Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02820

Experiment: m.b. Gentamicin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c02810 and PGA1_c02820 are separated by 9 nucleotidesPGA1_c02820 and PGA1_c02830 are separated by 195 nucleotides PGA1_c02810: PGA1_c02810 - P-hydroxybenzoate hydroxylase PobA, at 270,683 to 271,909 _c02810 PGA1_c02820: PGA1_c02820 - putative transcriptional regulator, AraC family, at 271,919 to 272,575 _c02820 PGA1_c02830: PGA1_c02830 - ABC transporter, ATP-binding protein, at 272,771 to 273,700 _c02830 Position (kb) 271 272 273Strain fitness (log2 ratio) -2 -1 0 1 2at 270.989 kb on - strand, within PGA1_c02810at 270.993 kb on - strand, within PGA1_c02810at 271.016 kb on - strand, within PGA1_c02810at 271.016 kb on - strand, within PGA1_c02810at 271.023 kb on + strand, within PGA1_c02810at 271.122 kb on + strand, within PGA1_c02810at 271.144 kb on + strand, within PGA1_c02810at 271.144 kb on + strand, within PGA1_c02810at 271.151 kb on - strand, within PGA1_c02810at 271.152 kb on - strand, within PGA1_c02810at 271.168 kb on + strand, within PGA1_c02810at 271.223 kb on - strand, within PGA1_c02810at 271.273 kb on + strand, within PGA1_c02810at 271.281 kb on - strand, within PGA1_c02810at 271.282 kb on - strand, within PGA1_c02810at 271.290 kb on + strand, within PGA1_c02810at 271.303 kb on + strand, within PGA1_c02810at 271.309 kb on + strand, within PGA1_c02810at 271.385 kb on + strand, within PGA1_c02810at 271.390 kb on - strand, within PGA1_c02810at 271.452 kb on + strand, within PGA1_c02810at 271.489 kb on + strand, within PGA1_c02810at 271.496 kb on + strand, within PGA1_c02810at 271.504 kb on - strand, within PGA1_c02810at 271.504 kb on - strand, within PGA1_c02810at 271.618 kb on - strand, within PGA1_c02810at 271.670 kb on + strand, within PGA1_c02810at 271.690 kb on + strand, within PGA1_c02810at 271.692 kb on - strand, within PGA1_c02810at 271.700 kb on - strand, within PGA1_c02810at 271.706 kb on + strand, within PGA1_c02810at 271.794 kb on + strandat 271.835 kb on + strandat 271.835 kb on + strandat 271.835 kb on + strandat 271.843 kb on - strandat 271.843 kb on - strandat 271.870 kb on + strandat 271.873 kb on - strandat 271.895 kb on + strandat 271.903 kb on + strandat 271.918 kb on - strandat 272.044 kb on + strand, within PGA1_c02820at 272.052 kb on - strand, within PGA1_c02820at 272.052 kb on - strand, within PGA1_c02820at 272.133 kb on - strand, within PGA1_c02820at 272.133 kb on - strand, within PGA1_c02820at 272.150 kb on + strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.158 kb on - strand, within PGA1_c02820at 272.160 kb on + strand, within PGA1_c02820at 272.160 kb on + strand, within PGA1_c02820at 272.168 kb on - strand, within PGA1_c02820at 272.168 kb on - strand, within PGA1_c02820at 272.168 kb on - strand, within PGA1_c02820at 272.195 kb on - strand, within PGA1_c02820at 272.254 kb on - strand, within PGA1_c02820at 272.290 kb on + strand, within PGA1_c02820at 272.300 kb on + strand, within PGA1_c02820at 272.310 kb on - strand, within PGA1_c02820at 272.339 kb on - strand, within PGA1_c02820at 272.404 kb on + strand, within PGA1_c02820at 272.404 kb on + strand, within PGA1_c02820at 272.412 kb on - strand, within PGA1_c02820at 272.412 kb on - strand, within PGA1_c02820at 272.412 kb on - strand, within PGA1_c02820at 272.414 kb on + strand, within PGA1_c02820at 272.414 kb on + strand, within PGA1_c02820at 272.414 kb on + strand, within PGA1_c02820at 272.422 kb on - strand, within PGA1_c02820at 272.428 kb on + strand, within PGA1_c02820at 272.443 kb on - strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.470 kb on + strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.478 kb on - strand, within PGA1_c02820at 272.493 kb on + strand, within PGA1_c02820at 272.537 kb on + strandat 272.664 kb on - strandat 272.674 kb on + strandat 272.674 kb on + strandat 272.674 kb on + strandat 272.682 kb on - strandat 272.682 kb on - strandat 272.716 kb on + strandat 272.716 kb on + strandat 272.716 kb on + strandat 272.722 kb on + strandat 272.724 kb on - strandat 272.724 kb on - strandat 272.727 kb on + strandat 272.727 kb on + strandat 272.732 kb on + strandat 272.735 kb on - strandat 272.742 kb on + strandat 272.745 kb on - strandat 272.788 kb on - strandat 272.820 kb on + strandat 272.820 kb on + strandat 272.828 kb on - strandat 272.830 kb on + strandat 272.830 kb on + strandat 272.838 kb on - strandat 272.838 kb on - strandat 272.850 kb on + strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.919 kb on - strand, within PGA1_c02830at 272.986 kb on + strand, within PGA1_c02830at 272.986 kb on + strand, within PGA1_c02830at 272.986 kb on + strand, within PGA1_c02830at 272.994 kb on - strand, within PGA1_c02830at 272.994 kb on - strand, within PGA1_c02830at 272.997 kb on + strand, within PGA1_c02830at 272.997 kb on + strand, within PGA1_c02830at 273.007 kb on + strand, within PGA1_c02830at 273.053 kb on + strand, within PGA1_c02830at 273.053 kb on + strand, within PGA1_c02830at 273.053 kb on + strand, within PGA1_c02830at 273.061 kb on - strand, within PGA1_c02830at 273.061 kb on - strand, within PGA1_c02830at 273.085 kb on + strand, within PGA1_c02830at 273.110 kb on - strand, within PGA1_c02830at 273.127 kb on + strand, within PGA1_c02830at 273.134 kb on + strand, within PGA1_c02830at 273.284 kb on + strand, within PGA1_c02830at 273.307 kb on + strand, within PGA1_c02830at 273.315 kb on - strand, within PGA1_c02830at 273.315 kb on - strand, within PGA1_c02830at 273.328 kb on - strand, within PGA1_c02830at 273.359 kb on + strand, within PGA1_c02830at 273.379 kb on + strand, within PGA1_c02830at 273.425 kb on + strand, within PGA1_c02830at 273.491 kb on + strand, within PGA1_c02830at 273.501 kb on + strand, within PGA1_c02830at 273.502 kb on + strand, within PGA1_c02830at 273.516 kb on + strand, within PGA1_c02830at 273.516 kb on + strand, within PGA1_c02830at 273.516 kb on + strand, within PGA1_c02830at 273.524 kb on - strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
remove
270,989 - PGA1_c02810 0.25 -0.3
270,993 - PGA1_c02810 0.25 +0.5
271,016 - PGA1_c02810 0.27 -0.1
271,016 - PGA1_c02810 0.27 +0.4
271,023 + PGA1_c02810 0.28 -0.5
271,122 + PGA1_c02810 0.36 +0.7
271,144 + PGA1_c02810 0.38 +0.9
271,144 + PGA1_c02810 0.38 -0.2
271,151 - PGA1_c02810 0.38 +0.4
271,152 - PGA1_c02810 0.38 +0.1
271,168 + PGA1_c02810 0.40 +1.0
271,223 - PGA1_c02810 0.44 -0.1
271,273 + PGA1_c02810 0.48 +1.0
271,281 - PGA1_c02810 0.49 -1.1
271,282 - PGA1_c02810 0.49 +0.4
271,290 + PGA1_c02810 0.49 +0.7
271,303 + PGA1_c02810 0.51 -0.3
271,309 + PGA1_c02810 0.51 +0.1
271,385 + PGA1_c02810 0.57 -0.2
271,390 - PGA1_c02810 0.58 -0.1
271,452 + PGA1_c02810 0.63 -0.7
271,489 + PGA1_c02810 0.66 -0.4
271,496 + PGA1_c02810 0.66 -1.3
271,504 - PGA1_c02810 0.67 +2.4
271,504 - PGA1_c02810 0.67 -0.9
271,618 - PGA1_c02810 0.76 +0.3
271,670 + PGA1_c02810 0.80 -1.5
271,690 + PGA1_c02810 0.82 -0.0
271,692 - PGA1_c02810 0.82 +0.8
271,700 - PGA1_c02810 0.83 -0.4
271,706 + PGA1_c02810 0.83 -0.2
271,794 + -2.3
271,835 + +1.1
271,835 + +0.4
271,835 + -0.2
271,843 - -0.6
271,843 - +0.2
271,870 + -2.1
271,873 - -0.3
271,895 + -0.5
271,903 + +0.6
271,918 - -0.5
272,044 + PGA1_c02820 0.19 -0.0
272,052 - PGA1_c02820 0.20 +1.1
272,052 - PGA1_c02820 0.20 -0.9
272,133 - PGA1_c02820 0.33 -0.3
272,133 - PGA1_c02820 0.33 -0.8
272,150 + PGA1_c02820 0.35 -0.7
272,158 - PGA1_c02820 0.36 +0.4
272,158 - PGA1_c02820 0.36 +0.0
272,158 - PGA1_c02820 0.36 +0.3
272,158 - PGA1_c02820 0.36 -0.2
272,160 + PGA1_c02820 0.37 -0.4
272,160 + PGA1_c02820 0.37 +1.0
272,168 - PGA1_c02820 0.38 +0.1
272,168 - PGA1_c02820 0.38 -0.2
272,168 - PGA1_c02820 0.38 +0.9
272,195 - PGA1_c02820 0.42 -0.3
272,254 - PGA1_c02820 0.51 -0.2
272,290 + PGA1_c02820 0.56 -0.1
272,300 + PGA1_c02820 0.58 +0.0
272,310 - PGA1_c02820 0.60 -0.7
272,339 - PGA1_c02820 0.64 +1.0
272,404 + PGA1_c02820 0.74 -1.9
272,404 + PGA1_c02820 0.74 -0.3
272,412 - PGA1_c02820 0.75 -0.8
272,412 - PGA1_c02820 0.75 -1.0
272,412 - PGA1_c02820 0.75 +0.2
272,414 + PGA1_c02820 0.75 -0.5
272,414 + PGA1_c02820 0.75 -0.6
272,414 + PGA1_c02820 0.75 -0.5
272,422 - PGA1_c02820 0.77 -1.4
272,428 + PGA1_c02820 0.77 -0.1
272,443 - PGA1_c02820 0.80 +0.7
272,470 + PGA1_c02820 0.84 +0.1
272,470 + PGA1_c02820 0.84 -0.1
272,470 + PGA1_c02820 0.84 +0.2
272,470 + PGA1_c02820 0.84 -0.3
272,470 + PGA1_c02820 0.84 +0.0
272,470 + PGA1_c02820 0.84 -1.1
272,470 + PGA1_c02820 0.84 -0.3
272,470 + PGA1_c02820 0.84 -0.5
272,470 + PGA1_c02820 0.84 +1.1
272,470 + PGA1_c02820 0.84 -0.0
272,478 - PGA1_c02820 0.85 -0.2
272,478 - PGA1_c02820 0.85 -0.2
272,478 - PGA1_c02820 0.85 -0.2
272,478 - PGA1_c02820 0.85 -0.8
272,478 - PGA1_c02820 0.85 +0.8
272,478 - PGA1_c02820 0.85 -0.3
272,478 - PGA1_c02820 0.85 -1.0
272,478 - PGA1_c02820 0.85 -0.3
272,478 - PGA1_c02820 0.85 -0.1
272,478 - PGA1_c02820 0.85 -1.2
272,478 - PGA1_c02820 0.85 +0.0
272,478 - PGA1_c02820 0.85 -0.7
272,478 - PGA1_c02820 0.85 +0.8
272,478 - PGA1_c02820 0.85 -0.0
272,493 + PGA1_c02820 0.87 +0.1
272,537 + -1.0
272,664 - -0.3
272,674 + +1.0
272,674 + +0.2
272,674 + +0.2
272,682 - +0.3
272,682 - -0.8
272,716 + +0.1
272,716 + -0.3
272,716 + -0.2
272,722 + +0.8
272,724 - -1.0
272,724 - -0.3
272,727 + -0.0
272,727 + -0.1
272,732 + +0.4
272,735 - -1.5
272,742 + -0.5
272,745 - +0.5
272,788 - -0.3
272,820 + -0.8
272,820 + -0.3
272,828 - +0.7
272,830 + +0.3
272,830 + -0.5
272,838 - -0.2
272,838 - +0.5
272,850 + +0.1
272,858 - -0.0
272,858 - +0.1
272,858 - +2.4
272,858 - -0.2
272,858 - -0.1
272,858 - -0.9
272,919 - PGA1_c02830 0.16 +0.4
272,986 + PGA1_c02830 0.23 +0.3
272,986 + PGA1_c02830 0.23 +0.3
272,986 + PGA1_c02830 0.23 +0.2
272,994 - PGA1_c02830 0.24 +0.2
272,994 - PGA1_c02830 0.24 +0.4
272,997 + PGA1_c02830 0.24 -1.3
272,997 + PGA1_c02830 0.24 +0.4
273,007 + PGA1_c02830 0.25 -0.6
273,053 + PGA1_c02830 0.30 +1.5
273,053 + PGA1_c02830 0.30 -0.4
273,053 + PGA1_c02830 0.30 -0.2
273,061 - PGA1_c02830 0.31 -0.5
273,061 - PGA1_c02830 0.31 -0.1
273,085 + PGA1_c02830 0.34 +0.2
273,110 - PGA1_c02830 0.36 +2.3
273,127 + PGA1_c02830 0.38 -0.5
273,134 + PGA1_c02830 0.39 -2.3
273,284 + PGA1_c02830 0.55 -0.8
273,307 + PGA1_c02830 0.58 +0.9
273,315 - PGA1_c02830 0.58 +0.6
273,315 - PGA1_c02830 0.58 +0.2
273,328 - PGA1_c02830 0.60 -0.3
273,359 + PGA1_c02830 0.63 +0.7
273,379 + PGA1_c02830 0.65 -1.2
273,425 + PGA1_c02830 0.70 -0.5
273,491 + PGA1_c02830 0.77 +0.8
273,501 + PGA1_c02830 0.78 +0.5
273,502 + PGA1_c02830 0.79 +0.3
273,516 + PGA1_c02830 0.80 -0.2
273,516 + PGA1_c02830 0.80 +0.3
273,516 + PGA1_c02830 0.80 +0.6
273,524 - PGA1_c02830 0.81 +0.7
273,562 + PGA1_c02830 0.85 -0.2
273,562 + PGA1_c02830 0.85 -0.4
273,562 + PGA1_c02830 0.85 +0.3
273,562 + PGA1_c02830 0.85 -0.5
273,562 + PGA1_c02830 0.85 +1.1
273,562 + PGA1_c02830 0.85 -0.7
273,562 + PGA1_c02830 0.85 +0.1
273,570 - PGA1_c02830 0.86 +0.1
273,570 - PGA1_c02830 0.86 -0.0
273,570 - PGA1_c02830 0.86 -0.9
273,570 - PGA1_c02830 0.86 -0.4
273,570 - PGA1_c02830 0.86 +0.9
273,570 - PGA1_c02830 0.86 -1.0
273,570 - PGA1_c02830 0.86 +0.5
273,570 - PGA1_c02830 0.86 +0.7
273,570 - PGA1_c02830 0.86 +0.4
273,570 - PGA1_c02830 0.86 -2.0
273,570 - PGA1_c02830 0.86 -0.5
273,570 - PGA1_c02830 0.86 +0.2
273,570 - PGA1_c02830 0.86 +0.2
273,570 - PGA1_c02830 0.86 -0.0
273,570 - PGA1_c02830 0.86 +1.9
273,570 - PGA1_c02830 0.86 -0.5
273,570 - PGA1_c02830 0.86 -1.0
273,570 - PGA1_c02830 0.86 +0.2
273,570 - PGA1_c02830 0.86 +0.5
273,570 - PGA1_c02830 0.86 +0.9
273,570 - PGA1_c02830 0.86 +0.5
273,570 - PGA1_c02830 0.86 -0.0
273,570 - PGA1_c02830 0.86 -0.5
273,570 - PGA1_c02830 0.86 +0.3
273,570 - PGA1_c02830 0.86 -0.8
273,570 - PGA1_c02830 0.86 +1.1
273,570 - PGA1_c02830 0.86 +0.1
273,570 - PGA1_c02830 0.86 +0.3

Or see this region's nucleotide sequence