Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07920 and PGA1_c07930 overlap by 4 nucleotides PGA1_c07930 and PGA1_c07940 are separated by 129 nucleotides PGA1_c07940 and PGA1_c07950 are separated by 149 nucleotides PGA1_c07950 and PGA1_c07960 are separated by 1 nucleotides
PGA1_c07920: PGA1_c07920 - signal transduction histidine kinase, at 821,849 to 823,264
_c07920
PGA1_c07930: PGA1_c07930 - two-component system response regulator, at 823,261 to 823,926
_c07930
PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033
_c07940
PGA1_c07950: PGA1_c07950 - hypothetical protein, at 825,183 to 825,677
_c07950
PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196
_c07960
Position (kb) 824
825
826 Strain fitness (log2 ratio) -1
0
1 at 823.112 kb on - strand, within PGA1_c07920 at 823.252 kb on - strand at 823.281 kb on + strand at 823.296 kb on + strand at 823.311 kb on + strand at 823.319 kb on - strand at 823.321 kb on + strand at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.459 kb on + strand, within PGA1_c07930 at 823.467 kb on - strand, within PGA1_c07930 at 823.467 kb on - strand, within PGA1_c07930 at 823.472 kb on - strand, within PGA1_c07930 at 823.500 kb on + strand, within PGA1_c07930 at 823.500 kb on + strand, within PGA1_c07930 at 823.500 kb on + strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.584 kb on - strand, within PGA1_c07930 at 823.646 kb on + strand, within PGA1_c07930 at 823.856 kb on - strand, within PGA1_c07930 at 823.893 kb on + strand at 823.893 kb on + strand at 823.951 kb on + strand at 823.959 kb on - strand at 823.969 kb on - strand at 823.994 kb on + strand at 824.088 kb on + strand at 824.088 kb on - strand at 824.109 kb on + strand at 824.190 kb on + strand, within PGA1_c07940 at 824.231 kb on - strand, within PGA1_c07940 at 824.281 kb on + strand, within PGA1_c07940 at 824.310 kb on + strand, within PGA1_c07940 at 824.350 kb on - strand, within PGA1_c07940 at 824.587 kb on + strand, within PGA1_c07940 at 824.613 kb on - strand, within PGA1_c07940 at 824.674 kb on + strand, within PGA1_c07940 at 824.751 kb on - strand, within PGA1_c07940 at 824.755 kb on + strand, within PGA1_c07940 at 824.760 kb on + strand, within PGA1_c07940 at 824.776 kb on + strand, within PGA1_c07940 at 824.937 kb on + strand at 824.952 kb on - strand at 825.034 kb on + strand at 825.050 kb on - strand at 825.334 kb on - strand, within PGA1_c07950 at 825.397 kb on - strand, within PGA1_c07950 at 825.443 kb on + strand, within PGA1_c07950 at 825.631 kb on + strand at 825.664 kb on + strand at 825.908 kb on + strand, within PGA1_c07960 at 825.916 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 823,112 - PGA1_c07920 0.89 +0.5 823,252 - +0.1 823,281 + -0.4 823,296 + -0.7 823,311 + +0.5 823,319 - +1.1 823,321 + +1.1 823,329 - PGA1_c07930 0.10 -1.0 823,329 - PGA1_c07930 0.10 +0.6 823,329 - PGA1_c07930 0.10 +0.5 823,329 - PGA1_c07930 0.10 -0.0 823,329 - PGA1_c07930 0.10 +0.2 823,329 - PGA1_c07930 0.10 -0.9 823,329 - PGA1_c07930 0.10 +1.3 823,329 - PGA1_c07930 0.10 +0.5 823,459 + PGA1_c07930 0.30 -1.3 823,467 - PGA1_c07930 0.31 +0.3 823,467 - PGA1_c07930 0.31 -0.0 823,472 - PGA1_c07930 0.32 +0.7 823,500 + PGA1_c07930 0.36 +0.9 823,500 + PGA1_c07930 0.36 +0.8 823,500 + PGA1_c07930 0.36 +0.5 823,508 - PGA1_c07930 0.37 -0.5 823,508 - PGA1_c07930 0.37 -0.9 823,508 - PGA1_c07930 0.37 -0.2 823,508 - PGA1_c07930 0.37 +0.6 823,584 - PGA1_c07930 0.48 +0.5 823,646 + PGA1_c07930 0.58 -0.1 823,856 - PGA1_c07930 0.89 -0.8 823,893 + -0.4 823,893 + +0.4 823,951 + +0.7 823,959 - +0.4 823,969 - +0.5 823,994 + -0.1 824,088 + -0.4 824,088 - +0.2 824,109 + -0.5 824,190 + PGA1_c07940 0.14 -0.1 824,231 - PGA1_c07940 0.18 -0.4 824,281 + PGA1_c07940 0.23 +0.5 824,310 + PGA1_c07940 0.26 +0.4 824,350 - PGA1_c07940 0.30 -0.7 824,587 + PGA1_c07940 0.54 -0.4 824,613 - PGA1_c07940 0.57 -0.2 824,674 + PGA1_c07940 0.63 -0.0 824,751 - PGA1_c07940 0.71 -0.0 824,755 + PGA1_c07940 0.71 -0.3 824,760 + PGA1_c07940 0.72 +0.8 824,776 + PGA1_c07940 0.74 +1.6 824,937 + +0.2 824,952 - +0.0 825,034 + -0.2 825,050 - -0.1 825,334 - PGA1_c07950 0.31 -0.7 825,397 - PGA1_c07950 0.43 +1.2 825,443 + PGA1_c07950 0.53 +1.0 825,631 + -0.6 825,664 + -0.9 825,908 + PGA1_c07960 0.15 -0.0 825,916 - PGA1_c07960 0.16 -0.2 825,992 - PGA1_c07960 0.21 +0.3 825,992 - PGA1_c07960 0.21 -0.1
Or see this region's nucleotide sequence