Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02850

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02830 and PGA1_c02840 overlap by 4 nucleotidesPGA1_c02840 and PGA1_c02850 are separated by 236 nucleotidesPGA1_c02850 and PGA1_c02860 are separated by 174 nucleotides PGA1_c02830: PGA1_c02830 - ABC transporter, ATP-binding protein, at 272,771 to 273,700 _c02830 PGA1_c02840: PGA1_c02840 - inner membrane transport permease, at 273,697 to 274,458 _c02840 PGA1_c02850: PGA1_c02850 - peptidase S49-like protein, at 274,695 to 275,492 _c02850 PGA1_c02860: PGA1_c02860 - putative sodium/calcium exchanger protein, at 275,667 to 276,611 _c02860 Position (kb) 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 273.776 kb on + strand, within PGA1_c02840at 273.776 kb on + strand, within PGA1_c02840at 273.776 kb on + strand, within PGA1_c02840at 273.783 kb on + strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.790 kb on + strand, within PGA1_c02840at 273.796 kb on + strand, within PGA1_c02840at 273.800 kb on + strand, within PGA1_c02840at 273.808 kb on - strand, within PGA1_c02840at 273.843 kb on + strand, within PGA1_c02840at 273.843 kb on + strand, within PGA1_c02840at 273.843 kb on + strand, within PGA1_c02840at 273.851 kb on - strand, within PGA1_c02840at 273.851 kb on - strand, within PGA1_c02840at 273.855 kb on + strand, within PGA1_c02840at 273.880 kb on + strand, within PGA1_c02840at 273.884 kb on - strand, within PGA1_c02840at 273.888 kb on - strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.922 kb on - strand, within PGA1_c02840at 273.959 kb on + strand, within PGA1_c02840at 273.969 kb on - strand, within PGA1_c02840at 274.017 kb on - strand, within PGA1_c02840at 274.021 kb on - strand, within PGA1_c02840at 274.021 kb on - strand, within PGA1_c02840at 274.032 kb on - strand, within PGA1_c02840at 274.069 kb on + strand, within PGA1_c02840at 274.084 kb on + strand, within PGA1_c02840at 274.115 kb on - strand, within PGA1_c02840at 274.150 kb on + strand, within PGA1_c02840at 274.150 kb on + strand, within PGA1_c02840at 274.150 kb on - strand, within PGA1_c02840at 274.233 kb on - strand, within PGA1_c02840at 274.296 kb on + strand, within PGA1_c02840at 274.304 kb on - strand, within PGA1_c02840at 274.304 kb on - strand, within PGA1_c02840at 274.309 kb on - strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.357 kb on - strand, within PGA1_c02840at 274.357 kb on - strand, within PGA1_c02840at 274.357 kb on - strand, within PGA1_c02840at 274.370 kb on - strand, within PGA1_c02840at 274.375 kb on - strand, within PGA1_c02840at 274.375 kb on - strand, within PGA1_c02840at 274.391 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.452 kb on + strandat 274.452 kb on + strandat 274.473 kb on + strandat 274.481 kb on - strandat 274.488 kb on + strandat 274.496 kb on - strandat 274.500 kb on + strandat 274.500 kb on + strandat 274.500 kb on + strandat 274.500 kb on + strandat 274.508 kb on - strandat 274.529 kb on - strandat 274.539 kb on - strandat 274.590 kb on - strandat 274.590 kb on - strandat 274.795 kb on - strand, within PGA1_c02850at 275.373 kb on + strand, within PGA1_c02850at 275.534 kb on - strandat 275.534 kb on - strandat 275.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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273,776 + PGA1_c02840 0.10 -0.6
273,776 + PGA1_c02840 0.10 -1.2
273,776 + PGA1_c02840 0.10 +0.4
273,783 + PGA1_c02840 0.11 +0.7
273,784 - PGA1_c02840 0.11 +0.4
273,784 - PGA1_c02840 0.11 -0.2
273,784 - PGA1_c02840 0.11 +0.2
273,784 - PGA1_c02840 0.11 -0.3
273,784 - PGA1_c02840 0.11 +0.2
273,784 - PGA1_c02840 0.11 -0.1
273,784 - PGA1_c02840 0.11 -0.3
273,784 - PGA1_c02840 0.11 -1.5
273,784 - PGA1_c02840 0.11 +0.4
273,790 + PGA1_c02840 0.12 -0.9
273,796 + PGA1_c02840 0.13 -0.6
273,800 + PGA1_c02840 0.14 -0.0
273,808 - PGA1_c02840 0.15 -0.7
273,843 + PGA1_c02840 0.19 +0.0
273,843 + PGA1_c02840 0.19 +0.2
273,843 + PGA1_c02840 0.19 +0.7
273,851 - PGA1_c02840 0.20 -1.8
273,851 - PGA1_c02840 0.20 +0.1
273,855 + PGA1_c02840 0.21 +0.9
273,880 + PGA1_c02840 0.24 +0.4
273,884 - PGA1_c02840 0.25 -0.6
273,888 - PGA1_c02840 0.25 -0.0
273,909 + PGA1_c02840 0.28 +0.2
273,909 + PGA1_c02840 0.28 -1.2
273,909 + PGA1_c02840 0.28 -0.4
273,909 + PGA1_c02840 0.28 -0.2
273,914 + PGA1_c02840 0.28 +0.2
273,914 + PGA1_c02840 0.28 -0.0
273,914 + PGA1_c02840 0.28 +0.9
273,914 + PGA1_c02840 0.28 -0.9
273,917 - PGA1_c02840 0.29 +0.3
273,917 - PGA1_c02840 0.29 -0.3
273,917 - PGA1_c02840 0.29 -0.2
273,917 - PGA1_c02840 0.29 -0.3
273,917 - PGA1_c02840 0.29 +0.2
273,917 - PGA1_c02840 0.29 +0.3
273,922 - PGA1_c02840 0.30 +0.2
273,959 + PGA1_c02840 0.34 +0.1
273,969 - PGA1_c02840 0.36 -0.8
274,017 - PGA1_c02840 0.42 +0.3
274,021 - PGA1_c02840 0.43 -1.0
274,021 - PGA1_c02840 0.43 +0.1
274,032 - PGA1_c02840 0.44 +0.1
274,069 + PGA1_c02840 0.49 +0.8
274,084 + PGA1_c02840 0.51 +2.5
274,115 - PGA1_c02840 0.55 -1.0
274,150 + PGA1_c02840 0.59 -0.6
274,150 + PGA1_c02840 0.59 -1.2
274,150 - PGA1_c02840 0.59 -0.2
274,233 - PGA1_c02840 0.70 +1.7
274,296 + PGA1_c02840 0.79 +0.4
274,304 - PGA1_c02840 0.80 +0.4
274,304 - PGA1_c02840 0.80 +0.4
274,309 - PGA1_c02840 0.80 +0.6
274,349 + PGA1_c02840 0.86 +0.1
274,349 + PGA1_c02840 0.86 +0.2
274,349 + PGA1_c02840 0.86 +1.3
274,349 + PGA1_c02840 0.86 -1.0
274,349 + PGA1_c02840 0.86 -0.4
274,357 - PGA1_c02840 0.87 +0.4
274,357 - PGA1_c02840 0.87 -0.1
274,357 - PGA1_c02840 0.87 -0.3
274,370 - PGA1_c02840 0.88 -1.9
274,375 - PGA1_c02840 0.89 -0.3
274,375 - PGA1_c02840 0.89 -0.2
274,391 + -0.3
274,406 + +0.4
274,406 + +0.4
274,406 + +1.5
274,406 + -3.3
274,406 + -1.1
274,406 + +0.4
274,406 + -0.0
274,406 + +0.0
274,414 - -0.7
274,414 - +1.0
274,414 - +1.1
274,414 - +0.2
274,414 - -0.1
274,414 - +0.0
274,414 - +1.7
274,452 + +0.8
274,452 + +0.6
274,473 + +0.9
274,481 - +0.5
274,488 + +0.2
274,496 - -0.2
274,500 + -0.4
274,500 + -0.3
274,500 + +0.1
274,500 + +0.5
274,508 - +0.5
274,529 - +0.5
274,539 - +0.9
274,590 - +1.4
274,590 - +0.1
274,795 - PGA1_c02850 0.13 +2.0
275,373 + PGA1_c02850 0.85 +1.8
275,534 - +2.0
275,534 - +3.2
275,534 - +1.3

Or see this region's nucleotide sequence