Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06140

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06120 and PGA1_c06130 are separated by 200 nucleotidesPGA1_c06130 and PGA1_c06140 are separated by 19 nucleotidesPGA1_c06140 and PGA1_c06150 are separated by 179 nucleotides PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533 _c06120 PGA1_c06130: PGA1_c06130 - outer membrane protein OmpA-like protein, at 627,734 to 628,360 _c06130 PGA1_c06140: PGA1_c06140 - putative bacterial type II/III secretion system protein, at 628,380 to 629,834 _c06140 PGA1_c06150: PGA1_c06150 - Flp pilus assembly protein CpaB-like protein, at 630,014 to 630,874 _c06150 Position (kb) 628 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 627.420 kb on - strandat 627.455 kb on + strandat 627.463 kb on - strandat 627.470 kb on + strandat 627.470 kb on + strandat 627.470 kb on + strandat 627.478 kb on - strandat 627.504 kb on + strandat 627.536 kb on + strandat 627.544 kb on - strandat 627.551 kb on - strandat 627.567 kb on - strandat 627.590 kb on + strandat 627.625 kb on - strandat 627.663 kb on - strandat 627.689 kb on - strandat 627.691 kb on + strandat 627.691 kb on + strandat 627.691 kb on + strandat 627.694 kb on - strandat 627.701 kb on + strandat 627.701 kb on + strandat 627.709 kb on - strandat 627.720 kb on - strandat 627.722 kb on + strandat 627.777 kb on + strandat 627.785 kb on - strandat 627.811 kb on + strand, within PGA1_c06130at 627.982 kb on - strand, within PGA1_c06130at 627.992 kb on + strand, within PGA1_c06130at 628.000 kb on - strand, within PGA1_c06130at 628.013 kb on + strand, within PGA1_c06130at 628.136 kb on - strand, within PGA1_c06130at 628.136 kb on - strand, within PGA1_c06130at 628.157 kb on + strand, within PGA1_c06130at 628.268 kb on + strand, within PGA1_c06130at 628.268 kb on + strand, within PGA1_c06130at 628.291 kb on - strand, within PGA1_c06130at 628.291 kb on - strand, within PGA1_c06130at 628.323 kb on + strandat 628.331 kb on - strandat 628.331 kb on - strandat 628.331 kb on - strandat 628.333 kb on + strandat 628.413 kb on + strandat 628.476 kb on - strandat 628.508 kb on - strandat 628.518 kb on + strandat 628.553 kb on - strand, within PGA1_c06140at 628.613 kb on - strand, within PGA1_c06140at 628.680 kb on + strand, within PGA1_c06140at 628.680 kb on + strand, within PGA1_c06140at 628.688 kb on - strand, within PGA1_c06140at 628.701 kb on + strand, within PGA1_c06140at 628.709 kb on - strand, within PGA1_c06140at 628.735 kb on - strand, within PGA1_c06140at 628.759 kb on + strand, within PGA1_c06140at 628.843 kb on - strand, within PGA1_c06140at 628.863 kb on + strand, within PGA1_c06140at 628.890 kb on - strand, within PGA1_c06140at 628.910 kb on - strand, within PGA1_c06140at 628.926 kb on + strand, within PGA1_c06140at 629.016 kb on - strand, within PGA1_c06140at 629.053 kb on - strand, within PGA1_c06140at 629.099 kb on - strand, within PGA1_c06140at 629.128 kb on - strand, within PGA1_c06140at 629.189 kb on + strand, within PGA1_c06140at 629.214 kb on - strand, within PGA1_c06140at 629.311 kb on - strand, within PGA1_c06140at 629.353 kb on + strand, within PGA1_c06140at 629.365 kb on + strand, within PGA1_c06140at 629.378 kb on - strand, within PGA1_c06140at 629.513 kb on + strand, within PGA1_c06140at 629.513 kb on + strand, within PGA1_c06140at 629.595 kb on - strand, within PGA1_c06140at 629.668 kb on - strand, within PGA1_c06140at 629.674 kb on + strand, within PGA1_c06140at 629.762 kb on + strandat 629.809 kb on + strandat 629.845 kb on + strandat 629.883 kb on - strandat 629.911 kb on + strandat 629.914 kb on + strandat 629.943 kb on - strandat 630.036 kb on + strandat 630.046 kb on + strandat 630.054 kb on - strandat 630.062 kb on + strandat 630.070 kb on - strandat 630.080 kb on - strandat 630.080 kb on - strandat 630.105 kb on - strand, within PGA1_c06150at 630.128 kb on - strand, within PGA1_c06150at 630.134 kb on + strand, within PGA1_c06150at 630.142 kb on - strand, within PGA1_c06150at 630.246 kb on - strand, within PGA1_c06150at 630.307 kb on + strand, within PGA1_c06150at 630.322 kb on + strand, within PGA1_c06150at 630.332 kb on + strand, within PGA1_c06150at 630.337 kb on + strand, within PGA1_c06150at 630.346 kb on - strand, within PGA1_c06150at 630.413 kb on - strand, within PGA1_c06150at 630.439 kb on + strand, within PGA1_c06150at 630.439 kb on + strand, within PGA1_c06150at 630.451 kb on + strand, within PGA1_c06150at 630.485 kb on + strand, within PGA1_c06150at 630.549 kb on - strand, within PGA1_c06150at 630.566 kb on + strand, within PGA1_c06150at 630.566 kb on + strand, within PGA1_c06150at 630.571 kb on + strand, within PGA1_c06150at 630.574 kb on - strand, within PGA1_c06150at 630.574 kb on - strand, within PGA1_c06150at 630.594 kb on - strand, within PGA1_c06150at 630.674 kb on - strand, within PGA1_c06150at 630.683 kb on + strand, within PGA1_c06150at 630.683 kb on + strand, within PGA1_c06150at 630.691 kb on - strand, within PGA1_c06150at 630.707 kb on - strand, within PGA1_c06150at 630.774 kb on + strand, within PGA1_c06150at 630.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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627,420 - +0.3
627,455 + -0.3
627,463 - +0.4
627,470 + -0.6
627,470 + +0.5
627,470 + +1.0
627,478 - -3.6
627,504 + +0.4
627,536 + -0.4
627,544 - -0.4
627,551 - -0.2
627,567 - +0.0
627,590 + +0.1
627,625 - +0.2
627,663 - +0.2
627,689 - +0.3
627,691 + -0.1
627,691 + +0.0
627,691 + -0.8
627,694 - -0.2
627,701 + +0.2
627,701 + +0.5
627,709 - +0.3
627,720 - -0.5
627,722 + -1.0
627,777 + +0.4
627,785 - +0.3
627,811 + PGA1_c06130 0.12 +0.3
627,982 - PGA1_c06130 0.40 +0.2
627,992 + PGA1_c06130 0.41 +0.5
628,000 - PGA1_c06130 0.42 -0.4
628,013 + PGA1_c06130 0.44 -0.6
628,136 - PGA1_c06130 0.64 +0.1
628,136 - PGA1_c06130 0.64 +0.6
628,157 + PGA1_c06130 0.67 +0.8
628,268 + PGA1_c06130 0.85 +0.2
628,268 + PGA1_c06130 0.85 +0.5
628,291 - PGA1_c06130 0.89 -1.5
628,291 - PGA1_c06130 0.89 -0.8
628,323 + -0.3
628,331 - +0.4
628,331 - +0.6
628,331 - +0.9
628,333 + -0.7
628,413 + +0.9
628,476 - +2.3
628,508 - +0.9
628,518 + +2.5
628,553 - PGA1_c06140 0.12 +1.4
628,613 - PGA1_c06140 0.16 +0.3
628,680 + PGA1_c06140 0.21 +1.3
628,680 + PGA1_c06140 0.21 +1.0
628,688 - PGA1_c06140 0.21 +0.6
628,701 + PGA1_c06140 0.22 +2.5
628,709 - PGA1_c06140 0.23 +0.7
628,735 - PGA1_c06140 0.24 +2.0
628,759 + PGA1_c06140 0.26 +1.4
628,843 - PGA1_c06140 0.32 +1.7
628,863 + PGA1_c06140 0.33 +1.3
628,890 - PGA1_c06140 0.35 +2.6
628,910 - PGA1_c06140 0.36 +0.4
628,926 + PGA1_c06140 0.38 +0.6
629,016 - PGA1_c06140 0.44 +1.4
629,053 - PGA1_c06140 0.46 +1.3
629,099 - PGA1_c06140 0.49 +2.0
629,128 - PGA1_c06140 0.51 +1.6
629,189 + PGA1_c06140 0.56 +1.5
629,214 - PGA1_c06140 0.57 +2.2
629,311 - PGA1_c06140 0.64 +2.0
629,353 + PGA1_c06140 0.67 +1.9
629,365 + PGA1_c06140 0.68 +1.3
629,378 - PGA1_c06140 0.69 +2.3
629,513 + PGA1_c06140 0.78 +2.2
629,513 + PGA1_c06140 0.78 +2.0
629,595 - PGA1_c06140 0.84 +2.5
629,668 - PGA1_c06140 0.89 +1.2
629,674 + PGA1_c06140 0.89 +0.6
629,762 + +0.5
629,809 + +1.0
629,845 + +0.4
629,883 - +0.6
629,911 + +1.7
629,914 + -1.4
629,943 - -0.1
630,036 + -1.7
630,046 + -0.1
630,054 - -1.0
630,062 + +0.2
630,070 - +0.0
630,080 - +1.6
630,080 - +1.0
630,105 - PGA1_c06150 0.11 +0.8
630,128 - PGA1_c06150 0.13 +0.2
630,134 + PGA1_c06150 0.14 -0.1
630,142 - PGA1_c06150 0.15 -0.5
630,246 - PGA1_c06150 0.27 -0.1
630,307 + PGA1_c06150 0.34 +0.8
630,322 + PGA1_c06150 0.36 +0.0
630,332 + PGA1_c06150 0.37 +0.3
630,337 + PGA1_c06150 0.38 -0.2
630,346 - PGA1_c06150 0.39 +0.6
630,413 - PGA1_c06150 0.46 +0.3
630,439 + PGA1_c06150 0.49 -0.8
630,439 + PGA1_c06150 0.49 +0.4
630,451 + PGA1_c06150 0.51 +0.0
630,485 + PGA1_c06150 0.55 -0.3
630,549 - PGA1_c06150 0.62 -1.0
630,566 + PGA1_c06150 0.64 +0.3
630,566 + PGA1_c06150 0.64 +0.2
630,571 + PGA1_c06150 0.65 +0.2
630,574 - PGA1_c06150 0.65 -0.1
630,574 - PGA1_c06150 0.65 -0.7
630,594 - PGA1_c06150 0.67 +0.7
630,674 - PGA1_c06150 0.77 -0.4
630,683 + PGA1_c06150 0.78 -0.9
630,683 + PGA1_c06150 0.78 -0.2
630,691 - PGA1_c06150 0.79 +1.2
630,707 - PGA1_c06150 0.80 +0.2
630,774 + PGA1_c06150 0.88 -0.1
630,830 - -0.6

Or see this region's nucleotide sequence