390 - modification methylase NaeI, at 957,663 to 958,637
_c09390
Position (kb) 956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 955.666 kb on - strand, within PGA1_c09350 at 955.703 kb on + strand, within PGA1_c09350 at 955.783 kb on + strand, within PGA1_c09350 at 955.845 kb on + strand, within PGA1_c09350 at 955.860 kb on + strand at 955.863 kb on - strand at 955.873 kb on - strand at 955.890 kb on - strand at 955.905 kb on + strand at 955.923 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.956 kb on - strand at 955.999 kb on + strand at 956.002 kb on - strand at 956.065 kb on - strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.143 kb on - strand at 956.143 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.332 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.469 kb on + strand at 956.493 kb on - strand at 956.620 kb on - strand at 956.701 kb on + strand at 956.763 kb on - strand, within PGA1_c09380 at 956.763 kb on - strand, within PGA1_c09380 at 956.768 kb on + strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.824 kb on + strand, within PGA1_c09380 at 956.891 kb on - strand, within PGA1_c09380 at 956.918 kb on + strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.928 kb on + strand, within PGA1_c09380 at 956.931 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.971 kb on - strand, within PGA1_c09380 at 957.021 kb on + strand, within PGA1_c09380 at 957.021 kb on + strand, within PGA1_c09380 at 957.029 kb on - strand, within PGA1_c09380 at 957.061 kb on - strand, within PGA1_c09380 at 957.098 kb on - strand, within PGA1_c09380 at 957.103 kb on - strand, within PGA1_c09380 at 957.105 kb on + strand, within PGA1_c09380 at 957.171 kb on - strand, within PGA1_c09380 at 957.180 kb on + strand, within PGA1_c09380 at 957.255 kb on - strand, within PGA1_c09380 at 957.307 kb on + strand, within PGA1_c09380 at 957.358 kb on - strand, within PGA1_c09380 at 957.380 kb on - strand, within PGA1_c09380 at 957.445 kb on - strand, within PGA1_c09380 at 957.451 kb on + strand, within PGA1_c09380 at 957.468 kb on + strand at 957.496 kb on - strand at 957.516 kb on + strand at 957.516 kb on + strand at 957.519 kb on - strand at 957.614 kb on - strand at 957.614 kb on - strand at 957.620 kb on - strand at 957.661 kb on - strand at 957.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 955,666 - PGA1_c09350 0.76 +1.4 955,703 + PGA1_c09350 0.78 +0.9 955,783 + PGA1_c09350 0.84 +0.1 955,845 + PGA1_c09350 0.89 -1.0 955,860 + -0.1 955,863 - +0.1 955,873 - -1.1 955,890 - +0.0 955,905 + +0.9 955,923 + -0.4 955,933 + +0.2 955,933 + +0.2 955,933 + -0.2 955,938 + -0.6 955,938 + +1.1 955,938 + +0.3 955,938 + +0.9 955,938 + +0.2 955,938 + +1.2 955,941 - +0.3 955,941 - -0.2 955,941 - +0.6 955,941 - -0.6 955,946 - +0.6 955,946 - +0.8 955,946 - -0.0 955,946 - +0.3 955,946 - -0.2 955,946 - +1.0 955,946 - +0.5 955,956 - -0.3 955,999 + -0.2 956,002 - +0.4 956,065 - +0.1 956,135 + -0.6 956,135 + -0.2 956,135 + +0.2 956,143 - -0.5 956,143 - +0.9 956,146 - +0.4 956,146 - -0.5 956,146 - -0.6 956,146 - +0.1 956,332 - -0.4 956,384 - -1.3 956,384 - -0.6 956,384 - -0.6 956,469 + -1.2 956,493 - +0.4 956,620 - +0.0 956,701 + +0.6 956,763 - PGA1_c09380 0.14 -1.0 956,763 - PGA1_c09380 0.14 +0.4 956,768 + PGA1_c09380 0.14 -1.3 956,776 - PGA1_c09380 0.15 -0.9 956,776 - PGA1_c09380 0.15 -0.1 956,776 - PGA1_c09380 0.15 -0.4 956,824 + PGA1_c09380 0.20 -0.6 956,891 - PGA1_c09380 0.28 +0.7 956,918 + PGA1_c09380 0.31 -1.0 956,926 - PGA1_c09380 0.31 -1.2 956,926 - PGA1_c09380 0.31 -1.5 956,928 + PGA1_c09380 0.32 +0.2 956,931 - PGA1_c09380 0.32 -1.0 956,936 - PGA1_c09380 0.33 -1.0 956,936 - PGA1_c09380 0.33 -0.5 956,936 - PGA1_c09380 0.33 +0.2 956,971 - PGA1_c09380 0.36 -1.2 957,021 + PGA1_c09380 0.42 +1.1 957,021 + PGA1_c09380 0.42 -2.0 957,029 - PGA1_c09380 0.43 +0.4 957,061 - PGA1_c09380 0.46 -0.3 957,098 - PGA1_c09380 0.50 -0.9 957,103 - PGA1_c09380 0.51 -1.5 957,105 + PGA1_c09380 0.51 +0.3 957,171 - PGA1_c09380 0.58 -2.3 957,180 + PGA1_c09380 0.59 -0.9 957,255 - PGA1_c09380 0.68 -1.3 957,307 + PGA1_c09380 0.73 -0.7 957,358 - PGA1_c09380 0.79 -1.3 957,380 - PGA1_c09380 0.81 +1.0 957,445 - PGA1_c09380 0.88 +0.4 957,451 + PGA1_c09380 0.89 -1.3 957,468 + -0.8 957,496 - -0.8 957,516 + -0.1 957,516 + -1.2 957,519 - -0.3 957,614 - -0.9 957,614 - -3.1 957,620 - +0.2 957,661 - +0.5 957,669 - -0.3
Or see this region's nucleotide sequence