Experiment: m.b. Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3895 and HP15_3896 are separated by 59 nucleotides HP15_3896 and HP15_3897 are separated by 76 nucleotides HP15_3897 and HP15_3898 are separated by 49 nucleotides
HP15_3895: HP15_3895 - conserved hypothetical protein, membrane, at 4,125,634 to 4,126,701
_3895
HP15_3896: HP15_3896 - hypothetical protein putative signal peptide-like protein, at 4,126,761 to 4,127,879
_3896
HP15_3897: HP15_3897 - conserved hypothetical protein, at 4,127,956 to 4,128,156
_3897
HP15_3898: HP15_3898 - conserved hypothetical protein, secreted, at 4,128,206 to 4,129,690
_3898
Position (kb)
4126
4127
4128 Strain fitness (log2 ratio)
-2
-1
0
1 at 4125.794 kb on - strand, within HP15_3895 at 4125.807 kb on - strand, within HP15_3895 at 4125.969 kb on + strand, within HP15_3895 at 4125.984 kb on + strand, within HP15_3895 at 4126.023 kb on + strand, within HP15_3895 at 4126.037 kb on - strand, within HP15_3895 at 4126.054 kb on + strand, within HP15_3895 at 4126.179 kb on + strand, within HP15_3895 at 4126.189 kb on + strand, within HP15_3895 at 4126.209 kb on - strand, within HP15_3895 at 4126.306 kb on + strand, within HP15_3895 at 4126.383 kb on - strand, within HP15_3895 at 4126.411 kb on - strand, within HP15_3895 at 4126.438 kb on - strand, within HP15_3895 at 4126.565 kb on - strand, within HP15_3895 at 4126.597 kb on + strand at 4126.608 kb on - strand at 4126.623 kb on + strand at 4126.653 kb on - strand at 4126.727 kb on - strand at 4126.727 kb on - strand at 4126.737 kb on - strand at 4126.746 kb on + strand at 4126.791 kb on + strand at 4126.792 kb on + strand at 4126.823 kb on + strand at 4126.831 kb on - strand at 4126.831 kb on - strand at 4126.833 kb on - strand at 4126.844 kb on + strand at 4126.854 kb on - strand at 4126.856 kb on + strand at 4126.881 kb on + strand, within HP15_3896 at 4126.889 kb on - strand, within HP15_3896 at 4126.922 kb on + strand, within HP15_3896 at 4126.930 kb on - strand, within HP15_3896 at 4126.931 kb on - strand, within HP15_3896 at 4127.020 kb on - strand, within HP15_3896 at 4127.032 kb on - strand, within HP15_3896 at 4127.056 kb on + strand, within HP15_3896 at 4127.211 kb on + strand, within HP15_3896 at 4127.244 kb on + strand, within HP15_3896 at 4127.249 kb on + strand, within HP15_3896 at 4127.257 kb on - strand, within HP15_3896 at 4127.295 kb on - strand, within HP15_3896 at 4127.380 kb on + strand, within HP15_3896 at 4127.385 kb on + strand, within HP15_3896 at 4127.424 kb on + strand, within HP15_3896 at 4127.502 kb on + strand, within HP15_3896 at 4127.510 kb on - strand, within HP15_3896 at 4127.593 kb on + strand, within HP15_3896 at 4127.603 kb on + strand, within HP15_3896 at 4127.611 kb on - strand, within HP15_3896 at 4127.611 kb on - strand, within HP15_3896 at 4127.617 kb on + strand, within HP15_3896 at 4127.659 kb on + strand, within HP15_3896 at 4127.701 kb on + strand, within HP15_3896 at 4127.701 kb on + strand, within HP15_3896 at 4127.701 kb on + strand, within HP15_3896 at 4127.703 kb on - strand, within HP15_3896 at 4127.709 kb on - strand, within HP15_3896 at 4127.709 kb on - strand, within HP15_3896 at 4127.733 kb on + strand, within HP15_3896 at 4127.733 kb on + strand, within HP15_3896 at 4127.752 kb on - strand, within HP15_3896 at 4127.812 kb on + strand at 4127.812 kb on + strand at 4127.820 kb on - strand at 4127.820 kb on - strand at 4127.987 kb on - strand, within HP15_3897 at 4127.989 kb on + strand, within HP15_3897 at 4128.370 kb on + strand, within HP15_3898 at 4128.751 kb on + strand, within HP15_3898 at 4128.755 kb on + strand, within HP15_3898 at 4128.775 kb on - strand, within HP15_3898 at 4128.797 kb on + strand, within HP15_3898 at 4128.842 kb on + strand, within HP15_3898 at 4128.860 kb on - strand, within HP15_3898
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 1 mg/ml remove 4,125,794 - HP15_3895 0.15 -0.6 4,125,807 - HP15_3895 0.16 -1.1 4,125,969 + HP15_3895 0.31 +0.0 4,125,984 + HP15_3895 0.33 -0.1 4,126,023 + HP15_3895 0.36 +0.2 4,126,037 - HP15_3895 0.38 +0.4 4,126,054 + HP15_3895 0.39 -0.2 4,126,179 + HP15_3895 0.51 +0.1 4,126,189 + HP15_3895 0.52 -0.1 4,126,209 - HP15_3895 0.54 -0.2 4,126,306 + HP15_3895 0.63 +1.7 4,126,383 - HP15_3895 0.70 +0.5 4,126,411 - HP15_3895 0.73 -0.4 4,126,438 - HP15_3895 0.75 +0.4 4,126,565 - HP15_3895 0.87 +0.8 4,126,597 + -0.6 4,126,608 - +0.0 4,126,623 + +0.1 4,126,653 - -0.2 4,126,727 - -0.1 4,126,727 - -0.2 4,126,737 - +0.5 4,126,746 + +0.5 4,126,791 + -2.2 4,126,792 + -0.5 4,126,823 + -0.5 4,126,831 - -0.1 4,126,831 - -0.4 4,126,833 - +0.4 4,126,844 + -0.3 4,126,854 - -0.4 4,126,856 + -0.3 4,126,881 + HP15_3896 0.11 +0.1 4,126,889 - HP15_3896 0.11 -0.7 4,126,922 + HP15_3896 0.14 -0.9 4,126,930 - HP15_3896 0.15 -0.5 4,126,931 - HP15_3896 0.15 +0.4 4,127,020 - HP15_3896 0.23 -0.1 4,127,032 - HP15_3896 0.24 -0.4 4,127,056 + HP15_3896 0.26 -0.2 4,127,211 + HP15_3896 0.40 -0.3 4,127,244 + HP15_3896 0.43 -0.2 4,127,249 + HP15_3896 0.44 -0.3 4,127,257 - HP15_3896 0.44 -0.3 4,127,295 - HP15_3896 0.48 -0.1 4,127,380 + HP15_3896 0.55 +1.0 4,127,385 + HP15_3896 0.56 -0.1 4,127,424 + HP15_3896 0.59 -0.3 4,127,502 + HP15_3896 0.66 -0.7 4,127,510 - HP15_3896 0.67 -0.5 4,127,593 + HP15_3896 0.74 +0.2 4,127,603 + HP15_3896 0.75 +0.2 4,127,611 - HP15_3896 0.76 -0.7 4,127,611 - HP15_3896 0.76 -0.2 4,127,617 + HP15_3896 0.76 -0.0 4,127,659 + HP15_3896 0.80 -0.1 4,127,701 + HP15_3896 0.84 -0.6 4,127,701 + HP15_3896 0.84 +0.2 4,127,701 + HP15_3896 0.84 -0.5 4,127,703 - HP15_3896 0.84 -0.5 4,127,709 - HP15_3896 0.85 -0.4 4,127,709 - HP15_3896 0.85 +0.0 4,127,733 + HP15_3896 0.87 -0.7 4,127,733 + HP15_3896 0.87 +0.1 4,127,752 - HP15_3896 0.89 -0.1 4,127,812 + +0.0 4,127,812 + -0.6 4,127,820 - -0.8 4,127,820 - -0.3 4,127,987 - HP15_3897 0.15 +0.3 4,127,989 + HP15_3897 0.16 -0.4 4,128,370 + HP15_3898 0.11 +0.1 4,128,751 + HP15_3898 0.37 -0.1 4,128,755 + HP15_3898 0.37 +1.0 4,128,775 - HP15_3898 0.38 +0.2 4,128,797 + HP15_3898 0.40 -0.2 4,128,842 + HP15_3898 0.43 +0.8 4,128,860 - HP15_3898 0.44 -1.0
Or see this region's nucleotide sequence