Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g47

Experiment: m.b. Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g45 and HP15_p42g46 are separated by 3 nucleotidesHP15_p42g46 and HP15_p42g47 are separated by 2 nucleotidesHP15_p42g47 and HP15_p42g48 are separated by 17 nucleotidesHP15_p42g48 and HP15_p42g49 overlap by 1 nucleotides HP15_p42g45: HP15_p42g45 - conjugation TrbI family protein, at 34,414 to 35,841 _p42g45 HP15_p42g46: HP15_p42g46 - conjugal transfer, TrbH, at 35,845 to 36,360 _p42g46 HP15_p42g47: HP15_p42g47 - conjugal transfer protein TrbG/VirB9/CagX, at 36,363 to 37,268 _p42g47 HP15_p42g48: HP15_p42g48 - conjugal transfer, TrbF, at 37,286 to 38,068 _p42g48 HP15_p42g49: HP15_p42g49 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 38,068 to 40,608 _p42g49 Position (kb) 36 37 38Strain fitness (log2 ratio) -1 0 1 2 3at 35.421 kb on + strand, within HP15_p42g45at 35.486 kb on + strand, within HP15_p42g45at 35.662 kb on + strand, within HP15_p42g45at 35.682 kb on - strand, within HP15_p42g45at 35.725 kb on + strandat 35.725 kb on + strandat 35.732 kb on - strandat 35.732 kb on - strandat 35.818 kb on - strandat 35.842 kb on + strandat 35.944 kb on + strand, within HP15_p42g46at 35.946 kb on + strand, within HP15_p42g46at 35.946 kb on + strand, within HP15_p42g46at 35.948 kb on + strand, within HP15_p42g46at 35.991 kb on + strand, within HP15_p42g46at 36.011 kb on + strand, within HP15_p42g46at 36.019 kb on - strand, within HP15_p42g46at 36.019 kb on - strand, within HP15_p42g46at 36.029 kb on - strand, within HP15_p42g46at 36.040 kb on + strand, within HP15_p42g46at 36.045 kb on + strand, within HP15_p42g46at 36.050 kb on + strand, within HP15_p42g46at 36.055 kb on + strand, within HP15_p42g46at 36.058 kb on - strand, within HP15_p42g46at 36.058 kb on - strand, within HP15_p42g46at 36.109 kb on + strand, within HP15_p42g46at 36.109 kb on + strand, within HP15_p42g46at 36.115 kb on - strand, within HP15_p42g46at 36.117 kb on - strand, within HP15_p42g46at 36.145 kb on + strand, within HP15_p42g46at 36.145 kb on + strand, within HP15_p42g46at 36.153 kb on - strand, within HP15_p42g46at 36.153 kb on - strand, within HP15_p42g46at 36.153 kb on - strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.258 kb on + strand, within HP15_p42g46at 36.292 kb on + strand, within HP15_p42g46at 36.317 kb on + strandat 36.325 kb on - strandat 36.359 kb on - strandat 36.360 kb on + strandat 36.432 kb on + strandat 36.490 kb on + strand, within HP15_p42g47at 36.511 kb on + strand, within HP15_p42g47at 36.553 kb on - strand, within HP15_p42g47at 36.570 kb on - strand, within HP15_p42g47at 36.614 kb on + strand, within HP15_p42g47at 36.702 kb on + strand, within HP15_p42g47at 36.710 kb on - strand, within HP15_p42g47at 36.759 kb on + strand, within HP15_p42g47at 36.824 kb on + strand, within HP15_p42g47at 36.889 kb on - strand, within HP15_p42g47at 36.901 kb on - strand, within HP15_p42g47at 36.974 kb on - strand, within HP15_p42g47at 36.977 kb on + strand, within HP15_p42g47at 36.999 kb on - strand, within HP15_p42g47at 37.007 kb on - strand, within HP15_p42g47at 37.021 kb on + strand, within HP15_p42g47at 37.029 kb on + strand, within HP15_p42g47at 37.029 kb on - strand, within HP15_p42g47at 37.029 kb on - strand, within HP15_p42g47at 37.095 kb on + strand, within HP15_p42g47at 37.113 kb on - strand, within HP15_p42g47at 37.151 kb on + strand, within HP15_p42g47at 37.151 kb on + strand, within HP15_p42g47at 37.151 kb on + strand, within HP15_p42g47at 37.159 kb on - strand, within HP15_p42g47at 37.159 kb on - strand, within HP15_p42g47at 37.189 kb on - strandat 37.189 kb on - strandat 37.245 kb on - strandat 37.249 kb on - strandat 37.294 kb on + strandat 37.318 kb on + strandat 37.318 kb on + strandat 37.318 kb on + strandat 37.318 kb on + strandat 37.326 kb on - strandat 37.361 kb on - strandat 37.363 kb on + strandat 37.363 kb on + strandat 37.363 kb on + strandat 37.371 kb on - strand, within HP15_p42g48at 37.373 kb on + strand, within HP15_p42g48at 37.390 kb on - strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.411 kb on - strand, within HP15_p42g48at 37.411 kb on - strand, within HP15_p42g48at 37.423 kb on + strand, within HP15_p42g48at 37.423 kb on + strand, within HP15_p42g48at 37.424 kb on + strand, within HP15_p42g48at 37.541 kb on - strand, within HP15_p42g48at 37.560 kb on + strand, within HP15_p42g48at 37.604 kb on + strand, within HP15_p42g48at 37.612 kb on - strand, within HP15_p42g48at 37.612 kb on - strand, within HP15_p42g48at 37.653 kb on - strand, within HP15_p42g48at 37.656 kb on + strand, within HP15_p42g48at 37.691 kb on - strand, within HP15_p42g48at 37.766 kb on - strand, within HP15_p42g48at 37.791 kb on - strand, within HP15_p42g48at 37.799 kb on + strand, within HP15_p42g48at 37.816 kb on + strand, within HP15_p42g48at 37.830 kb on + strand, within HP15_p42g48at 37.840 kb on + strand, within HP15_p42g48at 37.877 kb on + strand, within HP15_p42g48at 37.998 kb on + strandat 38.076 kb on + strandat 38.084 kb on - strandat 38.101 kb on + strandat 38.214 kb on + strandat 38.258 kb on + strandat 38.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 1 mg/ml
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35,421 + HP15_p42g45 0.71 +0.0
35,486 + HP15_p42g45 0.75 -0.1
35,662 + HP15_p42g45 0.87 -0.5
35,682 - HP15_p42g45 0.89 -0.2
35,725 + +0.3
35,725 + -0.1
35,732 - +1.0
35,732 - -0.5
35,818 - -0.0
35,842 + -0.1
35,944 + HP15_p42g46 0.19 +0.0
35,946 + HP15_p42g46 0.20 +0.6
35,946 + HP15_p42g46 0.20 -0.6
35,948 + HP15_p42g46 0.20 +0.1
35,991 + HP15_p42g46 0.28 +0.6
36,011 + HP15_p42g46 0.32 -0.1
36,019 - HP15_p42g46 0.34 -0.2
36,019 - HP15_p42g46 0.34 -0.8
36,029 - HP15_p42g46 0.36 -1.3
36,040 + HP15_p42g46 0.38 +0.3
36,045 + HP15_p42g46 0.39 +0.3
36,050 + HP15_p42g46 0.40 +0.6
36,055 + HP15_p42g46 0.41 +0.4
36,058 - HP15_p42g46 0.41 +1.4
36,058 - HP15_p42g46 0.41 +0.0
36,109 + HP15_p42g46 0.51 -0.1
36,109 + HP15_p42g46 0.51 +0.1
36,115 - HP15_p42g46 0.52 -0.2
36,117 - HP15_p42g46 0.53 +0.5
36,145 + HP15_p42g46 0.58 +0.1
36,145 + HP15_p42g46 0.58 -0.3
36,153 - HP15_p42g46 0.60 +0.1
36,153 - HP15_p42g46 0.60 +0.7
36,153 - HP15_p42g46 0.60 -0.0
36,170 + HP15_p42g46 0.63 -0.0
36,170 + HP15_p42g46 0.63 +0.2
36,170 + HP15_p42g46 0.63 -0.1
36,170 + HP15_p42g46 0.63 +0.5
36,170 + HP15_p42g46 0.63 +0.3
36,258 + HP15_p42g46 0.80 +0.3
36,292 + HP15_p42g46 0.87 +0.7
36,317 + +0.2
36,325 - +0.2
36,359 - +0.2
36,360 + +0.1
36,432 + -0.3
36,490 + HP15_p42g47 0.14 +0.3
36,511 + HP15_p42g47 0.16 +0.2
36,553 - HP15_p42g47 0.21 +0.2
36,570 - HP15_p42g47 0.23 +0.1
36,614 + HP15_p42g47 0.28 -0.3
36,702 + HP15_p42g47 0.37 -0.8
36,710 - HP15_p42g47 0.38 +1.0
36,759 + HP15_p42g47 0.44 -0.2
36,824 + HP15_p42g47 0.51 +3.4
36,889 - HP15_p42g47 0.58 -1.1
36,901 - HP15_p42g47 0.59 +0.1
36,974 - HP15_p42g47 0.67 +0.3
36,977 + HP15_p42g47 0.68 +0.4
36,999 - HP15_p42g47 0.70 +0.1
37,007 - HP15_p42g47 0.71 -0.1
37,021 + HP15_p42g47 0.73 +0.0
37,029 + HP15_p42g47 0.74 +0.3
37,029 - HP15_p42g47 0.74 +0.4
37,029 - HP15_p42g47 0.74 +0.0
37,095 + HP15_p42g47 0.81 +0.1
37,113 - HP15_p42g47 0.83 +0.8
37,151 + HP15_p42g47 0.87 +0.3
37,151 + HP15_p42g47 0.87 +0.3
37,151 + HP15_p42g47 0.87 +0.1
37,159 - HP15_p42g47 0.88 +0.4
37,159 - HP15_p42g47 0.88 -0.1
37,189 - +0.0
37,189 - +0.5
37,245 - +0.2
37,249 - -0.0
37,294 + +0.0
37,318 + -0.2
37,318 + +0.3
37,318 + +0.7
37,318 + +0.6
37,326 - +0.4
37,361 - -0.4
37,363 + +0.0
37,363 + +1.0
37,363 + +0.0
37,371 - HP15_p42g48 0.11 -0.2
37,373 + HP15_p42g48 0.11 -0.1
37,390 - HP15_p42g48 0.13 +0.8
37,403 + HP15_p42g48 0.15 +0.1
37,403 + HP15_p42g48 0.15 +0.7
37,403 + HP15_p42g48 0.15 +0.3
37,403 + HP15_p42g48 0.15 -1.0
37,403 + HP15_p42g48 0.15 +0.1
37,403 + HP15_p42g48 0.15 +0.5
37,403 + HP15_p42g48 0.15 -0.2
37,411 - HP15_p42g48 0.16 +0.1
37,411 - HP15_p42g48 0.16 +0.3
37,423 + HP15_p42g48 0.17 +0.2
37,423 + HP15_p42g48 0.17 -0.1
37,424 + HP15_p42g48 0.18 -0.4
37,541 - HP15_p42g48 0.33 +0.2
37,560 + HP15_p42g48 0.35 -0.1
37,604 + HP15_p42g48 0.41 +0.0
37,612 - HP15_p42g48 0.42 -0.1
37,612 - HP15_p42g48 0.42 -0.0
37,653 - HP15_p42g48 0.47 +0.1
37,656 + HP15_p42g48 0.47 -0.1
37,691 - HP15_p42g48 0.52 +0.1
37,766 - HP15_p42g48 0.61 +0.2
37,791 - HP15_p42g48 0.64 -0.3
37,799 + HP15_p42g48 0.66 +0.9
37,816 + HP15_p42g48 0.68 -0.2
37,830 + HP15_p42g48 0.69 +0.3
37,840 + HP15_p42g48 0.71 +0.5
37,877 + HP15_p42g48 0.75 -0.1
37,998 + +0.1
38,076 + -0.1
38,084 - -1.3
38,101 + -0.2
38,214 + -0.2
38,258 + -0.6
38,266 - +0.6

Or see this region's nucleotide sequence