Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07890

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07880 and PGA1_c07890 are separated by 65 nucleotidesPGA1_c07890 and PGA1_c07900 are separated by 31 nucleotides PGA1_c07880: PGA1_c07880 - alpha-glucoside transport system permease protein AglG, at 816,795 to 817,943 _c07880 PGA1_c07890: PGA1_c07890 - cytoplasmic trehalase (AlgA) (from data), at 818,009 to 819,667 _c07890 PGA1_c07900: PGA1_c07900 - alpha-glucoside transport ATP-binding protein AglK, at 819,699 to 820,790 _c07900 Position (kb) 818 819 820Strain fitness (log2 ratio) -1 0 1 2 3 4at 817.082 kb on - strand, within PGA1_c07880at 817.121 kb on - strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.273 kb on - strand, within PGA1_c07880at 817.301 kb on + strand, within PGA1_c07880at 817.422 kb on + strand, within PGA1_c07880at 817.445 kb on - strand, within PGA1_c07880at 817.451 kb on + strand, within PGA1_c07880at 817.520 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.526 kb on - strand, within PGA1_c07880at 817.697 kb on - strand, within PGA1_c07880at 817.752 kb on + strand, within PGA1_c07880at 817.754 kb on - strand, within PGA1_c07880at 817.785 kb on + strand, within PGA1_c07880at 817.848 kb on + strandat 817.848 kb on + strandat 817.955 kb on + strandat 817.963 kb on - strandat 817.968 kb on - strandat 817.973 kb on - strandat 817.973 kb on - strandat 817.985 kb on - strandat 818.103 kb on + strandat 818.111 kb on - strandat 818.151 kb on + strandat 818.236 kb on - strand, within PGA1_c07890at 818.319 kb on + strand, within PGA1_c07890at 818.325 kb on - strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.366 kb on + strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.384 kb on + strand, within PGA1_c07890at 818.401 kb on - strand, within PGA1_c07890at 818.428 kb on + strand, within PGA1_c07890at 818.428 kb on + strand, within PGA1_c07890at 818.433 kb on + strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.524 kb on + strand, within PGA1_c07890at 818.531 kb on - strand, within PGA1_c07890at 818.544 kb on - strand, within PGA1_c07890at 818.566 kb on - strand, within PGA1_c07890at 818.577 kb on - strand, within PGA1_c07890at 818.628 kb on + strand, within PGA1_c07890at 818.637 kb on + strand, within PGA1_c07890at 818.656 kb on - strand, within PGA1_c07890at 818.673 kb on + strand, within PGA1_c07890at 818.975 kb on - strand, within PGA1_c07890at 819.017 kb on + strand, within PGA1_c07890at 819.082 kb on - strand, within PGA1_c07890at 819.124 kb on + strand, within PGA1_c07890at 819.134 kb on + strand, within PGA1_c07890at 819.155 kb on + strand, within PGA1_c07890at 819.228 kb on + strand, within PGA1_c07890at 819.265 kb on - strand, within PGA1_c07890at 819.290 kb on - strand, within PGA1_c07890at 819.306 kb on + strand, within PGA1_c07890at 819.310 kb on + strand, within PGA1_c07890at 819.399 kb on + strand, within PGA1_c07890at 819.449 kb on - strand, within PGA1_c07890at 819.471 kb on - strand, within PGA1_c07890at 819.493 kb on - strand, within PGA1_c07890at 819.549 kb on + strandat 819.556 kb on + strandat 819.731 kb on + strandat 819.731 kb on + strandat 819.739 kb on - strandat 819.739 kb on - strandat 819.810 kb on + strand, within PGA1_c07900at 819.836 kb on + strand, within PGA1_c07900at 819.858 kb on + strand, within PGA1_c07900at 819.933 kb on + strand, within PGA1_c07900at 819.965 kb on + strand, within PGA1_c07900at 819.973 kb on - strand, within PGA1_c07900at 819.985 kb on + strand, within PGA1_c07900at 820.031 kb on - strand, within PGA1_c07900at 820.099 kb on - strand, within PGA1_c07900at 820.099 kb on - strand, within PGA1_c07900at 820.138 kb on + strand, within PGA1_c07900at 820.138 kb on + strand, within PGA1_c07900at 820.168 kb on - strand, within PGA1_c07900at 820.208 kb on - strand, within PGA1_c07900at 820.208 kb on - strand, within PGA1_c07900at 820.248 kb on + strand, within PGA1_c07900at 820.256 kb on - strand, within PGA1_c07900at 820.289 kb on - strand, within PGA1_c07900at 820.304 kb on + strand, within PGA1_c07900at 820.309 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.365 kb on - strand, within PGA1_c07900at 820.470 kb on - strand, within PGA1_c07900at 820.475 kb on + strand, within PGA1_c07900at 820.521 kb on + strand, within PGA1_c07900at 820.529 kb on - strand, within PGA1_c07900at 820.529 kb on - strand, within PGA1_c07900at 820.574 kb on + strand, within PGA1_c07900at 820.612 kb on - strand, within PGA1_c07900at 820.620 kb on + strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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817,082 - PGA1_c07880 0.25 +2.5
817,121 - PGA1_c07880 0.28 +3.5
817,123 + PGA1_c07880 0.29 +3.0
817,123 + PGA1_c07880 0.29 +3.0
817,123 + PGA1_c07880 0.29 +2.6
817,131 - PGA1_c07880 0.29 +3.5
817,131 - PGA1_c07880 0.29 +2.8
817,213 + PGA1_c07880 0.36 +3.9
817,213 + PGA1_c07880 0.36 +3.4
817,213 + PGA1_c07880 0.36 +2.6
817,213 + PGA1_c07880 0.36 +3.0
817,273 - PGA1_c07880 0.42 +3.3
817,301 + PGA1_c07880 0.44 +2.2
817,422 + PGA1_c07880 0.55 +3.1
817,445 - PGA1_c07880 0.57 +2.4
817,451 + PGA1_c07880 0.57 +3.7
817,520 - PGA1_c07880 0.63 +2.4
817,525 - PGA1_c07880 0.64 +3.3
817,525 - PGA1_c07880 0.64 +4.0
817,526 - PGA1_c07880 0.64 +3.4
817,697 - PGA1_c07880 0.79 +3.1
817,752 + PGA1_c07880 0.83 +3.1
817,754 - PGA1_c07880 0.83 +2.7
817,785 + PGA1_c07880 0.86 +2.6
817,848 + +3.8
817,848 + +2.1
817,955 + +2.5
817,963 - +2.5
817,968 - +2.2
817,973 - +2.9
817,973 - +2.4
817,985 - +2.7
818,103 + +3.2
818,111 - +3.2
818,151 + +3.2
818,236 - PGA1_c07890 0.14 +3.0
818,319 + PGA1_c07890 0.19 +3.0
818,325 - PGA1_c07890 0.19 +3.1
818,361 + PGA1_c07890 0.21 +3.1
818,361 + PGA1_c07890 0.21 +3.0
818,361 + PGA1_c07890 0.21 +2.7
818,361 + PGA1_c07890 0.21 +4.1
818,361 + PGA1_c07890 0.21 +3.1
818,366 + PGA1_c07890 0.22 +4.1
818,369 - PGA1_c07890 0.22 +2.6
818,369 - PGA1_c07890 0.22 +3.7
818,369 - PGA1_c07890 0.22 +3.7
818,369 - PGA1_c07890 0.22 +3.5
818,369 - PGA1_c07890 0.22 +3.0
818,369 - PGA1_c07890 0.22 +3.2
818,369 - PGA1_c07890 0.22 +3.8
818,384 + PGA1_c07890 0.23 +3.2
818,401 - PGA1_c07890 0.24 +3.7
818,428 + PGA1_c07890 0.25 +2.8
818,428 + PGA1_c07890 0.25 +2.6
818,433 + PGA1_c07890 0.26 +3.0
818,436 - PGA1_c07890 0.26 +3.3
818,436 - PGA1_c07890 0.26 +3.1
818,436 - PGA1_c07890 0.26 +2.8
818,436 - PGA1_c07890 0.26 +3.1
818,524 + PGA1_c07890 0.31 +1.9
818,531 - PGA1_c07890 0.31 +3.1
818,544 - PGA1_c07890 0.32 +2.3
818,566 - PGA1_c07890 0.34 +3.3
818,577 - PGA1_c07890 0.34 +2.4
818,628 + PGA1_c07890 0.37 +3.1
818,637 + PGA1_c07890 0.38 +3.7
818,656 - PGA1_c07890 0.39 +3.3
818,673 + PGA1_c07890 0.40 +2.9
818,975 - PGA1_c07890 0.58 +3.3
819,017 + PGA1_c07890 0.61 +3.2
819,082 - PGA1_c07890 0.65 +2.8
819,124 + PGA1_c07890 0.67 +2.3
819,134 + PGA1_c07890 0.68 +3.5
819,155 + PGA1_c07890 0.69 +3.1
819,228 + PGA1_c07890 0.73 +1.5
819,265 - PGA1_c07890 0.76 +2.8
819,290 - PGA1_c07890 0.77 +2.6
819,306 + PGA1_c07890 0.78 +1.6
819,310 + PGA1_c07890 0.78 +1.6
819,399 + PGA1_c07890 0.84 +1.8
819,449 - PGA1_c07890 0.87 +2.3
819,471 - PGA1_c07890 0.88 +2.2
819,493 - PGA1_c07890 0.89 +1.2
819,549 + +1.8
819,556 + -1.2
819,731 + +2.8
819,731 + +3.4
819,739 - +3.2
819,739 - +2.8
819,810 + PGA1_c07900 0.10 +3.2
819,836 + PGA1_c07900 0.13 +3.3
819,858 + PGA1_c07900 0.15 +2.9
819,933 + PGA1_c07900 0.21 +1.8
819,965 + PGA1_c07900 0.24 +3.9
819,973 - PGA1_c07900 0.25 +0.6
819,985 + PGA1_c07900 0.26 +4.3
820,031 - PGA1_c07900 0.30 +3.4
820,099 - PGA1_c07900 0.37 +2.9
820,099 - PGA1_c07900 0.37 -0.0
820,138 + PGA1_c07900 0.40 +2.4
820,138 + PGA1_c07900 0.40 +2.5
820,168 - PGA1_c07900 0.43 +4.1
820,208 - PGA1_c07900 0.47 +2.6
820,208 - PGA1_c07900 0.47 +3.2
820,248 + PGA1_c07900 0.50 +3.6
820,256 - PGA1_c07900 0.51 +2.6
820,289 - PGA1_c07900 0.54 +2.4
820,304 + PGA1_c07900 0.55 +3.2
820,309 + PGA1_c07900 0.56 +2.8
820,346 + PGA1_c07900 0.59 +3.0
820,346 + PGA1_c07900 0.59 +3.3
820,346 + PGA1_c07900 0.59 +2.8
820,346 + PGA1_c07900 0.59 +2.8
820,354 - PGA1_c07900 0.60 +3.7
820,354 - PGA1_c07900 0.60 +3.3
820,354 - PGA1_c07900 0.60 +2.7
820,365 - PGA1_c07900 0.61 +2.6
820,470 - PGA1_c07900 0.71 +3.6
820,475 + PGA1_c07900 0.71 +2.8
820,521 + PGA1_c07900 0.75 +2.8
820,529 - PGA1_c07900 0.76 +2.9
820,529 - PGA1_c07900 0.76 +3.2
820,574 + PGA1_c07900 0.80 +2.3
820,612 - PGA1_c07900 0.84 +1.4
820,620 + PGA1_c07900 0.84 +2.9
820,648 - PGA1_c07900 0.87 +2.9
820,648 - PGA1_c07900 0.87 +2.8
820,648 - PGA1_c07900 0.87 +3.3

Or see this region's nucleotide sequence