Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07900 and PGA1_c07910 are separated by 9 nucleotides PGA1_c07910 and PGA1_c07920 are separated by 26 nucleotides
PGA1_c07900: PGA1_c07900 - alpha-glucoside transport ATP-binding protein AglK, at 819,699 to 820,790
_c07900
PGA1_c07910: PGA1_c07910 - ABC-type Fe3+ transport system, periplasmic component, at 820,800 to 821,822
_c07910
PGA1_c07920: PGA1_c07920 - signal transduction histidine kinase, at 821,849 to 823,264
_c07920
Position (kb) 820
821
822 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 819.810 kb on + strand, within PGA1_c07900 at 819.836 kb on + strand, within PGA1_c07900 at 819.858 kb on + strand, within PGA1_c07900 at 819.933 kb on + strand, within PGA1_c07900 at 819.965 kb on + strand, within PGA1_c07900 at 819.973 kb on - strand, within PGA1_c07900 at 819.985 kb on + strand, within PGA1_c07900 at 820.031 kb on - strand, within PGA1_c07900 at 820.099 kb on - strand, within PGA1_c07900 at 820.099 kb on - strand, within PGA1_c07900 at 820.138 kb on + strand, within PGA1_c07900 at 820.138 kb on + strand, within PGA1_c07900 at 820.168 kb on - strand, within PGA1_c07900 at 820.208 kb on - strand, within PGA1_c07900 at 820.208 kb on - strand, within PGA1_c07900 at 820.248 kb on + strand, within PGA1_c07900 at 820.256 kb on - strand, within PGA1_c07900 at 820.289 kb on - strand, within PGA1_c07900 at 820.304 kb on + strand, within PGA1_c07900 at 820.309 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.365 kb on - strand, within PGA1_c07900 at 820.470 kb on - strand, within PGA1_c07900 at 820.475 kb on + strand, within PGA1_c07900 at 820.521 kb on + strand, within PGA1_c07900 at 820.529 kb on - strand, within PGA1_c07900 at 820.529 kb on - strand, within PGA1_c07900 at 820.574 kb on + strand, within PGA1_c07900 at 820.612 kb on - strand, within PGA1_c07900 at 820.620 kb on + strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.712 kb on - strand at 820.714 kb on + strand at 820.725 kb on - strand at 820.730 kb on - strand at 820.735 kb on - strand at 820.747 kb on + strand at 820.747 kb on + strand at 820.755 kb on - strand at 820.755 kb on - strand at 820.765 kb on - strand at 820.793 kb on - strand at 820.811 kb on + strand at 820.811 kb on + strand at 820.884 kb on + strand at 820.909 kb on - strand, within PGA1_c07910 at 820.925 kb on - strand, within PGA1_c07910 at 820.953 kb on - strand, within PGA1_c07910 at 821.047 kb on - strand, within PGA1_c07910 at 821.054 kb on + strand, within PGA1_c07910 at 821.054 kb on + strand, within PGA1_c07910 at 821.138 kb on - strand, within PGA1_c07910 at 821.139 kb on + strand, within PGA1_c07910 at 821.210 kb on + strand, within PGA1_c07910 at 821.254 kb on + strand, within PGA1_c07910 at 821.280 kb on + strand, within PGA1_c07910 at 821.314 kb on - strand, within PGA1_c07910 at 821.369 kb on + strand, within PGA1_c07910 at 821.377 kb on - strand, within PGA1_c07910 at 821.387 kb on + strand, within PGA1_c07910 at 821.589 kb on + strand, within PGA1_c07910 at 821.597 kb on - strand, within PGA1_c07910 at 821.617 kb on - strand, within PGA1_c07910 at 821.690 kb on - strand, within PGA1_c07910 at 821.723 kb on + strand at 821.838 kb on + strand at 821.846 kb on - strand at 821.846 kb on - strand at 822.049 kb on + strand, within PGA1_c07920 at 822.098 kb on + strand, within PGA1_c07920 at 822.218 kb on - strand, within PGA1_c07920 at 822.228 kb on + strand, within PGA1_c07920 at 822.233 kb on + strand, within PGA1_c07920 at 822.647 kb on - strand, within PGA1_c07920 at 822.685 kb on + strand, within PGA1_c07920 at 822.695 kb on + strand, within PGA1_c07920 at 822.759 kb on - strand, within PGA1_c07920 at 822.803 kb on + strand, within PGA1_c07920 at 822.811 kb on - strand, within PGA1_c07920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 819,810 + PGA1_c07900 0.10 +3.2 819,836 + PGA1_c07900 0.13 +3.3 819,858 + PGA1_c07900 0.15 +2.9 819,933 + PGA1_c07900 0.21 +1.8 819,965 + PGA1_c07900 0.24 +3.9 819,973 - PGA1_c07900 0.25 +0.6 819,985 + PGA1_c07900 0.26 +4.3 820,031 - PGA1_c07900 0.30 +3.4 820,099 - PGA1_c07900 0.37 +2.9 820,099 - PGA1_c07900 0.37 -0.0 820,138 + PGA1_c07900 0.40 +2.4 820,138 + PGA1_c07900 0.40 +2.5 820,168 - PGA1_c07900 0.43 +4.1 820,208 - PGA1_c07900 0.47 +2.6 820,208 - PGA1_c07900 0.47 +3.2 820,248 + PGA1_c07900 0.50 +3.6 820,256 - PGA1_c07900 0.51 +2.6 820,289 - PGA1_c07900 0.54 +2.4 820,304 + PGA1_c07900 0.55 +3.2 820,309 + PGA1_c07900 0.56 +2.8 820,346 + PGA1_c07900 0.59 +3.0 820,346 + PGA1_c07900 0.59 +3.3 820,346 + PGA1_c07900 0.59 +2.8 820,346 + PGA1_c07900 0.59 +2.8 820,354 - PGA1_c07900 0.60 +3.7 820,354 - PGA1_c07900 0.60 +3.3 820,354 - PGA1_c07900 0.60 +2.7 820,365 - PGA1_c07900 0.61 +2.6 820,470 - PGA1_c07900 0.71 +3.6 820,475 + PGA1_c07900 0.71 +2.8 820,521 + PGA1_c07900 0.75 +2.8 820,529 - PGA1_c07900 0.76 +2.9 820,529 - PGA1_c07900 0.76 +3.2 820,574 + PGA1_c07900 0.80 +2.3 820,612 - PGA1_c07900 0.84 +1.4 820,620 + PGA1_c07900 0.84 +2.9 820,648 - PGA1_c07900 0.87 +2.9 820,648 - PGA1_c07900 0.87 +2.8 820,648 - PGA1_c07900 0.87 +3.3 820,712 - +3.4 820,714 + +3.7 820,725 - +3.4 820,730 - +3.6 820,735 - +3.5 820,747 + +2.2 820,747 + +3.2 820,755 - +3.1 820,755 - +3.0 820,765 - +3.4 820,793 - +0.4 820,811 + +0.5 820,811 + +0.6 820,884 + +0.6 820,909 - PGA1_c07910 0.11 +0.1 820,925 - PGA1_c07910 0.12 +0.1 820,953 - PGA1_c07910 0.15 +0.2 821,047 - PGA1_c07910 0.24 +0.9 821,054 + PGA1_c07910 0.25 -0.8 821,054 + PGA1_c07910 0.25 +0.9 821,138 - PGA1_c07910 0.33 -1.0 821,139 + PGA1_c07910 0.33 +0.7 821,210 + PGA1_c07910 0.40 +1.1 821,254 + PGA1_c07910 0.44 +2.2 821,280 + PGA1_c07910 0.47 -0.2 821,314 - PGA1_c07910 0.50 -0.2 821,369 + PGA1_c07910 0.56 +0.9 821,377 - PGA1_c07910 0.56 +1.4 821,387 + PGA1_c07910 0.57 +0.4 821,589 + PGA1_c07910 0.77 +0.1 821,597 - PGA1_c07910 0.78 -0.6 821,617 - PGA1_c07910 0.80 +0.1 821,690 - PGA1_c07910 0.87 +0.3 821,723 + +1.7 821,838 + +1.1 821,846 - +0.0 821,846 - -0.4 822,049 + PGA1_c07920 0.14 -0.3 822,098 + PGA1_c07920 0.18 +0.1 822,218 - PGA1_c07920 0.26 +0.1 822,228 + PGA1_c07920 0.27 +1.0 822,233 + PGA1_c07920 0.27 +0.6 822,647 - PGA1_c07920 0.56 -0.9 822,685 + PGA1_c07920 0.59 +0.8 822,695 + PGA1_c07920 0.60 -1.1 822,759 - PGA1_c07920 0.64 -0.4 822,803 + PGA1_c07920 0.67 -0.4 822,811 - PGA1_c07920 0.68 +0.4
Or see this region's nucleotide sequence