Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06600 and PGA1_c06610 are separated by 1 nucleotides PGA1_c06610 and PGA1_c06620 are separated by 1 nucleotides PGA1_c06620 and PGA1_c06630 are separated by 104 nucleotides PGA1_c06630 and PGA1_c06640 are separated by 177 nucleotides
PGA1_c06600: PGA1_c06600 - putative transcriptional regulator, AsnC family, at 678,069 to 678,527
_c06600
PGA1_c06610: PGA1_c06610 - hypothetical protein, at 678,529 to 679,221
_c06610
PGA1_c06620: PGA1_c06620 - putative FAD-dependent hydroxylase, at 679,223 to 680,419
_c06620
PGA1_c06630: PGA1_c06630 - hypothetical protein, at 680,524 to 680,769
_c06630
PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588
_c06640
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1 at 678.475 kb on - strand, within PGA1_c06600 at 678.526 kb on + strand at 678.526 kb on + strand at 678.526 kb on + strand at 678.546 kb on + strand at 678.615 kb on + strand, within PGA1_c06610 at 678.615 kb on + strand, within PGA1_c06610 at 678.616 kb on + strand, within PGA1_c06610 at 678.623 kb on - strand, within PGA1_c06610 at 678.623 kb on - strand, within PGA1_c06610 at 678.624 kb on - strand, within PGA1_c06610 at 678.624 kb on - strand, within PGA1_c06610 at 678.644 kb on + strand, within PGA1_c06610 at 678.682 kb on - strand, within PGA1_c06610 at 678.706 kb on - strand, within PGA1_c06610 at 678.780 kb on + strand, within PGA1_c06610 at 678.815 kb on + strand, within PGA1_c06610 at 678.819 kb on + strand, within PGA1_c06610 at 678.823 kb on - strand, within PGA1_c06610 at 678.826 kb on + strand, within PGA1_c06610 at 678.859 kb on - strand, within PGA1_c06610 at 678.861 kb on - strand, within PGA1_c06610 at 678.870 kb on + strand, within PGA1_c06610 at 678.947 kb on + strand, within PGA1_c06610 at 678.950 kb on - strand, within PGA1_c06610 at 679.019 kb on - strand, within PGA1_c06610 at 679.043 kb on - strand, within PGA1_c06610 at 679.046 kb on + strand, within PGA1_c06610 at 679.059 kb on - strand, within PGA1_c06610 at 679.116 kb on + strand, within PGA1_c06610 at 679.140 kb on + strand, within PGA1_c06610 at 679.145 kb on + strand, within PGA1_c06610 at 679.145 kb on + strand, within PGA1_c06610 at 679.153 kb on - strand at 679.153 kb on - strand at 679.153 kb on - strand at 679.167 kb on + strand at 679.172 kb on + strand at 679.185 kb on - strand at 679.250 kb on - strand at 680.451 kb on + strand at 680.469 kb on - strand at 680.565 kb on - strand, within PGA1_c06630 at 680.575 kb on - strand, within PGA1_c06630 at 680.624 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.740 kb on - strand, within PGA1_c06630 at 680.740 kb on - strand, within PGA1_c06630 at 680.779 kb on + strand at 680.787 kb on - strand at 680.787 kb on - strand at 680.788 kb on - strand at 680.803 kb on + strand at 680.827 kb on - strand at 680.945 kb on + strand at 680.953 kb on - strand at 680.967 kb on + strand at 681.034 kb on + strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.101 kb on + strand, within PGA1_c06640 at 681.201 kb on + strand, within PGA1_c06640 at 681.207 kb on - strand, within PGA1_c06640 at 681.209 kb on - strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.381 kb on + strand, within PGA1_c06640
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 678,475 - PGA1_c06600 0.88 -2.0 678,526 + -0.6 678,526 + -0.9 678,526 + -0.5 678,546 + -0.1 678,615 + PGA1_c06610 0.12 -0.8 678,615 + PGA1_c06610 0.12 +0.3 678,616 + PGA1_c06610 0.13 -0.3 678,623 - PGA1_c06610 0.14 +0.6 678,623 - PGA1_c06610 0.14 -0.1 678,624 - PGA1_c06610 0.14 +0.2 678,624 - PGA1_c06610 0.14 +0.0 678,644 + PGA1_c06610 0.17 -0.4 678,682 - PGA1_c06610 0.22 +0.6 678,706 - PGA1_c06610 0.26 +0.0 678,780 + PGA1_c06610 0.36 -1.0 678,815 + PGA1_c06610 0.41 +0.3 678,819 + PGA1_c06610 0.42 -1.0 678,823 - PGA1_c06610 0.42 -0.7 678,826 + PGA1_c06610 0.43 +0.1 678,859 - PGA1_c06610 0.48 -0.2 678,861 - PGA1_c06610 0.48 -0.1 678,870 + PGA1_c06610 0.49 -0.2 678,947 + PGA1_c06610 0.60 +0.6 678,950 - PGA1_c06610 0.61 +0.3 679,019 - PGA1_c06610 0.71 +0.5 679,043 - PGA1_c06610 0.74 -0.4 679,046 + PGA1_c06610 0.75 +0.0 679,059 - PGA1_c06610 0.76 -0.2 679,116 + PGA1_c06610 0.85 -0.7 679,140 + PGA1_c06610 0.88 -0.3 679,145 + PGA1_c06610 0.89 -1.2 679,145 + PGA1_c06610 0.89 +0.4 679,153 - -0.3 679,153 - -0.6 679,153 - -1.6 679,167 + -0.6 679,172 + -1.7 679,185 - +0.1 679,250 - +0.2 680,451 + +0.6 680,469 - +1.1 680,565 - PGA1_c06630 0.17 +0.6 680,575 - PGA1_c06630 0.21 +0.5 680,624 + PGA1_c06630 0.41 -0.5 680,732 + PGA1_c06630 0.85 +0.9 680,732 + PGA1_c06630 0.85 +0.5 680,732 + PGA1_c06630 0.85 +0.1 680,740 - PGA1_c06630 0.88 +1.2 680,740 - PGA1_c06630 0.88 -0.5 680,779 + -0.8 680,787 - +0.8 680,787 - -0.1 680,788 - +1.0 680,803 + -2.4 680,827 - +0.5 680,945 + -0.4 680,953 - +0.6 680,967 + -1.0 681,034 + PGA1_c06640 0.14 +0.1 681,085 - PGA1_c06640 0.21 -0.2 681,085 - PGA1_c06640 0.21 +0.4 681,101 + PGA1_c06640 0.24 +0.2 681,201 + PGA1_c06640 0.40 -0.4 681,207 - PGA1_c06640 0.40 +0.5 681,209 - PGA1_c06640 0.41 -0.1 681,218 + PGA1_c06640 0.42 +0.8 681,218 + PGA1_c06640 0.42 -0.4 681,218 + PGA1_c06640 0.42 -0.1 681,218 + PGA1_c06640 0.42 +0.3 681,226 - PGA1_c06640 0.43 +0.6 681,226 - PGA1_c06640 0.43 +1.5 681,281 + PGA1_c06640 0.52 -0.7 681,281 + PGA1_c06640 0.52 +0.8 681,289 - PGA1_c06640 0.53 -0.6 681,289 - PGA1_c06640 0.53 +0.3 681,381 + PGA1_c06640 0.68 +0.3
Or see this region's nucleotide sequence