Experiment: m.b. Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2551 and HP15_2552 are separated by 3 nucleotides HP15_2552 and HP15_2553 overlap by 1 nucleotides HP15_2553 and HP15_2554 are separated by 154 nucleotides
HP15_2551: HP15_2551 - ABC-1 domain protein, at 2,697,061 to 2,698,416
_2551
HP15_2552: HP15_2552 - silent information regulator protein Sir2, at 2,698,420 to 2,699,097
_2552
HP15_2553: HP15_2553 - oxidoreductase, FAD-binding protein, at 2,699,097 to 2,700,536
_2553
HP15_2554: HP15_2554 - D-3-phosphoglycerate dehydrogenase-like protein, at 2,700,691 to 2,701,920
_2554
Position (kb)
2699
2700
2701 Strain fitness (log2 ratio)
-1
0
1 at 2698.126 kb on - strand, within HP15_2551 at 2698.216 kb on + strand, within HP15_2551 at 2698.216 kb on + strand, within HP15_2551 at 2698.224 kb on - strand, within HP15_2551 at 2698.305 kb on + strand at 2698.362 kb on + strand at 2698.483 kb on - strand at 2698.509 kb on + strand, within HP15_2552 at 2698.517 kb on - strand, within HP15_2552 at 2698.532 kb on + strand, within HP15_2552 at 2698.628 kb on + strand, within HP15_2552 at 2698.636 kb on - strand, within HP15_2552 at 2698.934 kb on + strand, within HP15_2552 at 2698.942 kb on - strand, within HP15_2552 at 2699.010 kb on - strand, within HP15_2552 at 2699.010 kb on - strand, within HP15_2552 at 2699.035 kb on + strand at 2700.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 1 mg/ml remove 2,698,126 - HP15_2551 0.79 -0.4 2,698,216 + HP15_2551 0.85 -0.1 2,698,216 + HP15_2551 0.85 +0.3 2,698,224 - HP15_2551 0.86 -0.5 2,698,305 + +0.1 2,698,362 + +0.6 2,698,483 - -0.4 2,698,509 + HP15_2552 0.13 +0.5 2,698,517 - HP15_2552 0.14 -0.5 2,698,532 + HP15_2552 0.17 -0.2 2,698,628 + HP15_2552 0.31 +0.1 2,698,636 - HP15_2552 0.32 -0.3 2,698,934 + HP15_2552 0.76 +0.3 2,698,942 - HP15_2552 0.77 +0.4 2,699,010 - HP15_2552 0.87 +0.4 2,699,010 - HP15_2552 0.87 -0.8 2,699,035 + -0.0 2,700,523 - -0.2
Or see this region's nucleotide sequence