Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07840

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07830 and PGA1_c07840 are separated by 22 nucleotidesPGA1_c07840 and PGA1_c07850 are separated by 26 nucleotides PGA1_c07830: PGA1_c07830 - acetylornithine deacetylase ArgE, at 810,449 to 811,603 _c07830 PGA1_c07840: PGA1_c07840 - Beta-glucosidase (EC 3.2.1.21) (from data), at 811,626 to 812,960 _c07840 PGA1_c07850: PGA1_c07850 - transcriptional regulator, lacI family, at 812,987 to 814,018 _c07850 Position (kb) 811 812 813Strain fitness (log2 ratio) -2 -1 0 1 2at 810.696 kb on - strand, within PGA1_c07830at 810.733 kb on + strand, within PGA1_c07830at 810.733 kb on + strand, within PGA1_c07830at 810.814 kb on - strand, within PGA1_c07830at 810.854 kb on - strand, within PGA1_c07830at 810.897 kb on - strand, within PGA1_c07830at 810.930 kb on + strand, within PGA1_c07830at 810.964 kb on + strand, within PGA1_c07830at 810.983 kb on - strand, within PGA1_c07830at 811.002 kb on + strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.043 kb on + strand, within PGA1_c07830at 811.048 kb on + strand, within PGA1_c07830at 811.104 kb on + strand, within PGA1_c07830at 811.113 kb on - strand, within PGA1_c07830at 811.125 kb on + strand, within PGA1_c07830at 811.133 kb on - strand, within PGA1_c07830at 811.143 kb on - strand, within PGA1_c07830at 811.150 kb on + strand, within PGA1_c07830at 811.153 kb on - strand, within PGA1_c07830at 811.158 kb on - strand, within PGA1_c07830at 811.160 kb on + strand, within PGA1_c07830at 811.229 kb on + strand, within PGA1_c07830at 811.229 kb on + strand, within PGA1_c07830at 811.255 kb on - strand, within PGA1_c07830at 811.327 kb on + strand, within PGA1_c07830at 811.362 kb on - strand, within PGA1_c07830at 811.363 kb on + strand, within PGA1_c07830at 811.372 kb on - strand, within PGA1_c07830at 811.406 kb on - strand, within PGA1_c07830at 811.476 kb on - strand, within PGA1_c07830at 811.568 kb on + strandat 811.576 kb on - strandat 811.628 kb on + strandat 811.651 kb on + strandat 811.681 kb on - strandat 811.722 kb on - strandat 811.742 kb on - strandat 811.742 kb on - strandat 811.782 kb on - strand, within PGA1_c07840at 811.788 kb on + strand, within PGA1_c07840at 811.819 kb on + strand, within PGA1_c07840at 811.819 kb on + strand, within PGA1_c07840at 811.821 kb on + strand, within PGA1_c07840at 811.827 kb on - strand, within PGA1_c07840at 811.827 kb on - strand, within PGA1_c07840at 811.933 kb on + strand, within PGA1_c07840at 811.941 kb on - strand, within PGA1_c07840at 811.946 kb on + strand, within PGA1_c07840at 811.956 kb on - strand, within PGA1_c07840at 812.002 kb on + strand, within PGA1_c07840at 812.010 kb on - strand, within PGA1_c07840at 812.022 kb on - strand, within PGA1_c07840at 812.039 kb on + strand, within PGA1_c07840at 812.040 kb on + strand, within PGA1_c07840at 812.102 kb on - strand, within PGA1_c07840at 812.265 kb on + strand, within PGA1_c07840at 812.275 kb on + strand, within PGA1_c07840at 812.405 kb on + strand, within PGA1_c07840at 812.413 kb on - strand, within PGA1_c07840at 812.449 kb on + strand, within PGA1_c07840at 812.471 kb on - strand, within PGA1_c07840at 812.476 kb on - strand, within PGA1_c07840at 812.605 kb on + strand, within PGA1_c07840at 812.618 kb on - strand, within PGA1_c07840at 812.620 kb on - strand, within PGA1_c07840at 812.678 kb on - strand, within PGA1_c07840at 812.690 kb on + strand, within PGA1_c07840at 812.695 kb on + strand, within PGA1_c07840at 812.703 kb on - strand, within PGA1_c07840at 812.703 kb on - strand, within PGA1_c07840at 812.705 kb on + strand, within PGA1_c07840at 812.864 kb on - strandat 812.984 kb on - strandat 813.014 kb on - strandat 813.058 kb on - strandat 813.136 kb on - strand, within PGA1_c07850at 813.235 kb on - strand, within PGA1_c07850at 813.360 kb on + strand, within PGA1_c07850at 813.408 kb on - strand, within PGA1_c07850at 813.457 kb on - strand, within PGA1_c07850at 813.538 kb on - strand, within PGA1_c07850at 813.546 kb on + strand, within PGA1_c07850at 813.575 kb on + strand, within PGA1_c07850at 813.590 kb on + strand, within PGA1_c07850at 813.598 kb on - strand, within PGA1_c07850at 813.616 kb on - strand, within PGA1_c07850at 813.693 kb on + strand, within PGA1_c07850at 813.920 kb on + strandat 813.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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810,696 - PGA1_c07830 0.21 +0.4
810,733 + PGA1_c07830 0.25 +0.2
810,733 + PGA1_c07830 0.25 -0.6
810,814 - PGA1_c07830 0.32 -0.3
810,854 - PGA1_c07830 0.35 +1.0
810,897 - PGA1_c07830 0.39 -0.8
810,930 + PGA1_c07830 0.42 -0.7
810,964 + PGA1_c07830 0.45 +0.3
810,983 - PGA1_c07830 0.46 -0.9
811,002 + PGA1_c07830 0.48 -1.4
811,010 - PGA1_c07830 0.49 +1.1
811,010 - PGA1_c07830 0.49 -0.1
811,010 - PGA1_c07830 0.49 -0.1
811,043 + PGA1_c07830 0.51 +0.1
811,048 + PGA1_c07830 0.52 +0.1
811,104 + PGA1_c07830 0.57 +1.4
811,113 - PGA1_c07830 0.57 -0.1
811,125 + PGA1_c07830 0.59 +2.0
811,133 - PGA1_c07830 0.59 +0.0
811,143 - PGA1_c07830 0.60 -0.7
811,150 + PGA1_c07830 0.61 +0.7
811,153 - PGA1_c07830 0.61 -0.0
811,158 - PGA1_c07830 0.61 +0.3
811,160 + PGA1_c07830 0.62 +0.1
811,229 + PGA1_c07830 0.68 +1.3
811,229 + PGA1_c07830 0.68 -2.2
811,255 - PGA1_c07830 0.70 +1.2
811,327 + PGA1_c07830 0.76 +0.1
811,362 - PGA1_c07830 0.79 -0.7
811,363 + PGA1_c07830 0.79 +0.4
811,372 - PGA1_c07830 0.80 -2.2
811,406 - PGA1_c07830 0.83 +0.1
811,476 - PGA1_c07830 0.89 +0.2
811,568 + +0.4
811,576 - -0.0
811,628 + -0.2
811,651 + -0.2
811,681 - +0.2
811,722 - +0.5
811,742 - -0.1
811,742 - +0.0
811,782 - PGA1_c07840 0.12 -0.8
811,788 + PGA1_c07840 0.12 +0.3
811,819 + PGA1_c07840 0.14 -0.4
811,819 + PGA1_c07840 0.14 -0.1
811,821 + PGA1_c07840 0.15 +0.9
811,827 - PGA1_c07840 0.15 -0.4
811,827 - PGA1_c07840 0.15 -0.5
811,933 + PGA1_c07840 0.23 -1.3
811,941 - PGA1_c07840 0.24 +0.1
811,946 + PGA1_c07840 0.24 -1.5
811,956 - PGA1_c07840 0.25 +0.4
812,002 + PGA1_c07840 0.28 -0.9
812,010 - PGA1_c07840 0.29 -1.9
812,022 - PGA1_c07840 0.30 +0.9
812,039 + PGA1_c07840 0.31 -0.4
812,040 + PGA1_c07840 0.31 +1.3
812,102 - PGA1_c07840 0.36 -0.1
812,265 + PGA1_c07840 0.48 +0.1
812,275 + PGA1_c07840 0.49 +1.1
812,405 + PGA1_c07840 0.58 -0.3
812,413 - PGA1_c07840 0.59 -0.3
812,449 + PGA1_c07840 0.62 +0.6
812,471 - PGA1_c07840 0.63 +0.4
812,476 - PGA1_c07840 0.64 +0.1
812,605 + PGA1_c07840 0.73 +0.9
812,618 - PGA1_c07840 0.74 -0.8
812,620 - PGA1_c07840 0.74 -1.2
812,678 - PGA1_c07840 0.79 -0.1
812,690 + PGA1_c07840 0.80 -0.0
812,695 + PGA1_c07840 0.80 +1.5
812,703 - PGA1_c07840 0.81 -0.2
812,703 - PGA1_c07840 0.81 -0.2
812,705 + PGA1_c07840 0.81 +0.1
812,864 - -0.2
812,984 - +0.7
813,014 - +0.1
813,058 - -0.3
813,136 - PGA1_c07850 0.14 +0.1
813,235 - PGA1_c07850 0.24 -0.3
813,360 + PGA1_c07850 0.36 +0.9
813,408 - PGA1_c07850 0.41 -0.1
813,457 - PGA1_c07850 0.46 +0.1
813,538 - PGA1_c07850 0.53 +0.2
813,546 + PGA1_c07850 0.54 -0.1
813,575 + PGA1_c07850 0.57 -0.3
813,590 + PGA1_c07850 0.58 -0.8
813,598 - PGA1_c07850 0.59 +0.5
813,616 - PGA1_c07850 0.61 -0.2
813,693 + PGA1_c07850 0.68 +0.4
813,920 + +0.1
813,930 + +0.6

Or see this region's nucleotide sequence