Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07850 and PGA1_c07860 are separated by 248 nucleotides PGA1_c07860 and PGA1_c07870 are separated by 157 nucleotides
PGA1_c07850: PGA1_c07850 - transcriptional regulator, lacI family, at 812,987 to 814,018
_c07850
PGA1_c07860: PGA1_c07860 - alpha-glucosides-binding periplasmic protein AglE, at 814,267 to 815,619
_c07860
PGA1_c07870: PGA1_c07870 - alpha-glucoside transport system permease protein AglF, at 815,777 to 816,784
_c07870
Position (kb) 814
815
816 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 813.360 kb on + strand, within PGA1_c07850 at 813.408 kb on - strand, within PGA1_c07850 at 813.457 kb on - strand, within PGA1_c07850 at 813.538 kb on - strand, within PGA1_c07850 at 813.546 kb on + strand, within PGA1_c07850 at 813.575 kb on + strand, within PGA1_c07850 at 813.590 kb on + strand, within PGA1_c07850 at 813.598 kb on - strand, within PGA1_c07850 at 813.616 kb on - strand, within PGA1_c07850 at 813.693 kb on + strand, within PGA1_c07850 at 813.920 kb on + strand at 813.930 kb on + strand at 813.985 kb on + strand at 814.061 kb on - strand at 814.071 kb on - strand at 814.071 kb on - strand at 814.094 kb on - strand at 814.112 kb on + strand at 814.223 kb on - strand at 814.241 kb on + strand at 814.298 kb on + strand at 814.298 kb on + strand at 814.306 kb on - strand at 814.306 kb on - strand at 814.326 kb on + strand at 814.326 kb on + strand at 814.326 kb on + strand at 814.387 kb on - strand at 814.389 kb on + strand at 814.419 kb on + strand, within PGA1_c07860 at 814.450 kb on + strand, within PGA1_c07860 at 814.458 kb on - strand, within PGA1_c07860 at 814.458 kb on - strand, within PGA1_c07860 at 814.504 kb on + strand, within PGA1_c07860 at 814.509 kb on + strand, within PGA1_c07860 at 814.509 kb on + strand, within PGA1_c07860 at 814.523 kb on - strand, within PGA1_c07860 at 814.560 kb on + strand, within PGA1_c07860 at 814.611 kb on + strand, within PGA1_c07860 at 814.619 kb on - strand, within PGA1_c07860 at 814.647 kb on - strand, within PGA1_c07860 at 814.652 kb on - strand, within PGA1_c07860 at 814.692 kb on + strand, within PGA1_c07860 at 814.692 kb on + strand, within PGA1_c07860 at 814.700 kb on - strand, within PGA1_c07860 at 814.700 kb on - strand, within PGA1_c07860 at 814.700 kb on - strand, within PGA1_c07860 at 814.720 kb on - strand, within PGA1_c07860 at 814.752 kb on + strand, within PGA1_c07860 at 814.760 kb on - strand, within PGA1_c07860 at 814.838 kb on - strand, within PGA1_c07860 at 814.861 kb on + strand, within PGA1_c07860 at 814.885 kb on + strand, within PGA1_c07860 at 814.940 kb on + strand, within PGA1_c07860 at 814.964 kb on + strand, within PGA1_c07860 at 814.964 kb on + strand, within PGA1_c07860 at 814.964 kb on + strand, within PGA1_c07860 at 814.964 kb on + strand, within PGA1_c07860 at 814.964 kb on + strand, within PGA1_c07860 at 814.964 kb on + strand, within PGA1_c07860 at 814.972 kb on - strand, within PGA1_c07860 at 814.972 kb on - strand, within PGA1_c07860 at 814.972 kb on - strand, within PGA1_c07860 at 814.972 kb on - strand, within PGA1_c07860 at 814.972 kb on - strand, within PGA1_c07860 at 815.036 kb on + strand, within PGA1_c07860 at 815.123 kb on + strand, within PGA1_c07860 at 815.126 kb on + strand, within PGA1_c07860 at 815.131 kb on - strand, within PGA1_c07860 at 815.166 kb on + strand, within PGA1_c07860 at 815.204 kb on + strand, within PGA1_c07860 at 815.260 kb on + strand, within PGA1_c07860 at 815.270 kb on + strand, within PGA1_c07860 at 815.270 kb on + strand, within PGA1_c07860 at 815.278 kb on - strand, within PGA1_c07860 at 815.278 kb on - strand, within PGA1_c07860 at 815.293 kb on - strand, within PGA1_c07860 at 815.293 kb on - strand, within PGA1_c07860 at 815.370 kb on - strand, within PGA1_c07860 at 815.380 kb on + strand, within PGA1_c07860 at 815.398 kb on + strand, within PGA1_c07860 at 815.407 kb on + strand, within PGA1_c07860 at 815.408 kb on - strand, within PGA1_c07860 at 815.429 kb on + strand, within PGA1_c07860 at 815.468 kb on + strand, within PGA1_c07860 at 815.470 kb on + strand, within PGA1_c07860 at 815.492 kb on + strand at 815.500 kb on - strand at 815.537 kb on - strand at 815.577 kb on + strand at 815.613 kb on + strand at 815.622 kb on - strand at 815.639 kb on - strand at 815.710 kb on - strand at 815.717 kb on + strand at 815.719 kb on + strand at 815.798 kb on - strand at 815.800 kb on + strand at 815.819 kb on - strand at 815.867 kb on - strand at 815.930 kb on - strand, within PGA1_c07870 at 815.964 kb on + strand, within PGA1_c07870 at 815.988 kb on - strand, within PGA1_c07870 at 815.993 kb on - strand, within PGA1_c07870 at 816.025 kb on + strand, within PGA1_c07870 at 816.033 kb on - strand, within PGA1_c07870 at 816.153 kb on + strand, within PGA1_c07870 at 816.161 kb on - strand, within PGA1_c07870 at 816.168 kb on + strand, within PGA1_c07870 at 816.168 kb on + strand, within PGA1_c07870 at 816.176 kb on - strand, within PGA1_c07870 at 816.311 kb on + strand, within PGA1_c07870 at 816.356 kb on - strand, within PGA1_c07870 at 816.401 kb on + strand, within PGA1_c07870 at 816.431 kb on - strand, within PGA1_c07870 at 816.452 kb on - strand, within PGA1_c07870 at 816.452 kb on - strand, within PGA1_c07870 at 816.499 kb on + strand, within PGA1_c07870 at 816.579 kb on + strand, within PGA1_c07870 at 816.580 kb on - strand, within PGA1_c07870 at 816.614 kb on + strand, within PGA1_c07870 at 816.619 kb on + strand, within PGA1_c07870
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 813,360 + PGA1_c07850 0.36 +0.9 813,408 - PGA1_c07850 0.41 -0.1 813,457 - PGA1_c07850 0.46 +0.1 813,538 - PGA1_c07850 0.53 +0.2 813,546 + PGA1_c07850 0.54 -0.1 813,575 + PGA1_c07850 0.57 -0.3 813,590 + PGA1_c07850 0.58 -0.8 813,598 - PGA1_c07850 0.59 +0.5 813,616 - PGA1_c07850 0.61 -0.2 813,693 + PGA1_c07850 0.68 +0.4 813,920 + +0.1 813,930 + +0.6 813,985 + +0.2 814,061 - -0.4 814,071 - -0.1 814,071 - +0.1 814,094 - +0.5 814,112 + +1.3 814,223 - +3.5 814,241 + +3.0 814,298 + +4.0 814,298 + +2.7 814,306 - +3.7 814,306 - +3.4 814,326 + +3.3 814,326 + +2.6 814,326 + +3.6 814,387 - +3.1 814,389 + +2.9 814,419 + PGA1_c07860 0.11 +4.1 814,450 + PGA1_c07860 0.14 +0.8 814,458 - PGA1_c07860 0.14 +3.5 814,458 - PGA1_c07860 0.14 +2.8 814,504 + PGA1_c07860 0.18 +3.4 814,509 + PGA1_c07860 0.18 +2.7 814,509 + PGA1_c07860 0.18 +2.9 814,523 - PGA1_c07860 0.19 +2.9 814,560 + PGA1_c07860 0.22 +3.2 814,611 + PGA1_c07860 0.25 +3.5 814,619 - PGA1_c07860 0.26 +3.0 814,647 - PGA1_c07860 0.28 +2.8 814,652 - PGA1_c07860 0.28 +3.2 814,692 + PGA1_c07860 0.31 +2.2 814,692 + PGA1_c07860 0.31 +3.1 814,700 - PGA1_c07860 0.32 +3.1 814,700 - PGA1_c07860 0.32 +3.4 814,700 - PGA1_c07860 0.32 +2.8 814,720 - PGA1_c07860 0.33 +2.9 814,752 + PGA1_c07860 0.36 +3.1 814,760 - PGA1_c07860 0.36 +2.6 814,838 - PGA1_c07860 0.42 +3.3 814,861 + PGA1_c07860 0.44 +2.8 814,885 + PGA1_c07860 0.46 +3.3 814,940 + PGA1_c07860 0.50 +2.9 814,964 + PGA1_c07860 0.52 +3.0 814,964 + PGA1_c07860 0.52 +3.5 814,964 + PGA1_c07860 0.52 +3.2 814,964 + PGA1_c07860 0.52 +3.2 814,964 + PGA1_c07860 0.52 +2.5 814,964 + PGA1_c07860 0.52 +3.3 814,972 - PGA1_c07860 0.52 +3.7 814,972 - PGA1_c07860 0.52 +3.0 814,972 - PGA1_c07860 0.52 +2.8 814,972 - PGA1_c07860 0.52 +2.6 814,972 - PGA1_c07860 0.52 +3.5 815,036 + PGA1_c07860 0.57 +2.5 815,123 + PGA1_c07860 0.63 +2.6 815,126 + PGA1_c07860 0.63 +2.7 815,131 - PGA1_c07860 0.64 +2.3 815,166 + PGA1_c07860 0.66 +3.2 815,204 + PGA1_c07860 0.69 +3.7 815,260 + PGA1_c07860 0.73 +3.3 815,270 + PGA1_c07860 0.74 +3.6 815,270 + PGA1_c07860 0.74 +3.0 815,278 - PGA1_c07860 0.75 +3.2 815,278 - PGA1_c07860 0.75 +3.6 815,293 - PGA1_c07860 0.76 +4.0 815,293 - PGA1_c07860 0.76 +3.6 815,370 - PGA1_c07860 0.82 -1.3 815,380 + PGA1_c07860 0.82 +2.9 815,398 + PGA1_c07860 0.84 +3.1 815,407 + PGA1_c07860 0.84 +3.0 815,408 - PGA1_c07860 0.84 +0.8 815,429 + PGA1_c07860 0.86 +4.4 815,468 + PGA1_c07860 0.89 +3.5 815,470 + PGA1_c07860 0.89 +3.5 815,492 + +3.5 815,500 - +3.4 815,537 - +3.1 815,577 + +3.4 815,613 + +1.9 815,622 - +2.5 815,639 - +2.2 815,710 - +3.2 815,717 + +1.6 815,719 + +1.8 815,798 - +2.9 815,800 + +2.9 815,819 - +2.3 815,867 - +2.9 815,930 - PGA1_c07870 0.15 +2.9 815,964 + PGA1_c07870 0.19 +3.0 815,988 - PGA1_c07870 0.21 +3.7 815,993 - PGA1_c07870 0.21 +3.0 816,025 + PGA1_c07870 0.25 +2.7 816,033 - PGA1_c07870 0.25 +3.4 816,153 + PGA1_c07870 0.37 +3.2 816,161 - PGA1_c07870 0.38 +2.8 816,168 + PGA1_c07870 0.39 +3.0 816,168 + PGA1_c07870 0.39 +3.1 816,176 - PGA1_c07870 0.40 +3.5 816,311 + PGA1_c07870 0.53 +3.9 816,356 - PGA1_c07870 0.57 +3.4 816,401 + PGA1_c07870 0.62 +4.2 816,431 - PGA1_c07870 0.65 +3.1 816,452 - PGA1_c07870 0.67 +2.6 816,452 - PGA1_c07870 0.67 +3.2 816,499 + PGA1_c07870 0.72 +3.5 816,579 + PGA1_c07870 0.80 +3.9 816,580 - PGA1_c07870 0.80 +2.7 816,614 + PGA1_c07870 0.83 +2.7 816,619 + PGA1_c07870 0.84 +3.1
Or see this region's nucleotide sequence