Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08580 and PGA1_c08590 are separated by 94 nucleotides PGA1_c08590 and PGA1_c08600 overlap by 1 nucleotides
PGA1_c08580: PGA1_c08580 - hypothetical protein, at 885,167 to 886,957
_c08580
PGA1_c08590: PGA1_c08590 - heme NO binding domain-containing protein, at 887,052 to 887,639
_c08590
PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640
_c08600
Position (kb) 887
888 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 886.061 kb on + strand, within PGA1_c08580 at 886.069 kb on - strand, within PGA1_c08580 at 886.097 kb on + strand, within PGA1_c08580 at 886.147 kb on + strand, within PGA1_c08580 at 886.243 kb on + strand, within PGA1_c08580 at 886.249 kb on + strand, within PGA1_c08580 at 886.355 kb on + strand, within PGA1_c08580 at 886.355 kb on + strand, within PGA1_c08580 at 886.377 kb on + strand, within PGA1_c08580 at 886.435 kb on + strand, within PGA1_c08580 at 886.443 kb on - strand, within PGA1_c08580 at 886.502 kb on - strand, within PGA1_c08580 at 886.502 kb on - strand, within PGA1_c08580 at 886.542 kb on + strand, within PGA1_c08580 at 886.553 kb on + strand, within PGA1_c08580 at 886.559 kb on + strand, within PGA1_c08580 at 886.689 kb on + strand, within PGA1_c08580 at 886.697 kb on - strand, within PGA1_c08580 at 886.741 kb on - strand, within PGA1_c08580 at 886.748 kb on + strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.775 kb on + strand, within PGA1_c08580 at 886.785 kb on + strand at 886.785 kb on + strand at 886.793 kb on + strand at 886.793 kb on - strand at 886.793 kb on - strand at 886.801 kb on - strand at 886.801 kb on - strand at 886.811 kb on - strand at 886.819 kb on + strand at 886.827 kb on - strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.887 kb on - strand at 886.897 kb on + strand at 886.917 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.940 kb on + strand at 886.940 kb on - strand at 886.940 kb on - strand at 886.945 kb on + strand at 886.947 kb on - strand at 886.950 kb on + strand at 886.951 kb on + strand at 886.953 kb on + strand at 886.953 kb on - strand at 886.959 kb on - strand at 886.966 kb on - strand at 887.010 kb on - strand at 887.010 kb on - strand at 887.025 kb on - strand at 887.032 kb on + strand at 887.049 kb on + strand at 887.052 kb on - strand at 887.057 kb on - strand at 887.063 kb on + strand at 887.076 kb on + strand at 887.131 kb on + strand, within PGA1_c08590 at 887.171 kb on + strand, within PGA1_c08590 at 887.179 kb on + strand, within PGA1_c08590 at 887.184 kb on - strand, within PGA1_c08590 at 887.217 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.293 kb on - strand, within PGA1_c08590 at 887.376 kb on - strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.489 kb on + strand, within PGA1_c08590 at 887.513 kb on - strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.560 kb on - strand, within PGA1_c08590 at 887.564 kb on + strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.572 kb on - strand, within PGA1_c08590 at 887.578 kb on + strand, within PGA1_c08590 at 887.619 kb on - strand at 887.634 kb on + strand at 887.646 kb on - strand at 887.810 kb on + strand, within PGA1_c08600 at 887.814 kb on - strand, within PGA1_c08600 at 887.818 kb on - strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.858 kb on - strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.931 kb on - strand, within PGA1_c08600 at 887.965 kb on + strand, within PGA1_c08600 at 887.973 kb on - strand, within PGA1_c08600 at 887.975 kb on + strand, within PGA1_c08600 at 887.990 kb on - strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.025 kb on - strand, within PGA1_c08600 at 888.080 kb on - strand, within PGA1_c08600 at 888.081 kb on + strand, within PGA1_c08600 at 888.081 kb on + strand, within PGA1_c08600 at 888.089 kb on - strand, within PGA1_c08600 at 888.127 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.157 kb on - strand, within PGA1_c08600 at 888.258 kb on - strand, within PGA1_c08600 at 888.288 kb on - strand, within PGA1_c08600 at 888.288 kb on - strand, within PGA1_c08600 at 888.306 kb on + strand, within PGA1_c08600 at 888.368 kb on + strand, within PGA1_c08600 at 888.521 kb on + strand, within PGA1_c08600 at 888.522 kb on + strand, within PGA1_c08600 at 888.536 kb on + strand, within PGA1_c08600 at 888.537 kb on + strand, within PGA1_c08600 at 888.592 kb on - strand at 888.635 kb on + strand at 888.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 886,061 + PGA1_c08580 0.50 -0.6 886,069 - PGA1_c08580 0.50 +0.5 886,097 + PGA1_c08580 0.52 -0.7 886,147 + PGA1_c08580 0.55 +0.3 886,243 + PGA1_c08580 0.60 -1.3 886,249 + PGA1_c08580 0.60 -0.9 886,355 + PGA1_c08580 0.66 +0.0 886,355 + PGA1_c08580 0.66 -0.2 886,377 + PGA1_c08580 0.68 +0.7 886,435 + PGA1_c08580 0.71 -0.6 886,443 - PGA1_c08580 0.71 -0.3 886,502 - PGA1_c08580 0.75 -0.7 886,502 - PGA1_c08580 0.75 -0.2 886,542 + PGA1_c08580 0.77 -1.2 886,553 + PGA1_c08580 0.77 -0.2 886,559 + PGA1_c08580 0.78 +0.3 886,689 + PGA1_c08580 0.85 -0.6 886,697 - PGA1_c08580 0.85 +0.8 886,741 - PGA1_c08580 0.88 -0.8 886,748 + PGA1_c08580 0.88 +0.3 886,756 - PGA1_c08580 0.89 -1.1 886,756 - PGA1_c08580 0.89 -0.5 886,758 + PGA1_c08580 0.89 -0.3 886,758 + PGA1_c08580 0.89 +0.7 886,758 + PGA1_c08580 0.89 -0.6 886,775 + PGA1_c08580 0.90 +0.2 886,785 + +0.7 886,785 + +0.8 886,793 + -0.1 886,793 - -0.0 886,793 - +0.3 886,801 - -0.0 886,801 - -0.8 886,811 - +0.4 886,819 + +0.0 886,827 - -0.3 886,852 + -0.3 886,852 + +0.4 886,852 + +0.7 886,852 + -0.2 886,852 + +1.1 886,852 + -0.5 886,852 + +0.5 886,852 + +0.1 886,852 + +0.1 886,852 + -0.0 886,852 + -0.6 886,860 - -0.7 886,860 - +0.1 886,860 - +0.8 886,860 - -2.0 886,860 - -2.4 886,860 - -0.4 886,860 - +0.3 886,860 - -0.4 886,860 - -1.8 886,887 - -0.3 886,897 + -0.1 886,917 + +0.2 886,932 + -0.3 886,932 + -0.1 886,932 + -0.1 886,932 + +1.0 886,940 + +0.7 886,940 - -1.0 886,940 - +0.2 886,945 + +0.2 886,947 - -0.2 886,950 + -0.3 886,951 + +0.9 886,953 + +1.8 886,953 - -0.3 886,959 - -1.7 886,966 - -0.3 887,010 - -0.7 887,010 - -2.3 887,025 - +0.1 887,032 + +3.2 887,049 + +4.0 887,052 - +3.2 887,057 - +3.2 887,063 + +5.4 887,076 + +5.7 887,131 + PGA1_c08590 0.13 +5.6 887,171 + PGA1_c08590 0.20 +6.0 887,179 + PGA1_c08590 0.22 +5.7 887,184 - PGA1_c08590 0.22 +4.8 887,217 - PGA1_c08590 0.28 +4.9 887,219 - PGA1_c08590 0.28 +5.3 887,219 - PGA1_c08590 0.28 +5.5 887,219 - PGA1_c08590 0.28 +5.5 887,293 - PGA1_c08590 0.41 +5.1 887,376 - PGA1_c08590 0.55 +5.6 887,388 + PGA1_c08590 0.57 +6.0 887,388 + PGA1_c08590 0.57 +5.4 887,396 - PGA1_c08590 0.59 +5.9 887,396 - PGA1_c08590 0.59 +5.8 887,396 - PGA1_c08590 0.59 +4.9 887,396 - PGA1_c08590 0.59 +5.4 887,466 + PGA1_c08590 0.70 +5.6 887,466 + PGA1_c08590 0.70 +6.2 887,489 + PGA1_c08590 0.74 +5.5 887,513 - PGA1_c08590 0.78 +5.4 887,552 + PGA1_c08590 0.85 +5.5 887,552 + PGA1_c08590 0.85 +5.5 887,555 - PGA1_c08590 0.86 +6.1 887,555 - PGA1_c08590 0.86 +4.8 887,557 + PGA1_c08590 0.86 +5.1 887,557 + PGA1_c08590 0.86 +5.0 887,557 + PGA1_c08590 0.86 +4.8 887,557 + PGA1_c08590 0.86 +5.7 887,557 + PGA1_c08590 0.86 +5.4 887,557 + PGA1_c08590 0.86 +4.9 887,560 - PGA1_c08590 0.86 +5.5 887,564 + PGA1_c08590 0.87 +5.2 887,565 - PGA1_c08590 0.87 +4.5 887,565 - PGA1_c08590 0.87 +5.3 887,565 - PGA1_c08590 0.87 +5.5 887,572 - PGA1_c08590 0.88 +6.2 887,578 + PGA1_c08590 0.89 +5.4 887,619 - +5.0 887,634 + +2.0 887,646 - +3.1 887,810 + PGA1_c08600 0.17 +5.2 887,814 - PGA1_c08600 0.17 +5.4 887,818 - PGA1_c08600 0.18 +5.2 887,836 + PGA1_c08600 0.20 +5.7 887,836 + PGA1_c08600 0.20 +5.1 887,836 + PGA1_c08600 0.20 +5.6 887,836 + PGA1_c08600 0.20 +5.6 887,844 - PGA1_c08600 0.20 +5.4 887,844 - PGA1_c08600 0.20 +5.3 887,844 - PGA1_c08600 0.20 +5.2 887,858 - PGA1_c08600 0.22 +5.8 887,923 + PGA1_c08600 0.28 +5.4 887,923 + PGA1_c08600 0.28 +5.5 887,931 - PGA1_c08600 0.29 +5.6 887,965 + PGA1_c08600 0.33 +5.5 887,973 - PGA1_c08600 0.33 +5.3 887,975 + PGA1_c08600 0.34 +5.5 887,990 - PGA1_c08600 0.35 +5.7 888,017 + PGA1_c08600 0.38 +5.8 888,017 + PGA1_c08600 0.38 +5.7 888,017 + PGA1_c08600 0.38 +6.4 888,017 + PGA1_c08600 0.38 +5.5 888,025 - PGA1_c08600 0.39 +5.2 888,080 - PGA1_c08600 0.44 +5.6 888,081 + PGA1_c08600 0.44 +5.6 888,081 + PGA1_c08600 0.44 +5.5 888,089 - PGA1_c08600 0.45 +5.0 888,127 + PGA1_c08600 0.49 +4.8 888,149 + PGA1_c08600 0.51 +5.6 888,149 + PGA1_c08600 0.51 +5.4 888,149 + PGA1_c08600 0.51 +5.9 888,149 + PGA1_c08600 0.51 +5.3 888,149 + PGA1_c08600 0.51 +5.5 888,157 - PGA1_c08600 0.52 +5.4 888,258 - PGA1_c08600 0.62 +5.4 888,288 - PGA1_c08600 0.65 +5.4 888,288 - PGA1_c08600 0.65 +5.5 888,306 + PGA1_c08600 0.67 +5.3 888,368 + PGA1_c08600 0.73 +5.9 888,521 + PGA1_c08600 0.88 +5.2 888,522 + PGA1_c08600 0.88 +5.5 888,536 + PGA1_c08600 0.90 +6.0 888,537 + PGA1_c08600 0.90 +6.0 888,592 - +6.1 888,635 + +0.4 888,636 - +5.5
Or see this region's nucleotide sequence