Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02510

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02490 and PGA1_c02500 are separated by 7 nucleotidesPGA1_c02500 and PGA1_c02510 are separated by 163 nucleotidesPGA1_c02510 and PGA1_c02520 are separated by 330 nucleotides PGA1_c02490: PGA1_c02490 - sporulation protein R-like protein, at 232,303 to 233,781 _c02490 PGA1_c02500: PGA1_c02500 - transcriptional regulator, GntR family, at 233,789 to 234,454 _c02500 PGA1_c02510: PGA1_c02510 - S-(hydroxymethyl)glutathione dehydrogenase FrmA, at 234,618 to 235,733 _c02510 PGA1_c02520: PGA1_c02520 - copper-transporting P-type ATPase ActP, at 236,064 to 238,580 _c02520 Position (kb) 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1at 233.634 kb on + strandat 233.634 kb on + strandat 233.634 kb on + strandat 233.634 kb on + strandat 233.642 kb on - strandat 233.642 kb on - strandat 233.669 kb on - strandat 233.681 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.732 kb on + strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.740 kb on - strandat 233.761 kb on - strandat 233.795 kb on + strandat 233.812 kb on - strandat 233.911 kb on + strand, within PGA1_c02500at 234.014 kb on - strand, within PGA1_c02500at 234.019 kb on + strand, within PGA1_c02500at 234.034 kb on - strand, within PGA1_c02500at 234.133 kb on + strand, within PGA1_c02500at 234.146 kb on - strand, within PGA1_c02500at 234.237 kb on + strand, within PGA1_c02500at 234.245 kb on - strand, within PGA1_c02500at 234.245 kb on - strand, within PGA1_c02500at 234.255 kb on - strand, within PGA1_c02500at 234.266 kb on + strand, within PGA1_c02500at 234.271 kb on + strand, within PGA1_c02500at 234.304 kb on + strand, within PGA1_c02500at 234.423 kb on + strandat 234.484 kb on - strandat 234.590 kb on + strandat 234.600 kb on - strandat 234.662 kb on + strandat 234.695 kb on + strandat 234.695 kb on + strandat 234.703 kb on - strandat 234.703 kb on - strandat 234.703 kb on - strandat 234.734 kb on + strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.742 kb on - strand, within PGA1_c02510at 234.759 kb on - strand, within PGA1_c02510at 234.764 kb on - strand, within PGA1_c02510at 234.819 kb on - strand, within PGA1_c02510at 234.865 kb on - strand, within PGA1_c02510at 234.883 kb on + strand, within PGA1_c02510at 234.891 kb on + strand, within PGA1_c02510at 234.949 kb on - strand, within PGA1_c02510at 234.956 kb on - strand, within PGA1_c02510at 234.972 kb on - strand, within PGA1_c02510at 234.972 kb on - strand, within PGA1_c02510at 234.972 kb on - strand, within PGA1_c02510at 235.008 kb on - strand, within PGA1_c02510at 235.008 kb on - strand, within PGA1_c02510at 235.066 kb on + strand, within PGA1_c02510at 235.074 kb on - strand, within PGA1_c02510at 235.091 kb on + strand, within PGA1_c02510at 235.091 kb on + strand, within PGA1_c02510at 235.110 kb on - strand, within PGA1_c02510at 235.186 kb on + strand, within PGA1_c02510at 235.188 kb on + strand, within PGA1_c02510at 235.188 kb on + strand, within PGA1_c02510at 235.231 kb on + strand, within PGA1_c02510at 235.242 kb on + strand, within PGA1_c02510at 235.351 kb on + strand, within PGA1_c02510at 235.353 kb on + strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.382 kb on + strand, within PGA1_c02510at 235.390 kb on - strand, within PGA1_c02510at 235.493 kb on + strand, within PGA1_c02510at 235.493 kb on + strand, within PGA1_c02510at 235.493 kb on + strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.511 kb on - strand, within PGA1_c02510at 235.661 kb on + strandat 235.668 kb on - strandat 235.698 kb on - strandat 235.707 kb on + strandat 235.707 kb on + strandat 235.811 kb on + strandat 235.818 kb on + strandat 235.932 kb on + strandat 235.994 kb on - strandat 236.026 kb on + strandat 236.034 kb on - strandat 236.159 kb on + strandat 236.300 kb on + strandat 236.308 kb on - strandat 236.315 kb on - strandat 236.315 kb on - strandat 236.315 kb on - strandat 236.355 kb on - strand, within PGA1_c02520at 236.379 kb on + strand, within PGA1_c02520at 236.379 kb on + strand, within PGA1_c02520at 236.424 kb on + strand, within PGA1_c02520at 236.444 kb on - strand, within PGA1_c02520at 236.447 kb on + strand, within PGA1_c02520at 236.577 kb on + strand, within PGA1_c02520at 236.585 kb on - strand, within PGA1_c02520at 236.600 kb on + strand, within PGA1_c02520at 236.664 kb on + strand, within PGA1_c02520at 236.706 kb on - strand, within PGA1_c02520at 236.716 kb on - strand, within PGA1_c02520at 236.716 kb on - strand, within PGA1_c02520at 236.718 kb on + strand, within PGA1_c02520at 236.721 kb on - strand, within PGA1_c02520

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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233,634 + +0.5
233,634 + -0.2
233,634 + +0.5
233,634 + +0.8
233,642 - -1.1
233,642 - +0.2
233,669 - +0.5
233,681 + -0.3
233,732 + +0.9
233,732 + +0.1
233,732 + -0.7
233,732 + +0.2
233,732 + -0.2
233,732 + +1.0
233,732 + +0.1
233,740 - +0.2
233,740 - +0.8
233,740 - +0.2
233,740 - +0.3
233,761 - +0.7
233,795 + +0.1
233,812 - +0.9
233,911 + PGA1_c02500 0.18 -0.0
234,014 - PGA1_c02500 0.34 -1.5
234,019 + PGA1_c02500 0.35 -3.1
234,034 - PGA1_c02500 0.37 -0.0
234,133 + PGA1_c02500 0.52 +0.5
234,146 - PGA1_c02500 0.54 +0.4
234,237 + PGA1_c02500 0.67 +1.4
234,245 - PGA1_c02500 0.68 +0.7
234,245 - PGA1_c02500 0.68 +1.2
234,255 - PGA1_c02500 0.70 -0.7
234,266 + PGA1_c02500 0.72 +1.1
234,271 + PGA1_c02500 0.72 +1.0
234,304 + PGA1_c02500 0.77 +0.9
234,423 + -0.1
234,484 - -1.9
234,590 + +1.3
234,600 - +1.1
234,662 + +0.3
234,695 + +0.3
234,695 + -0.7
234,703 - +0.7
234,703 - +0.4
234,703 - -0.3
234,734 + PGA1_c02510 0.10 -0.1
234,742 - PGA1_c02510 0.11 +0.6
234,742 - PGA1_c02510 0.11 +1.0
234,742 - PGA1_c02510 0.11 -1.5
234,759 - PGA1_c02510 0.13 +0.6
234,764 - PGA1_c02510 0.13 +0.2
234,819 - PGA1_c02510 0.18 -0.8
234,865 - PGA1_c02510 0.22 -0.3
234,883 + PGA1_c02510 0.24 -0.6
234,891 + PGA1_c02510 0.24 +1.0
234,949 - PGA1_c02510 0.30 +0.3
234,956 - PGA1_c02510 0.30 +0.9
234,972 - PGA1_c02510 0.32 -0.3
234,972 - PGA1_c02510 0.32 -0.2
234,972 - PGA1_c02510 0.32 -0.2
235,008 - PGA1_c02510 0.35 -0.9
235,008 - PGA1_c02510 0.35 +0.1
235,066 + PGA1_c02510 0.40 -1.1
235,074 - PGA1_c02510 0.41 +0.2
235,091 + PGA1_c02510 0.42 -0.3
235,091 + PGA1_c02510 0.42 +0.2
235,110 - PGA1_c02510 0.44 -0.1
235,186 + PGA1_c02510 0.51 +0.4
235,188 + PGA1_c02510 0.51 -1.0
235,188 + PGA1_c02510 0.51 -1.6
235,231 + PGA1_c02510 0.55 +1.2
235,242 + PGA1_c02510 0.56 +0.0
235,351 + PGA1_c02510 0.66 -0.4
235,353 + PGA1_c02510 0.66 +0.9
235,369 - PGA1_c02510 0.67 -0.0
235,369 - PGA1_c02510 0.67 -0.1
235,369 - PGA1_c02510 0.67 -0.3
235,369 - PGA1_c02510 0.67 -0.7
235,382 + PGA1_c02510 0.68 -2.1
235,390 - PGA1_c02510 0.69 -0.3
235,493 + PGA1_c02510 0.78 +0.5
235,493 + PGA1_c02510 0.78 +1.4
235,493 + PGA1_c02510 0.78 +0.7
235,501 - PGA1_c02510 0.79 +0.8
235,501 - PGA1_c02510 0.79 +0.2
235,501 - PGA1_c02510 0.79 -0.3
235,501 - PGA1_c02510 0.79 +0.6
235,501 - PGA1_c02510 0.79 -1.2
235,501 - PGA1_c02510 0.79 +0.5
235,501 - PGA1_c02510 0.79 +0.0
235,501 - PGA1_c02510 0.79 -0.5
235,501 - PGA1_c02510 0.79 +0.1
235,501 - PGA1_c02510 0.79 -0.7
235,511 - PGA1_c02510 0.80 -1.8
235,661 + -0.9
235,668 - -0.8
235,698 - -0.9
235,707 + -0.9
235,707 + +0.4
235,811 + -1.7
235,818 + -0.5
235,932 + -0.6
235,994 - +0.9
236,026 + -0.3
236,034 - +0.0
236,159 + -1.5
236,300 + +0.2
236,308 - +0.4
236,315 - +0.4
236,315 - -1.0
236,315 - -0.2
236,355 - PGA1_c02520 0.12 +0.7
236,379 + PGA1_c02520 0.13 +0.7
236,379 + PGA1_c02520 0.13 +1.5
236,424 + PGA1_c02520 0.14 +1.1
236,444 - PGA1_c02520 0.15 +0.1
236,447 + PGA1_c02520 0.15 +0.4
236,577 + PGA1_c02520 0.20 -0.7
236,585 - PGA1_c02520 0.21 +0.1
236,600 + PGA1_c02520 0.21 +0.6
236,664 + PGA1_c02520 0.24 +0.2
236,706 - PGA1_c02520 0.26 +1.0
236,716 - PGA1_c02520 0.26 -1.3
236,716 - PGA1_c02520 0.26 +0.4
236,718 + PGA1_c02520 0.26 +0.7
236,721 - PGA1_c02520 0.26 +0.6

Or see this region's nucleotide sequence