Experiment: m.b. Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2436 and HP15_2437 are separated by 188 nucleotides HP15_2437 and HP15_2438 overlap by 1 nucleotides HP15_2438 and HP15_2439 overlap by 4 nucleotides
HP15_2435: HP15_2435 - ABC-type transport system involved in resistance to organic solvents, permease component, at 2,574,588 to 2,575,370
_2435
HP15_2436: HP15_2436 - toluene tolerance ABC efflux transporter, ATP-binding protein, at 2,575,367 to 2,576,179
_2436
HP15_2437: HP15_2437 - KpsF/GutQ family protein, at 2,576,368 to 2,577,347
_2437
HP15_2438: HP15_2438 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 2,577,347 to 2,577,919
_2438
HP15_2439: HP15_2439 - protein containing DUF1239, at 2,577,916 to 2,578,500
_2439
Position (kb)
2576
2577
2578 Strain fitness (log2 ratio)
-2
-1
0
1 at 2575.377 kb on + strand at 2575.495 kb on + strand, within HP15_2436 at 2575.500 kb on + strand, within HP15_2436 at 2575.503 kb on - strand, within HP15_2436 at 2575.603 kb on - strand, within HP15_2436 at 2575.613 kb on + strand, within HP15_2436 at 2575.629 kb on + strand, within HP15_2436 at 2575.718 kb on + strand, within HP15_2436 at 2575.721 kb on - strand, within HP15_2436 at 2575.786 kb on + strand, within HP15_2436 at 2575.910 kb on + strand, within HP15_2436 at 2575.943 kb on + strand, within HP15_2436 at 2575.951 kb on - strand, within HP15_2436 at 2575.987 kb on + strand, within HP15_2436 at 2576.007 kb on + strand, within HP15_2436 at 2576.073 kb on - strand, within HP15_2436 at 2576.073 kb on - strand, within HP15_2436 at 2576.210 kb on + strand at 2576.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 1 mg/ml remove 2,575,377 + -0.4 2,575,495 + HP15_2436 0.16 -0.3 2,575,500 + HP15_2436 0.16 -0.5 2,575,503 - HP15_2436 0.17 -0.6 2,575,603 - HP15_2436 0.29 -0.9 2,575,613 + HP15_2436 0.30 -0.5 2,575,629 + HP15_2436 0.32 -0.7 2,575,718 + HP15_2436 0.43 -0.4 2,575,721 - HP15_2436 0.44 -2.1 2,575,786 + HP15_2436 0.52 +0.3 2,575,910 + HP15_2436 0.67 -0.6 2,575,943 + HP15_2436 0.71 -1.5 2,575,951 - HP15_2436 0.72 -0.5 2,575,987 + HP15_2436 0.76 -1.6 2,576,007 + HP15_2436 0.79 -0.9 2,576,073 - HP15_2436 0.87 -0.3 2,576,073 - HP15_2436 0.87 -0.6 2,576,210 + +0.1 2,576,260 + +0.1
Or see this region's nucleotide sequence