Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35790

Experiment: m.b. Gentamicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Gentamicin 0.004 mg/ml
3,750,017	+		PGA1_c35770	0.87	-0.9
3,750,120	-				-0.4
3,750,131	+				-0.3
3,750,156	-		PGA1_c35780	0.11	-0.0
3,750,156	-		PGA1_c35780	0.11	-0.2
3,750,182	+		PGA1_c35780	0.14	+0.4
3,750,182	+		PGA1_c35780	0.14	-0.5
3,750,212	-		PGA1_c35780	0.18	+0.4
3,750,212	-		PGA1_c35780	0.18	-1.0
3,750,299	-		PGA1_c35780	0.29	-1.1
3,750,315	-		PGA1_c35780	0.31	-0.8
3,750,315	-		PGA1_c35780	0.31	-1.3
3,750,330	-		PGA1_c35780	0.33	-1.1
3,750,336	+		PGA1_c35780	0.34	+0.3
3,750,343	+		PGA1_c35780	0.35	-0.6
3,750,348	+		PGA1_c35780	0.35	-0.6
3,750,351	-		PGA1_c35780	0.36	-0.2
3,750,379	+		PGA1_c35780	0.39	-0.5
3,750,379	+		PGA1_c35780	0.39	-1.2
3,750,386	+		PGA1_c35780	0.40	-0.5
3,750,387	-		PGA1_c35780	0.40	-1.7
3,750,421	+		PGA1_c35780	0.45	+1.6
3,750,457	-		PGA1_c35780	0.49	-2.3
3,750,510	+		PGA1_c35780	0.56	-1.4
3,750,510	+		PGA1_c35780	0.56	-0.8
3,750,510	+		PGA1_c35780	0.56	-1.0
3,750,510	+		PGA1_c35780	0.56	-1.2
3,750,510	+		PGA1_c35780	0.56	-1.0
3,750,518	-		PGA1_c35780	0.57	-1.2
3,750,518	-		PGA1_c35780	0.57	-0.4
3,750,519	-		PGA1_c35780	0.57	-0.7
3,750,532	-		PGA1_c35780	0.59	+0.6
3,750,561	-		PGA1_c35780	0.63	-0.2
3,750,581	-		PGA1_c35780	0.65	+0.3
3,750,594	+		PGA1_c35780	0.67	+0.8
3,750,602	-		PGA1_c35780	0.68	+0.9
3,750,604	+		PGA1_c35780	0.68	-0.6
3,750,649	-		PGA1_c35780	0.74	+0.6
3,750,653	+		PGA1_c35780	0.74	-0.8
3,750,656	+		PGA1_c35780	0.75	-0.2
3,750,661	+		PGA1_c35780	0.75	-0.1
3,750,661	+		PGA1_c35780	0.75	+1.4
3,750,661	+		PGA1_c35780	0.75	-1.7
3,750,663	+		PGA1_c35780	0.76	-1.5
3,750,671	+		PGA1_c35780	0.77	-0.4
3,750,674	-		PGA1_c35780	0.77	-0.9
3,750,679	-		PGA1_c35780	0.78	-1.2
3,750,680	+		PGA1_c35780	0.78	-1.4
3,750,689	+		PGA1_c35780	0.79	-1.3
3,750,697	+		PGA1_c35780	0.80	-2.2
3,750,697	+		PGA1_c35780	0.80	-1.7
3,750,697	+		PGA1_c35780	0.80	-1.7
3,750,697	-		PGA1_c35780	0.80	-0.2
3,750,705	-		PGA1_c35780	0.81	-1.0
3,750,705	-		PGA1_c35780	0.81	-1.1
3,750,706	+		PGA1_c35780	0.81	-0.5
3,750,723	+		PGA1_c35780	0.83	+0.3
3,750,759	-		PGA1_c35780	0.88	-0.3
3,750,762	-		PGA1_c35780	0.88	-0.2
3,750,766	+		PGA1_c35780	0.89	-2.5
3,750,766	+		PGA1_c35780	0.89	+0.1
3,750,766	+		PGA1_c35780	0.89	+0.1
3,750,766	+		PGA1_c35780	0.89	+0.4
3,750,768	-		PGA1_c35780	0.89	-0.2
3,750,853	-				-1.0
3,750,856	+				-2.0
3,750,864	-				+0.5
3,750,864	-				-2.8
3,750,864	-				-1.3
3,750,906	+				-2.9
3,750,925	+				-2.2
3,750,933	-				-1.1
3,750,983	+		PGA1_c35790	0.16	+1.5
3,750,990	+		PGA1_c35790	0.17	-0.1
3,750,990	+		PGA1_c35790	0.17	+0.2
3,750,990	+		PGA1_c35790	0.17	-0.7
3,750,991	-		PGA1_c35790	0.18	+0.6
3,751,000	+		PGA1_c35790	0.19	-0.9
3,751,009	+		PGA1_c35790	0.20	+0.8
3,751,009	+		PGA1_c35790	0.20	-0.2
3,751,017	-		PGA1_c35790	0.21	-0.2
3,751,017	-		PGA1_c35790	0.21	-0.1
3,751,017	-		PGA1_c35790	0.21	-0.3
3,751,017	-		PGA1_c35790	0.21	-0.8
3,751,032	-		PGA1_c35790	0.23	-1.4
3,751,060	+		PGA1_c35790	0.27	-0.6
3,751,060	+		PGA1_c35790	0.27	-1.2
3,751,060	+		PGA1_c35790	0.27	-2.7
3,751,060	+		PGA1_c35790	0.27	-0.6
3,751,062	+		PGA1_c35790	0.27	-0.6
3,751,068	-		PGA1_c35790	0.28	+0.1
3,751,068	-		PGA1_c35790	0.28	-0.8
3,751,070	-		PGA1_c35790	0.29	-0.6
3,751,145	-		PGA1_c35790	0.39	-0.1
3,751,195	+		PGA1_c35790	0.46	-1.0
3,751,195	-		PGA1_c35790	0.46	+1.1
3,751,203	-		PGA1_c35790	0.47	+0.3
3,751,253	+		PGA1_c35790	0.54	-0.5
3,751,253	+		PGA1_c35790	0.54	-2.3
3,751,293	-		PGA1_c35790	0.60	-0.1
3,751,307	-		PGA1_c35790	0.62	-1.1
3,751,344	+		PGA1_c35790	0.67	-0.2
3,751,344	+		PGA1_c35790	0.67	-1.4
3,751,345	+		PGA1_c35790	0.67	-1.9
3,751,345	+		PGA1_c35790	0.67	-0.5
3,751,345	+		PGA1_c35790	0.67	-0.6
3,751,353	-		PGA1_c35790	0.68	-1.9
3,751,353	-		PGA1_c35790	0.68	+1.2
3,751,353	-		PGA1_c35790	0.68	-0.3
3,751,353	-		PGA1_c35790	0.68	-0.1
3,751,353	-		PGA1_c35790	0.68	-1.9
3,751,374	-		PGA1_c35790	0.71	-0.6
3,751,374	-		PGA1_c35790	0.71	-0.9
3,751,374	-		PGA1_c35790	0.71	+0.5
3,751,431	-		PGA1_c35790	0.79	-0.6
3,751,446	+		PGA1_c35790	0.81	-1.3
3,751,446	+		PGA1_c35790	0.81	-1.0
3,751,470	-		PGA1_c35790	0.84	-0.7
3,751,479	+		PGA1_c35790	0.86	-1.2
3,751,482	+		PGA1_c35790	0.86	-1.1
3,751,542	-				-2.4
3,751,542	-				-2.8
3,751,542	-				-2.0
3,751,542	-				-1.4
3,751,542	-				-0.5
3,751,542	-				-1.2
3,751,560	-				-1.8
3,751,565	-				-2.3
3,751,569	-				-0.1
3,751,578	+				-1.0
3,751,581	+				-1.2
3,751,591	+				-1.0
3,751,607	+				-0.6
3,751,630	+		PGA1_c35800	0.18	-0.8
3,751,638	-		PGA1_c35800	0.21	-0.5
3,751,651	+		PGA1_c35800	0.26	-1.6
3,751,696	+		PGA1_c35800	0.42	+0.4
3,751,696	-		PGA1_c35800	0.42	-0.3
3,751,709	-		PGA1_c35800	0.47	-0.5
3,751,732	+		PGA1_c35800	0.55	-0.3
3,751,732	+		PGA1_c35800	0.55	+0.4
3,751,732	+		PGA1_c35800	0.55	-1.1
3,751,742	+		PGA1_c35800	0.59	-0.2
3,751,888	+		PGA1_c35810	0.10	-1.8
3,751,897	-		PGA1_c35810	0.13	-1.5
3,751,944	+		PGA1_c35810	0.29	+0.5
3,751,960	-		PGA1_c35810	0.34	+0.1
3,752,005	-		PGA1_c35810	0.49	-1.3
3,752,061	+		PGA1_c35810	0.68	-2.0
3,752,061	+		PGA1_c35810	0.68	-0.8
3,752,061	+		PGA1_c35810	0.68	-0.3
3,752,095	-		PGA1_c35810	0.80	-0.1
3,752,095	-		PGA1_c35810	0.80	-0.6
3,752,121	+		PGA1_c35810	0.89	-1.4
3,752,131	+				-1.6
3,752,134	+				-2.9
3,752,254	+		PGA1_c35820	0.14	-0.8
3,752,254	-		PGA1_c35820	0.14	-1.0
3,752,277	+		PGA1_c35820	0.20	-1.7
3,752,285	-		PGA1_c35820	0.22	-0.1
3,752,360	+		PGA1_c35820	0.41	+0.5
3,752,395	-		PGA1_c35820	0.50	-2.5
3,752,395	-		PGA1_c35820	0.50	-0.3
3,752,395	-		PGA1_c35820	0.50	-0.9
3,752,397	+		PGA1_c35820	0.50	+0.4
3,752,413	-		PGA1_c35820	0.54	+0.8
3,752,416	+		PGA1_c35820	0.55	-1.6
3,752,418	-		PGA1_c35820	0.56	-0.9
3,752,455	+		PGA1_c35820	0.65	-0.1
3,752,456	+		PGA1_c35820	0.65	-0.9
3,752,470	+		PGA1_c35820	0.69	-1.5
3,752,472	-		PGA1_c35820	0.69	-0.5
3,752,483	+		PGA1_c35820	0.72	-0.4
3,752,483	+		PGA1_c35820	0.72	-1.0
3,752,483	+		PGA1_c35820	0.72	-0.9
3,752,483	+		PGA1_c35820	0.72	-1.6
3,752,483	+		PGA1_c35820	0.72	+0.5
3,752,486	-		PGA1_c35820	0.73	-0.6
3,752,491	-		PGA1_c35820	0.74	-3.3
3,752,491	-		PGA1_c35820	0.74	-0.0
3,752,543	-		PGA1_c35820	0.88	-2.2
3,752,543	-		PGA1_c35820	0.88	+0.5